HEADER OXIDOREDUCTASE 11-FEB-20 6VSP TITLE STRUCTURE OF SERRATIA MARCESCENS 2,3-BUTANEDIOL DEHYDROGENASE MUTANT TITLE 2 Q247A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-BUTANEDIOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-OXOACYL-ACP REDUCTASE,SDR FAMILY OXIDOREDUCTASE; COMPND 5 EC: 1.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 GENE: BUDC, A8A12_06140, FG174_10665; SOURCE 5 EXPRESSION_SYSTEM: ZYMOMONAS MOBILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 542 KEYWDS BDH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,V.V.LUNIN REVDAT 2 11-OCT-23 6VSP 1 REMARK REVDAT 1 23-DEC-20 6VSP 0 JRNL AUTH V.SUBRAMANIAN,V.V.LUNIN,S.J.FARMER,M.ALAHUHTA,K.T.MOORE, JRNL AUTH 2 A.HO,Y.B.CHAUDHARI,M.ZHANG,M.E.HIMMEL,S.R.DECKER JRNL TITL PHYLOGENETICS-BASED IDENTIFICATION AND CHARACTERIZATION OF A JRNL TITL 2 SUPERIOR 2,3-BUTANEDIOL DEHYDROGENASE FOR ZYMOMONAS MOBILIS JRNL TITL 3 EXPRESSION. JRNL REF BIOTECHNOL BIOFUELS V. 13 186 2020 JRNL REFN ESSN 1754-6834 JRNL PMID 33292448 JRNL DOI 10.1186/S13068-020-01820-X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.792 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2715 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 151 REMARK 3 SOLVENT ATOMS : 539 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11300 REMARK 3 B22 (A**2) : -0.11300 REMARK 3 B33 (A**2) : 0.22600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4011 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3762 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5460 ; 1.486 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8682 ; 1.404 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 7.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;33.734 ;22.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;13.587 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4612 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 815 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 834 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 134 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1932 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 409 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.142 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2081 ; 1.968 ; 2.297 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2080 ; 1.964 ; 2.295 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2617 ; 2.876 ; 3.432 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2618 ; 2.878 ; 3.435 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 2.631 ; 2.712 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1931 ; 2.631 ; 2.712 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2843 ; 4.006 ; 3.925 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2844 ; 4.006 ; 3.925 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6VSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HELIOS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39724 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.32 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10870 REMARK 200 FOR THE DATA SET : 18.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74790 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 6VSM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE, PH 6-7, 6-15% REMARK 280 W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.47400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.33750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.33750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.21100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.33750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.33750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.73700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.33750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.33750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.21100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.33750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.33750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.73700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.47400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 MET B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 VAL B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 112 -60.80 -106.35 REMARK 500 ALA A 137 -125.68 -87.50 REMARK 500 ALA A 148 52.91 -155.06 REMARK 500 SER A 182 -142.38 -91.67 REMARK 500 SER A 182 -142.97 -90.90 REMARK 500 VAL A 237 70.77 -118.37 REMARK 500 ILE B 112 -61.77 -105.87 REMARK 500 ALA B 137 -127.34 -89.56 REMARK 500 SER B 138 155.82 179.99 REMARK 500 ALA B 148 54.47 -156.99 REMARK 500 SER B 182 -149.33 -85.58 REMARK 500 LEU B 183 117.08 -39.