HEADER LIGASE 12-FEB-20 6VT5 TITLE NAEGLERIA GRUBERI RNA LIGASE R4A K121A MUTANT APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA GRUBERI; SOURCE 3 ORGANISM_COMMON: AMOEBA; SOURCE 4 ORGANISM_TAXID: 5762; SOURCE 5 GENE: NAEGRDRAFT_82186; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, ADENYLYLTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.UNCIULEAC,Y.GOLDGUR,S.SHUMAN REVDAT 4 11-OCT-23 6VT5 1 REMARK REVDAT 3 10-JUN-20 6VT5 1 JRNL REVDAT 2 06-MAY-20 6VT5 1 JRNL REVDAT 1 08-APR-20 6VT5 0 JRNL AUTH M.C.UNCIULEAC,Y.GOLDGUR,S.SHUMAN JRNL TITL CAVEAT MUTATOR: ALANINE SUBSTITUTIONS FOR CONSERVED AMINO JRNL TITL 2 ACIDS IN RNA LIGASE ELICIT UNEXPECTED REARRANGEMENTS OF THE JRNL TITL 3 ACTIVE SITE FOR LYSINE ADENYLYLATION. JRNL REF NUCLEIC ACIDS RES. V. 48 5603 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32315072 JRNL DOI 10.1093/NAR/GKAA238 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 58945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.290 REMARK 3 FREE R VALUE TEST SET COUNT : 3706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4900 - 5.3200 0.85 2011 140 0.1525 0.1733 REMARK 3 2 5.3100 - 4.2200 0.80 1855 129 0.1396 0.1463 REMARK 3 3 4.2200 - 3.6900 0.82 1934 127 0.1609 0.1545 REMARK 3 4 3.6800 - 3.3500 0.85 1977 136 0.1721 0.1890 REMARK 3 5 3.3500 - 3.1100 0.81 1890 121 0.1898 0.2090 REMARK 3 6 3.1100 - 2.9300 0.86 2033 127 0.1897 0.2547 REMARK 3 7 2.9300 - 2.7800 0.89 2082 131 0.1928 0.2285 REMARK 3 8 2.7800 - 2.6600 0.90 2139 147 0.2090 0.2605 REMARK 3 9 2.6600 - 2.5600 0.92 2170 161 0.2020 0.2949 REMARK 3 10 2.5600 - 2.4700 0.89 2068 150 0.2200 0.2609 REMARK 3 11 2.4700 - 2.3900 0.91 2121 141 0.2210 0.2676 REMARK 3 12 2.3900 - 2.3200 0.92 2162 143 0.2189 0.3143 REMARK 3 13 2.3200 - 2.2600 0.93 2184 150 0.2236 0.2680 REMARK 3 14 2.2600 - 2.2100 0.93 2180 134 0.2249 0.2994 REMARK 3 15 2.2100 - 2.1600 0.94 2282 151 0.2239 0.2910 REMARK 3 16 2.1600 - 2.1100 0.95 2196 149 0.2296 0.2750 REMARK 3 17 2.1100 - 2.0700 0.94 2155 151 0.2414 0.3132 REMARK 3 18 2.0700 - 2.0300 0.91 2184 151 0.2570 0.2929 REMARK 3 19 2.0300 - 1.9900 0.93 2119 139 0.2570 0.2759 REMARK 3 20 1.9900 - 1.9600 0.95 2245 157 0.2486 0.2963 REMARK 3 21 1.9600 - 1.9300 0.95 2254 145 0.2555 0.2912 REMARK 3 22 1.9300 - 1.9000 0.95 2220 149 0.2483 0.2869 REMARK 3 23 1.9000 - 1.8700 0.95 2254 149 0.2716 0.3026 REMARK 3 24 1.8700 - 1.8400 0.95 2166 141 0.2714 0.3320 REMARK 3 25 1.8400 - 1.8200 0.95 2242 151 0.2850 0.3218 REMARK 3 26 1.8200 - 1.8000 0.91 2116 136 0.3152 0.4339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8287 15.1631 16.