HEADER IMMUNE SYSTEM 13-FEB-20 6VTW TITLE DE NOVO PROTEIN DESIGN ENABLES THE PRECISE INDUCTION OF RSV- TITLE 2 NEUTRALIZING ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: S4_2.45; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DE NOVO DESIGNED IMMUNOGENS; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 101F FAB LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 101F FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2; SOURCE 4 ORGANISM_TAXID: 11259; SOURCE 5 OTHER_DETAILS: HEK293-6E CELL; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293-F CELL; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL: HEK293-F CELL KEYWDS DE NOVO DESIGNED, IMMUNOGENS, ANTIBODIES, IN VIVO, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.JARDETZKY,B.CORREIA REVDAT 6 30-OCT-24 6VTW 1 REMARK REVDAT 5 11-OCT-23 6VTW 1 REMARK REVDAT 4 10-JUN-20 6VTW 1 TITLE REVDAT 3 27-MAY-20 6VTW 1 JRNL REVDAT 2 20-MAY-20 6VTW 1 JRNL REVDAT 1 15-APR-20 6VTW 0 JRNL AUTH F.SESTERHENN,C.YANG,J.BONET,J.T.CRAMER,X.WEN,Y.WANG, JRNL AUTH 2 C.I.CHIANG,L.A.ABRIATA,I.KUCHARSKA,G.CASTORO,S.S.VOLLERS, JRNL AUTH 3 M.GALLOUX,E.DHEILLY,S.ROSSET,P.CORTHESY,S.GEORGEON, JRNL AUTH 4 M.VILLARD,C.A.RICHARD,D.DESCAMPS,T.DELGADO,E.ORICCHIO, JRNL AUTH 5 M.A.RAMEIX-WELTI,V.MAS,S.ERVIN,J.F.ELEOUET,S.RIFFAULT, JRNL AUTH 6 J.T.BATES,J.P.JULIEN,Y.LI,T.JARDETZKY,T.KREY,B.E.CORREIA JRNL TITL DE NOVO PROTEIN DESIGN ENABLES THE PRECISE INDUCTION OF JRNL TITL 2 RSV-NEUTRALIZING ANTIBODIES. JRNL REF SCIENCE V. 368 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 32409444 JRNL DOI 10.1126/SCIENCE.AAY5051 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0600 - 5.9500 1.00 1391 154 0.2266 0.2688 REMARK 3 2 5.9400 - 4.7200 1.00 1356 143 0.1756 0.2686 REMARK 3 3 4.7200 - 4.1300 1.00 1312 150 0.1584 0.2075 REMARK 3 4 4.1300 - 3.7500 1.00 1336 141 0.1799 0.2448 REMARK 3 5 3.7500 - 3.4800 1.00 1324 141 0.2074 0.2807 REMARK 3 6 3.4800 - 3.2800 1.00 1324 154 0.2178 0.3275 REMARK 3 7 3.2800 - 3.1100 1.00 1316 150 0.2367 0.3257 REMARK 3 8 3.1100 - 2.9800 1.00 1304 147 0.2484 0.3281 REMARK 3 9 2.9800 - 2.8600 1.00 1308 145 0.2504 0.3707 REMARK 3 10 2.8600 - 2.7600 1.00 1314 144 0.2600 0.3479 REMARK 3 11 2.7600 - 2.6800 0.96 1257 137 0.2673 0.4176 REMARK 3 12 2.6800 - 2.6000 0.89 1164 142 0.3084 0.3789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3769 REMARK 3 ANGLE : 1.926 5125 REMARK 3 CHIRALITY : 0.249 584 REMARK 3 PLANARITY : 0.017 653 REMARK 3 DIHEDRAL : 6.511 515 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -46.2207 -37.8662 -6.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.3611 REMARK 3 T33: 0.2648 T12: 0.0622 REMARK 3 T13: 0.0573 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 2.0450 L22: 2.1484 REMARK 3 L33: 1.2543 L12: 0.2029 REMARK 3 L13: 0.2947 L23: 0.4860 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.1531 S13: 0.1844 REMARK 3 S21: -0.0197 S22: 0.0230 S23: -0.0984 REMARK 3 S31: -0.1881 S32: -0.0827 S33: -0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000243163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 - 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07259 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85390 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3O41 REMARK 200 REMARK 