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 691 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 692 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 693 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 645 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 646 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 187 O REMARK 620 2 ASN A 190 OD1 86.9 REMARK 620 3 HOH A 401 O 93.9 93.3 REMARK 620 4 HOH A 506 O 83.3 97.5 168.6 REMARK 620 5 HOH A 646 O 93.5 174.0 92.7 76.6 REMARK 620 6 HOH B 419 O 158.2 113.9 91.5 87.3 65.0 REMARK 620 7 HOH B 419 O 156.4 77.7 69.6 116.1 103.7 43.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 182 OG REMARK 620 2 LEU B 183 O 75.4 REMARK 620 3 VAL B 237 O 91.8 160.6 REMARK 620 N 1 2 DBREF 6VSP A 2 251 UNP H9XP47 H9XP47_SERMA 2 251 DBREF 6VSP B 2 251 UNP H9XP47 H9XP47_SERMA 2 251 SEQADV 6VSP MET A -12 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -11 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -10 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -9 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -8 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -7 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS A -6 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLU A -5 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP ASN A -4 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP LEU A -3 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP TYR A -2 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP PHE A -1 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLN A 0 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLY A 1 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP ALA A 247 UNP H9XP47 GLN 247 ENGINEERED MUTATION SEQADV 6VSP MET B -12 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -11 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -10 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -9 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -8 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -7 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP HIS B -6 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLU B -5 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP ASN B -4 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP LEU B -3 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP TYR B -2 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP PHE B -1 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLN B 0 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP GLY B 1 UNP H9XP47 EXPRESSION TAG SEQADV 6VSP ALA B 247 UNP H9XP47 GLN 247 ENGINEERED MUTATION SEQRES 1 A 264 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 264 GLY ARG PHE ASP ASN LYS VAL VAL VAL ILE THR GLY ALA SEQRES 3 A 264 GLY ASN GLY MET GLY GLU ALA ALA ALA ARG ARG PHE SER SEQRES 4 A 264 ALA GLU GLY ALA ILE VAL VAL LEU ALA ASP TRP ALA LYS SEQRES 5 A 264 GLU ALA VAL ASP LYS VAL ALA ALA SER LEU PRO LYS GLY SEQRES 6 A 264 ARG ALA MET ALA VAL HIS ILE ASP VAL SER ASP HIS VAL SEQRES 7 A 264 ALA VAL GLU LYS MET MET ASN GLU VAL ALA GLU LYS LEU SEQRES 8 A 264 GLY ARG ILE ASP VAL LEU LEU ASN ASN ALA GLY VAL HIS SEQRES 9 A 264 VAL ALA GLY SER VAL LEU GLU THR SER ILE ASP ASP TRP SEQRES 10 A 264 ARG ARG ILE ALA GLY VAL ASP ILE ASP GLY VAL VAL PHE SEQRES 11 A 264 CYS SER LYS PHE ALA LEU PRO HIS LEU LEU LYS THR LYS SEQRES 12 A 264 GLY CYS ILE VAL ASN THR ALA SER VAL SER GLY LEU GLY SEQRES 13 A 264 GLY ASP TRP GLY ALA ALA TYR TYR CYS ALA ALA LYS GLY SEQRES 14 A 264 ALA VAL VAL ASN LEU THR ARG ALA MET ALA LEU ASP HIS SEQRES 15 A 264 GLY GLY ASP GLY VAL ARG ILE ASN SER VAL CYS PRO SER SEQRES 16 A 264 LEU VAL LYS THR ASN MET THR ASN GLY TRP PRO GLN GLU SEQRES 17 A 264 ILE ARG ASP