HEADER LIGASE 12-FEB-20 6VT8 TITLE NAEGLERIA GRUBERI RNA LIGASE E312A MUTANT WITH AMP AND MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA GRUBERI; SOURCE 3 ORGANISM_COMMON: AMOEBA; SOURCE 4 ORGANISM_TAXID: 5762; SOURCE 5 GENE: NAEGRDRAFT_82186; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, ADENYLYLTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.UNCIULEAC,Y.GOLDGUR,S.SHUMAN REVDAT 4 11-OCT-23 6VT8 1 LINK REVDAT 3 10-JUN-20 6VT8 1 JRNL REVDAT 2 06-MAY-20 6VT8 1 JRNL REVDAT 1 08-APR-20 6VT8 0 JRNL AUTH M.C.UNCIULEAC,Y.GOLDGUR,S.SHUMAN JRNL TITL CAVEAT MUTATOR: ALANINE SUBSTITUTIONS FOR CONSERVED AMINO JRNL TITL 2 ACIDS IN RNA LIGASE ELICIT UNEXPECTED REARRANGEMENTS OF THE JRNL TITL 3 ACTIVE SITE FOR LYSINE ADENYLYLATION. JRNL REF NUCLEIC ACIDS RES. V. 48 5603 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32315072 JRNL DOI 10.1093/NAR/GKAA238 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 42536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4100 - 5.8990 0.96 1572 152 0.1416 0.1644 REMARK 3 2 5.8990 - 4.6898 0.96 1557 140 0.1479 0.1989 REMARK 3 3 4.6898 - 4.0992 0.93 1479 135 0.1304 0.1615 REMARK 3 4 4.0992 - 3.7254 0.91 1474 147 0.1452 0.2008 REMARK 3 5 3.7254 - 3.4590 0.90 1433 126 0.1514 0.1866 REMARK 3 6 3.4590 - 3.2554 0.91 1505 148 0.1697 0.1846 REMARK 3 7 3.2554 - 3.0926 0.92 1451 151 0.1836 0.2325 REMARK 3 8 3.0926 - 2.9581 0.93 1542 136 0.1915 0.2140 REMARK 3 9 2.9581 - 2.8444 0.93 1517 144 0.2020 0.2965 REMARK 3 10 2.8444 - 2.7463 0.93 1468 139 0.2022 0.2790 REMARK 3 11 2.7463 - 2.6605 0.93 1545 140 0.2135 0.2505 REMARK 3 12 2.6605 - 2.5845 0.93 1496 146 0.2143 0.3160 REMARK 3 13 2.5845 - 2.5165 0.93 1506 128 0.2205 0.2706 REMARK 3 14 2.5165 - 2.4552 0.93 1486 161 0.2276 0.2975 REMARK 3 15 2.4552 - 2.3994 0.92 1475 136 0.2221 0.2860 REMARK 3 16 2.3994 - 2.3484 0.93 1509 164 0.2202 0.2518 REMARK 3 17 2.3484 - 2.3014 0.92 1457 139 0.2312 0.2642 REMARK 3 18 2.3014 - 2.2580 0.92 1535 110 0.2242 0.2752 REMARK 3 19 2.2580 - 2.2177 0.92 1484 143 0.2459 0.3207 REMARK 3 20 2.2177 - 2.1801 0.92 1496 155 0.2586 0.2857 REMARK 3 21 2.1801 - 2.1450 0.92 1544 139 0.2716 0.2937 REMARK 3 22 2.1450 - 2.1120 0.91 1408 122 0.2739 0.3250 REMARK 3 23 2.1120 - 2.0809 0.92 1487 155 0.2626 0.3365 REMARK 3 24 2.0809 - 2.0516 0.91 1482 132 0.2907 0.3320 REMARK 3 25 2.0516 - 2.0239 0.91 1472 162 0.3187 0.3211 REMARK 3 26 2.0239 - 1.9980 0.88 1461 145 0.3121 0.3865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.998 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5COT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NGRRNLE312A (9.1 MG/ML) WAS ADJUSTED REMARK 280 TO 2 MM ATP AND 5 MM MNCL2 AND INCUBATED FOR 15 MIN ON ICE REMARK 280 BEFORE ALIQUOTS OF THE PROTEIN SOLUTION (1 UL) WERE MIXED ON A REMARK 280 COVERSLIP WITH AN EQUAL VOLUME OF PRECIPITANT SOLUTION REMARK 280 CONTAINING 0.1 M HEPES PH 6.5, 25% PEG6000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.06800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.53400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 