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.1968 REMARK 3 T33: 0.2637 T12: -0.0230 REMARK 3 T13: -0.0579 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.6796 L22: 2.2793 REMARK 3 L33: 1.0948 L12: -0.4939 REMARK 3 L13: 0.5919 L23: -0.4274 REMARK 3 S TENSOR REMARK 3 S11: -0.2186 S12: 0.1146 S13: 0.3454 REMARK 3 S21: 0.2584 S22: -0.0031 S23: -0.1355 REMARK 3 S31: -0.2412 S32: 0.0848 S33: 0.1658 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9172 -4.4310 5.5399 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.2382 REMARK 3 T33: 0.2394 T12: -0.0091 REMARK 3 T13: -0.0248 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.0887 L22: 1.1750 REMARK 3 L33: 1.4087 L12: 0.0736 REMARK 3 L13: -0.0858 L23: 0.9875 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.0409 S13: -0.0204 REMARK 3 S21: -0.1991 S22: 0.0271 S23: -0.0167 REMARK 3 S31: -0.0810 S32: 0.1357 S33: -0.0203 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4066 -15.1508 5.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.1848 REMARK 3 T33: 0.2211 T12: -0.0311 REMARK 3 T13: -0.0257 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.8202 L22: 1.7011 REMARK 3 L33: 1.9769 L12: -0.4312 REMARK 3 L13: -0.6533 L23: 1.3071 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0009 S13: -0.1245 REMARK 3 S21: -0.0224 S22: -0.0090 S23: 0.0657 REMARK 3 S31: 0.0335 S32: 0.0718 S33: 0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58945 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5COT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE NGRRNLR4A-K121A PROTEIN SAMPLE REMARK 280 (10.2 MG/ML) WAS MIXED WITH EQUAL VOLUME (1 UL) OF 0.1 M HEPES REMARK 280 PH 6.5, 30% PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.89200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.44600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 646 O HOH A 755 1.86 REMARK 500 O HOH A 478 O HOH A 686 2.03 REMARK 500 OD1 ASP A 183 O HOH A 401 2.04 REMARK 500 O HOH A 627 O HOH A 729 2.04 REMARK 500 O ASP A 72 O HOH A 402 2.05 REMARK 500 OD1 ASP A 99 O HOH A 403 2.05 REMARK 500 O HOH A 465 O HOH A 556 2.05 REMARK 500 O HOH A 499 O HOH A 613 2.09 REMARK 500 NH2 ARG A 100 O HOH A 404 2.09 REMARK 500 O HOH A 495 O HOH A 725 2.10 REMARK 500 OG1 THR A 140 O HOH A 405 2.12 REMARK 500 O LYS A 161 O HOH A 406 2.14 REMARK 500 OE2 GLU A 40 O HOH A 407 2.15 REMARK 500 OD2 ASP A 252 CE LYS A 255 2.15 REMARK 500 OE2 