LYS PHE ASN GLU ARG ILE ALA LEU GLY ARG SEQRES 18 A 264 ALA ALA GLU PRO GLU GLU VAL ALA ALA VAL MET ALA PHE SEQRES 19 A 264 LEU ALA SER ASP ASP ALA SER PHE ILE ASN GLY ALA ASN SEQRES 20 A 264 ILE PRO VAL ASP GLY GLY ALA THR ALA SER ASP GLY ALA SEQRES 21 A 264 PRO LYS ILE VAL SEQRES 1 B 264 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 264 GLY ARG PHE ASP ASN LYS VAL VAL VAL ILE THR GLY ALA SEQRES 3 B 264 GLY ASN GLY MET GLY GLU ALA ALA ALA ARG ARG PHE SER SEQRES 4 B 264 ALA GLU GLY ALA ILE VAL VAL LEU ALA ASP TRP ALA LYS SEQRES 5 B 264 GLU ALA VAL ASP LYS VAL ALA ALA SER LEU PRO LYS GLY SEQRES 6 B 264 ARG ALA MET ALA VAL HIS ILE ASP VAL SER ASP HIS VAL SEQRES 7 B 264 ALA VAL GLU LYS MET MET ASN GLU VAL ALA GLU LYS LEU SEQRES 8 B 264 GLY ARG ILE ASP VAL LEU LEU ASN ASN ALA GLY VAL HIS SEQRES 9 B 264 VAL ALA GLY SER VAL LEU GLU THR SER ILE ASP ASP TRP SEQRES 10 B 264 ARG ARG ILE ALA GLY VAL ASP ILE ASP GLY VAL VAL PHE SEQRES 11 B 264 CYS SER LYS PHE ALA LEU PRO HIS LEU LEU LYS THR LYS SEQRES 12 B 264 GLY CYS ILE VAL ASN THR ALA SER VAL SER GLY LEU GLY SEQRES 13 B 264 GLY ASP TRP GLY ALA ALA TYR TYR CYS ALA ALA LYS GLY SEQRES 14 B 264 ALA VAL VAL ASN LEU THR ARG ALA MET ALA LEU ASP HIS SEQRES 15 B 264 GLY GLY ASP GLY VAL ARG ILE ASN SER VAL CYS PRO SER SEQRES 16 B 264 LEU VAL LYS THR ASN MET THR ASN GLY TRP PRO GLN GLU SEQRES 17 B 264 ILE ARG ASP LYS PHE ASN GLU ARG ILE ALA LEU GLY ARG SEQRES 18 B 264 ALA ALA GLU PRO GLU GLU VAL ALA ALA VAL MET ALA PHE SEQRES 19 B 264 LEU ALA SER ASP ASP ALA SER PHE ILE ASN GLY ALA ASN SEQRES 20 B 264 ILE PRO VAL ASP GLY GLY ALA THR ALA SER ASP GLY ALA SEQRES 21 B 264 PRO LYS ILE VAL HET NAD A 301 44 HET NAD A 302 44 HET GOL A 303 6 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET NA A 308 1 HET ADP B 301 27 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET NA B 305 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 GOL C3 H8 O3 FORMUL 6 EDO 7(C2 H6 O2) FORMUL 10 NA 2(NA 1+) FORMUL 11 ADP C10 H15 N5 O10 P2 FORMUL 16 HOH *539(H2 O) HELIX 1 AA1 ASN A 15 GLU A 28 1 14 HELIX 2 AA2 ALA A 38 SER A 48 1 11 HELIX 3 AA3 ASP A 63 GLY A 79 1 17 HELIX 4 AA4 SER A 100 ILE A 112 1 13 HELIX 5 AA5 ILE A 112 LYS A 130 1 19 HELIX 6 AA6 SER A 138 LEU A 142 5 5 HELIX 7 AA7 ALA A 148 GLY A 170 1 23 HELIX 8 AA8 GLY A 171 GLY A 173 5 3 HELIX 9 AA9 PRO A 193 ILE A 204 1 12 HELIX 10 AB1 GLU A 211 ALA A 223 1 13 HELIX 11 AB2 SER A 224 SER A 228 5 5 HELIX 12 AB3 GLY A 240 SER A 244 5 5 HELIX 13 AB4 ASN B 15 GLU B 28 1 14 HELIX 14 AB5 LYS B 39 SER B 48 1 10 HELIX 15 AB6 ASP B 63 GLY B 79 1 17 HELIX 16 AB7 SER B 100 ILE B 112 1 13 HELIX 17 AB8 ILE B 112 LYS B 130 1 19 HELIX 18 AB9 SER B 138 LEU B 142 5 5 HELIX 19 AC1 ALA B 148 GLY B 170 1 23 HELIX 20 AC2 GLY B 171 GLY B 173 5 3 HELIX 21 AC3 THR B 186 GLY B 191 1 6 HELIX 22 AC4 PRO B 193 ILE B 204 1 12 HELIX 23 AC5 GLU B 211 ALA B 223 1 13 HELIX 24 AC6 SER B 224 SER B 228 5 5 HELIX 25 AC7 GLY B 240 SER B 244 5 5 SHEET 1 AA1 7 ALA A 54 HIS A 58 0 SHEET 2 AA1 7 ILE A 31 ASP A 36 1 N LEU A 34 O MET A 55 SHEET 3 AA1 7 VAL A 7 THR A 11 1 N ILE A 10 O VAL A 33 SHEET 4 AA1 7 VAL A 83 ASN A 86 1 O LEU A 85 N VAL A 9 SHEET 5 AA1 7 CYS A 132 THR A 136 1 O THR A 136 N ASN A 86 SHEET 6 AA1 7 ARG A 175 PRO A 181 1 O ASN A 177 N ASN A 135 SHEET 7 AA1 7 ASN A 234 VAL A 237 1 O ILE A 235 N CYS A 180 SHEET 1 AA2 7 ALA B 54 HIS B 58 0 SHEET 2 AA2 7 ILE B 31 ASP B 36 1 N LEU B 34 O MET B 55 SHEET 3 AA2 7 VAL B 7 THR B 11 1 N VAL B 8 O VAL B 33 SHEET 4 AA2 7 VAL B 83 ASN B 86 1 O LEU B 85 N VAL B 9 SHEET 5 AA2 7 CYS B 132 THR B 136 1 O VAL B 134 N LEU B 84 SHEET 6 AA2 7 ARG B 175 PRO B 181 1 O ASN B 177 N ASN B 135 SHEET 7 AA2 7 ASN B 234 VAL B 237 1 O ILE B 235 N CYS B 180 LINK O ASN A 187 NA NA A 308 1555 1555 2.18 LINK OD1 ASN A 190 NA NA A 308 1555 1555 2.35 LINK NA NA A 308 O HOH A 401 1555 1555 2.40 LINK NA NA A 308 O HOH A 506 1555 1555 2.70 LINK NA NA A 308 O HOH A 646 1555 1555 2.78 LINK NA NA A 308 O AHOH B 419 1555 6555 2.42 LINK NA NA A 308 O BHOH B 419 1555 6555 2.26 LINK OG SER B 182 NA NA B 305 1555 1555 2.85 LINK O LEU B 183 NA NA B 305 1555 1555 3.13 LINK O VAL B 237 NA NA B 305 1555 1555 2.76 CRYST1 108.675 108.675 82.948 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012056 0.00000