324 O HOH A 501 2.03 REMARK 500 OH TYR A 63 O HOH A 502 2.05 REMARK 500 OE2 GLU A 51 O HOH A 503 2.08 REMARK 500 OD2 ASP A 146 O HOH A 504 2.08 REMARK 500 NH2 ARG A 149 O HOH A 505 2.09 REMARK 500 N ARG A 4 O HOH A 506 2.10 REMARK 500 O HOH A 539 O HOH A 574 2.11 REMARK 500 NZ LYS A 38 O HOH A 507 2.12 REMARK 500 O HOH A 678 O HOH A 738 2.15 REMARK 500 O HOH A 736 O HOH A 750 2.16 REMARK 500 O HOH A 759 O HOH A 764 2.17 REMARK 500 O HOH A 506 O HOH A 735 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 34 CB CYS A 34 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 65.52 -117.38 REMARK 500 ASP A 30 -129.12 52.87 REMARK 500 ASP A 53 -1.57 80.47 REMARK 500 ASP A 59 97.32 -171.74 REMARK 500 ASP A 182 -127.33 47.76 REMARK 500 LEU A 284 -167.96 -100.67 REMARK 500 ASN A 290 63.68 -157.37 REMARK 500 ASP A 338 37.09 -92.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 401 O1P REMARK 620 2 HOH A 564 O 106.1 REMARK 620 3 HOH A 625 O 169.8 84.2 REMARK 620 4 HOH A 662 O 86.7 167.2 83.1 REMARK 620 5 HOH A 674 O 94.4 100.6 83.1 79.1 REMARK 620 6 HOH A 721 O 89.3 83.4 92.3 95.9 173.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 DBREF 6VT8 A 1 339 UNP D2W2Z5 D2W2Z5_NAEGR 1 339 SEQADV 6VT8 SER A 0 UNP D2W2Z5 EXPRESSION TAG SEQADV 6VT8 ALA A 312 UNP D2W2Z5 GLU 312 ENGINEERED MUTATION SEQRES 1 A 340 SER MET GLY VAL ARG LYS LEU ALA THR ILE ARG THR ALA SEQRES 2 A 340 GLY GLU ILE THR PRO ILE ALA GLY ALA GLU ALA ILE GLU SEQRES 3 A 340 CYS CYS HIS VAL ASP GLY TRP THR CYS VAL ILE LYS LYS SEQRES 4 A 340 GLY GLU PHE LYS GLN GLY ASP ARG GLY VAL TYR PHE GLU SEQRES 5 A 340 ILE ASP SER PHE ILE LYS GLU ASP ASN ASP ARG TYR PRO SEQRES 6 A 340 MET LEU SER LYS GLN VAL ILE ASP TYR GLU GLY GLN ARG SEQRES 7 A 340 GLY THR ARG LEU ARG THR ALA ARG LEU ARG GLY GLN LEU SEQRES 8 A 340 SER GLN GLY LEU PHE LEU PRO MET ASP ARG PHE PRO GLU SEQRES 9 A 340 LEU ALA SER ASN GLN VAL GLY ASP ASP VAL THR GLU ILE SEQRES 10 A 340 LEU GLY ILE THR LYS TRP GLU PRO PRO ILE SER THR ASN SEQRES 11 A 340 LEU SER GLY GLU ILE LEU GLY GLU PHE PRO THR PHE ILE SEQRES 12 A 340 SER LYS THR ASP GLN GLU ARG VAL GLN ASN LEU ILE PRO SEQRES 13 A 340 GLN ILE GLU GLU ASN LYS GLY GLN LYS PHE GLU VAL THR SEQRES 14 A 340 VAL LYS LEU ASP GLY SER SER MET THR VAL TYR ARG LYS SEQRES 15 A 340 ASP ASP HIS ILE GLY VAL CYS GLY ARG ASN TRP GLU LEU SEQRES 16 A 340 ARG GLU THR ALA THR ASN ALA GLN TRP HIS ALA ALA ARG SEQRES 17 A 340 ARG ASN LYS MET ILE GLU GLY LEU GLN PHE LEU ASN ARG SEQRES 18 A 340 ASN LEU ALA LEU GLN GLY GLU ILE ILE GLY GLU SER ILE SEQRES 19 A 340 GLN GLY ASN LEU GLU LYS LEU LYS GLY GLN ASP PHE TYR SEQRES 20 A 340 LEU PHE ASP ILE TYR ASP ILE ASP LYS ALA GLN TYR LEU SEQRES 21 A 340 THR PRO ILE GLU ARG GLN SER LEU VAL LYS GLN LEU ASN SEQRES 22 A 340 ASP ASN GLY PHE THR VAL LYS HIS VAL PRO ILE LEU ASP SEQRES 23 A 340 ASP LEU GLU LEU ASN HIS THR ALA GLU GLN ILE LEU ALA SEQRES 24 A 340 MET ALA ASP GLY PRO SER LEU ASN LYS ASN VAL LYS ARG SEQRES 25 A 340 ALA GLY LEU VAL PHE LYS ARG LEU ASP GLY LYS PHE SER SEQRES 26 A 340 PHE LYS ALA ILE SER ASN