200 REMARK: CUBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONTAINING 0.2 M MAGNESIUM ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE PH 6.5, 20 %(W/V) PEG 8000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.03067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.01533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.01533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.03067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG L 65 OD2 ASP L 86 1.57 REMARK 500 SG CYS A 15 SG CYS A 20 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 4 HD22 ASN L 142 3444 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO H 133 CD PRO H 133 N 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 36 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 CYS L 23 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 CYS L 92 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU H 155 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 THR H 198 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 109.69 -56.27 REMARK 500 LEU L 15 122.61 -32.68 REMARK 500 ALA L 54 -4.91 80.97 REMARK 500 ALA L 55 0.01 81.99 REMARK 500 ALA L 87 103.84 -59.53 REMARK 500 SER L 160 -56.21 -127.39 REMARK 500 THR H 198 -30.09 -132.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 26 10.22 REMARK 500 LYS L 187 -12.60 REMARK 500 THR H 198 -12.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VTW A 3 49 PDB 6VTW 6VTW 3 49 DBREF 6VTW L 1 219 PDB 6VTW 6VTW 1 219 DBREF 6VTW H 2 220 PDB 6VTW 6VTW 2 220 SEQRES 1 A 47 CYS SER VAL VAL VAL GLY GLU ASN TYR SER ILE LYS CYS SEQRES 2 A 47 ASP ALA THR LYS CYS THR ILE GLU ASP LYS ASN ARG GLY SEQRES 3 A 47 ILE ILE LYS THR VAL THR GLY SER ARG CYS GLU GLU LEU SEQRES 4 A 47 ALA LYS ALA VAL GLN LYS ALA GLN SEQRES 1 L 219 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 219 SER LEU GLY GLN ARG ALA THR ILE PHE CYS ARG ALA SER SEQRES 3 L 219 GLN SER VAL ASP TYR ASN GLY ILE SER TYR MET HIS TRP SEQRES 4 L 219 PHE GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 219 TYR ALA ALA SER ASN PRO GLU SER GLY ILE PRO ALA ARG SEQRES 6 L 219 PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 L 219 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 219 CYS GLN GLN ILE ILE GLU ASP PRO TRP THR PHE GLY GLY SEQRES 9 L 219 GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 219 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 219 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 219 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 219 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 219 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 219 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 219 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 219 VAL THR LYS SER PHE ASN ARG GLY GLU CYS GLY SEQRES 1 H 219 VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN PRO SEQRES 2 H 219 SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY PHE SEQRES 3 H 219 SER LEU SER THR SER GLY MET GLY VAL SER TRP ILE ARG SEQRES 4 H 219 GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS ILE SEQRES 5 H 219 TYR TRP ASP ASP ASP LYS ARG TYR ASN PRO SER LEU LYS SEQRES 6 H 219 SER ARG LEU THR ILE SER LYS ASP THR SER ARG ASN GLN SEQRES 7 H 219 VAL PHE LEU LYS ILE THR