GLU A 51 O HOH A 408 2.16 REMARK 500 OE2 GLU A 312 O HOH A 409 2.18 REMARK 500 O HOH A 474 O HOH A 757 2.18 REMARK 500 OD1 ASN A 272 O HOH A 410 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 87 O GLU A 158 3555 1.99 REMARK 500 NZ LYS A 42 OE1 GLU A 231 1565 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 87 CG - CD - NE ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 87 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -130.91 50.50 REMARK 500 ASP A 53 -4.88 80.04 REMARK 500 ASP A 59 102.96 -163.15 REMARK 500 ARG A 87 44.79 74.90 REMARK 500 THR A 128 -77.00 -44.39 REMARK 500 GLU A 159 25.04 -77.75 REMARK 500 ASP A 182 -121.88 52.01 REMARK 500 ASP A 183 54.63 -96.09 REMARK 500 THR A 277 56.68 -106.13 REMARK 500 ASN A 290 53.78 -165.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VT5 A 1 339 UNP D2W2Z5 D2W2Z5_NAEGR 1 339 SEQADV 6VT5 SER A 0 UNP D2W2Z5 EXPRESSION TAG SEQADV 6VT5 ALA A 4 UNP D2W2Z5 ARG 4 ENGINEERED MUTATION SEQADV 6VT5 ALA A 121 UNP D2W2Z5 LYS 121 ENGINEERED MUTATION SEQRES 1 A 340 SER MET GLY VAL ALA LYS LEU ALA THR ILE ARG THR ALA SEQRES 2 A 340 GLY GLU ILE THR PRO ILE ALA GLY ALA GLU ALA ILE GLU SEQRES 3 A 340 CYS CYS HIS VAL ASP GLY TRP THR CYS VAL ILE LYS LYS SEQRES 4 A 340 GLY GLU PHE LYS GLN GLY ASP ARG GLY VAL TYR PHE GLU SEQRES 5 A 340 ILE ASP SER PHE ILE LYS GLU ASP ASN ASP ARG TYR PRO SEQRES 6 A 340 MET LEU SER LYS GLN VAL ILE ASP TYR GLU GLY GLN ARG SEQRES 7 A 340 GLY THR ARG LEU ARG THR ALA ARG LEU ARG GLY GLN LEU SEQRES 8 A 340 SER GLN GLY LEU PHE LEU PRO MET ASP ARG PHE PRO GLU SEQRES 9 A 340 LEU ALA SER ASN GLN VAL GLY ASP ASP VAL THR GLU ILE SEQRES 10 A 340 LEU GLY ILE THR ALA TRP GLU PRO PRO ILE SER THR ASN SEQRES 11 A 340 LEU SER GLY GLU ILE LEU GLY GLU PHE PRO THR PHE ILE SEQRES 12 A 340 SER LYS THR ASP GLN GLU ARG VAL GLN ASN LEU ILE PRO SEQRES 13 A 340 GLN ILE GLU GLU ASN LYS GLY GLN LYS PHE GLU VAL THR SEQRES 14 A 340 VAL LYS LEU ASP GLY SER SER MET THR VAL TYR ARG LYS SEQRES 15 A 340 ASP ASP HIS ILE GLY VAL CYS GLY ARG ASN TRP GLU LEU SEQRES 16 A 340 ARG GLU THR ALA THR ASN ALA GLN TRP HIS ALA ALA ARG SEQRES 17 A 340 ARG ASN LYS MET ILE GLU GLY LEU GLN PHE LEU ASN ARG SEQRES 18 A 340 ASN LEU ALA LEU GLN GLY GLU ILE ILE GLY GLU SER ILE SEQRES 19 A 340 GLN GLY ASN LEU GLU LYS LEU LYS GLY GLN ASP PHE TYR SEQRES 20 A 340 LEU PHE ASP ILE TYR ASP ILE ASP LYS ALA GLN TYR LEU SEQRES 21 A 340 THR PRO ILE GLU ARG GLN SER LEU VAL LYS GLN LEU ASN SEQRES 22 A 340 ASP ASN GLY PHE THR VAL LYS HIS VAL PRO ILE LEU