ALA TYR LEU GLU LYS HIS LYS SEQRES 27 A 340 ASP ARG HET AMP A 401 22 HET MN A 402 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 MN MN 2+ FORMUL 4 HOH *267(H2 O) HELIX 1 AA1 TYR A 63 VAL A 70 5 8 HELIX 2 AA2 ASP A 99 ALA A 105 5 7 HELIX 3 AA3 SER A 127 SER A 131 5 5 HELIX 4 AA4 LEU A 153 ASN A 160 1 8 HELIX 5 AA5 ASN A 200 ASN A 209 1 10 HELIX 6 AA6 LYS A 210 ASN A 219 1 10 HELIX 7 AA7 THR A 260 ASN A 274 1 15 HELIX 8 AA8 THR A 292 ASP A 301 1 10 HELIX 9 AA9 SER A 329 HIS A 336 1 8 SHEET 1 AA1 3 ALA A 7 THR A 11 0 SHEET 2 AA1 3 ARG A 46 PHE A 50 -1 O TYR A 49 N THR A 8 SHEET 3 AA1 3 LEU A 94 PRO A 97 -1 O LEU A 94 N PHE A 50 SHEET 1 AA2 3 ILE A 15 PRO A 17 0 SHEET 2 AA2 3 ILE A 24 VAL A 29 -1 O CYS A 26 N THR A 16 SHEET 3 AA2 3 TRP A 32 LYS A 37 -1 O CYS A 34 N CYS A 27 SHEET 1 AA3 4 ILE A 71 TYR A 73 0 SHEET 2 AA3 4 GLN A 76 ARG A 80 -1 O GLY A 78 N ILE A 71 SHEET 3 AA3 4 SER A 54 LYS A 57 -1 N ILE A 56 O THR A 79 SHEET 4 AA3 4 THR A 120 LYS A 121 -1 O THR A 120 N PHE A 55 SHEET 1 AA4 2 ALA A 84 LEU A 86 0 SHEET 2 AA4 2 GLN A 89 SER A 91 -1 O GLN A 89 N LEU A 86 SHEET 1 AA5 7 ILE A 134 GLU A 137 0 SHEET 2 AA5 7 TRP A 192 LEU A 194 -1 O GLU A 193 N LEU A 135 SHEET 3 AA5 7 HIS A 184 CYS A 188 -1 N VAL A 187 O LEU A 194 SHEET 4 AA5 7 SER A 174 LYS A 181 -1 N THR A 177 O CYS A 188 SHEET 5 AA5 7 LEU A 222 GLY A 230 -1 O LEU A 224 N VAL A 178 SHEET 6 AA5 7 GLN A 243 ASP A 252 -1 O ASP A 249 N GLN A 225 SHEET 7 AA5 7 GLN A 257 TYR A 258 -1 O GLN A 257 N ASP A 252 SHEET 1 AA6 7 ILE A 134 GLU A 137 0 SHEET 2 AA6 7 TRP A 192 LEU A 194 -1 O GLU A 193 N LEU A 135 SHEET 3 AA6 7 HIS A 184 CYS A 188 -1 N VAL A 187 O LEU A 194 SHEET 4 AA6 7 SER A 174 LYS A 181 -1 N THR A 177 O CYS A 188 SHEET 5 AA6 7 LEU A 222 GLY A 230 -1 O LEU A 224 N VAL A 178 SHEET 6 AA6 7 GLN A 243 ASP A 252 -1 O ASP A 249 N GLN A 225 SHEET 7 AA6 7 LYS A 279 HIS A 280 1 O LYS A 279 N LEU A 247 SHEET 1 AA7 5 GLU A 148 ARG A 149 0 SHEET 2 AA7 5 SER A 324 ILE A 328 1 O LYS A 326 N GLU A 148 SHEET 3 AA7 5 GLY A 313 ARG A 318 -1 N LEU A 314 O ALA A 327 SHEET 4 AA7 5 LYS A 164 VAL A 169 -1 N GLU A 166 O LYS A 317 SHEET 5 AA7 5 LEU A 287 GLU A 288 -1 O LEU A 287 N PHE A 165 LINK NZ LYS A 170 P AMP A 401 1555 1555 1.66 LINK O1P AMP A 401 MN MN A 402 1555 1555 2.10 LINK MN MN A 402 O HOH A 564 1555 1555 2.51 LINK MN MN A 402 O HOH A 625 1555 1555 2.07 LINK MN MN A 402 O HOH A 662 1555 1555 2.09 LINK MN MN A 402 O HOH A 674 1555 1555 2.41 LINK MN MN A 402 O HOH A 721 1555 1555 2.38 SITE 1 AC1 20 THR A 145 THR A 168 VAL A 169 LYS A 170 SITE 2 AC1 20 LEU A 171 SER A 175 GLU A 227 PHE A 248 SITE 3 AC1 20 VAL A 281 VAL A 315 LYS A 317 LYS A 326 SITE 4 AC1 20 ILE A 328 MN A 402 HOH A 547 HOH A 564 SITE 5 AC1 20 HOH A 597 HOH A 606 HOH A 662 HOH A 703 SITE 1 AC2 7 LYS A 170 AMP A 401 HOH A 564 HOH A 625 SITE 2 AC2 7 HOH A 662 HOH A 674 HOH A 721 CRYST1 54.941 54.941 100.602 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018201 0.010509 0.000000 0.00000 SCALE2 0.000000 0.021017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009940 0.00000