ASP SEQRES 23 A 340 ASP LEU GLU LEU ASN HIS THR ALA GLU GLN ILE LEU ALA SEQRES 24 A 340 MET ALA ASP GLY PRO SER LEU ASN LYS ASN VAL LYS ARG SEQRES 25 A 340 GLU GLY LEU VAL PHE LYS ARG LEU ASP GLY LYS PHE SER SEQRES 26 A 340 PHE LYS ALA ILE SER ASN ALA TYR LEU GLU LYS HIS LYS SEQRES 27 A 340 ASP ARG FORMUL 2 HOH *367(H2 O) HELIX 1 AA1 TYR A 63 LYS A 68 5 6 HELIX 2 AA2 ASP A 99 ALA A 105 5 7 HELIX 3 AA3 SER A 127 SER A 131 5 5 HELIX 4 AA4 ARG A 149 ASN A 152 5 4 HELIX 5 AA5 LEU A 153 GLU A 159 1 7 HELIX 6 AA6 ASN A 200 ASN A 209 1 10 HELIX 7 AA7 LYS A 210 ASN A 219 1 10 HELIX 8 AA8 THR A 260 ASN A 274 1 15 HELIX 9 AA9 THR A 292 ASP A 301 1 10 HELIX 10 AB1 SER A 329 HIS A 336 1 8 SHEET 1 AA1 3 ALA A 7 THR A 11 0 SHEET 2 AA1 3 ARG A 46 PHE A 50 -1 O TYR A 49 N THR A 8 SHEET 3 AA1 3 LEU A 94 PRO A 97 -1 O LEU A 94 N PHE A 50 SHEET 1 AA2 3 ILE A 15 PRO A 17 0 SHEET 2 AA2 3 ILE A 24 VAL A 29 -1 O CYS A 26 N THR A 16 SHEET 3 AA2 3 TRP A 32 LYS A 37 -1 O CYS A 34 N CYS A 27 SHEET 1 AA3 4 VAL A 70 TYR A 73 0 SHEET 2 AA3 4 GLN A 76 ARG A 80 -1 O GLY A 78 N ILE A 71 SHEET 3 AA3 4 SER A 54 LYS A 57 -1 N ILE A 56 O THR A 79 SHEET 4 AA3 4 THR A 120 ALA A 121 -1 O THR A 120 N PHE A 55 SHEET 1 AA4 2 ALA A 84 LEU A 86 0 SHEET 2 AA4 2 GLN A 89 SER A 91 -1 O SER A 91 N ALA A 84 SHEET 1 AA5 7 ILE A 134 GLU A 137 0 SHEET 2 AA5 7 TRP A 192 LEU A 194 -1 O GLU A 193 N LEU A 135 SHEET 3 AA5 7 ILE A 185 CYS A 188 -1 N VAL A 187 O LEU A 194 SHEET 4 AA5 7 SER A 174 ARG A 180 -1 N THR A 177 O CYS A 188 SHEET 5 AA5 7 LEU A 222 GLY A 230 -1 O LEU A 224 N VAL A 178 SHEET 6 AA5 7 GLN A 243 ASP A 252 -1 O PHE A 248 N GLN A 225 SHEET 7 AA5 7 GLN A 257 TYR A 258 -1 O GLN A 257 N ASP A 252 SHEET 1 AA6 7 ILE A 134 GLU A 137 0 SHEET 2 AA6 7 TRP A 192 LEU A 194 -1 O GLU A 193 N LEU A 135 SHEET 3 AA6 7 ILE A 185 CYS A 188 -1 N VAL A 187 O LEU A 194 SHEET 4 AA6 7 SER A 174 ARG A 180 -1 N THR A 177 O CYS A 188 SHEET 5 AA6 7 LEU A 222 GLY A 230 -1 O LEU A 224 N VAL A 178 SHEET 6 AA6 7 GLN A 243 ASP A 252 -1 O PHE A 248 N GLN A 225 SHEET 7 AA6 7 LYS A 279 HIS A 280 1 O LYS A 279 N LEU A 247 SHEET 1 AA7 4 LEU A 287 GLU A 288 0 SHEET 2 AA7 4 LYS A 164 LYS A 170 -1 N PHE A 165 O LEU A 287 SHEET 3 AA7 4 GLY A 313 ARG A 318 -1 O LYS A 317 N GLU A 166 SHEET 4 AA7 4 SER A 324 ILE A 328 -1 O PHE A 325 N PHE A 316 CRYST1 55.713 55.713 100.338 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017949 0.010363 0.000000 0.00000 SCALE2 0.000000 0.020726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009966 0.00000