SER VAL ASP THR ALA ASP THR SEQRES 8 H 219 ALA THR TYR TYR CYS ALA ARG LEU TYR GLY PHE THR TYR SEQRES 9 H 219 GLY PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 219 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 219 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 219 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 219 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 219 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 219 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO FORMUL 4 HOH *94(H2 O) HELIX 1 AA1 ARG A 37 GLN A 49 1 13 HELIX 2 AA2 GLU L 83 ALA L 87 5 5 HELIX 3 AA3 SER L 125 SER L 131 1 7 HELIX 4 AA4 LYS L 187 LYS L 192 1 6 HELIX 5 AA5 LEU H 65 SER H 67 5 3 HELIX 6 AA6 THR H 75 ARG H 77 5 3 HELIX 7 AA7 ASP H 88 THR H 92 5 5 HELIX 8 AA8 SER H 134 LYS H 136 5 3 HELIX 9 AA9 SER H 163 ALA H 165 5 3 HELIX 10 AB1 SER H 194 LEU H 196 5 3 HELIX 11 AB2 LYS H 208 ASN H 211 5 4 SHEET 1 AA1 4 VAL A 6 VAL A 7 0 SHEET 2 AA1 4 TYR A 11 CYS A 15 -1 O ILE A 13 N VAL A 6 SHEET 3 AA1 4 LYS A 19 ASP A 24 -1 O THR A 21 N LYS A 14 SHEET 4 AA1 4 GLY A 28 THR A 34 -1 O GLY A 28 N ASP A 24 SHEET 1 AA2 4 LEU L 4 GLN L 6 0 SHEET 2 AA2 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA2 4 ASP L 74 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 4 AA2 4 PHE L 66 SER L 71 -1 N THR L 67 O ASN L 78 SHEET 1 AA3 6 SER L 10 SER L 14 0 SHEET 2 AA3 6 THR L 106 LYS L 111 1 O LYS L 111 N VAL L 13 SHEET 3 AA3 6 ALA L 88 GLN L 94 -1 N TYR L 90 O THR L 106 SHEET 4 AA3 6 MET L 37 GLN L 42 -1 N PHE L 40 O TYR L 91 SHEET 5 AA3 6 LYS L 49 TYR L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA3 6 ASN L 57 PRO L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA4 4 SER L 10 SER L 14 0 SHEET 2 AA4 4 THR L 106 LYS L 111 1 O LYS L 111 N VAL L 13 SHEET 3 AA4 4 ALA L 88 GLN L 94 -1 N TYR L 90 O THR L 106 SHEET 4 AA4 4 THR L 101 PHE L 102 -1 O THR L 101 N GLN L 94 SHEET 1 AA5 2 ASP L 30 TYR L 31 0 SHEET 2 AA5 2 ILE L 34 SER L 35 -1 O ILE L 34 N TYR L 31 SHEET 1 AA6 4 SER L 118 PHE L 122 0 SHEET 2 AA6 4 THR L 133 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA6 4 TYR L 177 SER L 186 -1 O LEU L 183 N VAL L 136 SHEET 4 AA6 4 SER L 163 VAL L 167 -1 N SER L 166 O SER L 180 SHEET 1 AA7 4 ALA L 157 LEU L 158 0 SHEET 2 AA7 4 LYS L 149 VAL L 154 -1 N VAL L 154 O ALA L 157 SHEET 3 AA7 4 VAL L 195 THR L 201 -1 O GLU L 199 N GLN L 151 SHEET 4 AA7 4 VAL L 209 ASN L 214 -1 O LYS L 211 N CYS L 198 SHEET 1 AA8 4 THR H 3 SER H 7 0 SHEET 2 AA8 4 LEU H 18 SER H 25 -1 O SER H 23 N LYS H 5 SHEET 3 AA8 4 GLN H 79 ILE H 84 -1 O VAL H 80 N CYS H 22 SHEET 4 AA8 4 LEU H 69 ASP H 74 -1 N SER H 72 O PHE H 81 SHEET 1 AA9 6 ILE H 11 LEU H 12 0 SHEET 2 AA9 6 THR H 114 VAL H 118 1 O THR H 117 N LEU H 12 SHEET 3 AA9 6 ALA H 93 TYR H 101 -1 N TYR H 95 O THR H 114 SHEET 4 AA9 6 MET H 34 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 AA9 6 GLU H 48 TYR H 54 -1 O LEU H 50 N TRP H 38 SHEET 6 AA9 6 LYS H 59 TYR H 61 -1 O ARG H 60 N HIS H 52 SHEET 1 AB1 4 ILE H 11 LEU H 12 0 SHEET 2 AB1 4 THR H 114 VAL H 118 1 O THR H 117 N LEU H 12 SHEET 3 AB1 4 ALA H 93 TYR H 101 -1 N TYR H 95 O THR H 114 SHEET 4 AB1 4 TYR H 109 TRP H 110 -1 O TYR H 109 N ARG H 99 SHEET 1 AB2 4 SER H 127 LEU H 131 0 SHEET 2 AB2 4 THR H 142 TYR H 152 -1 O LYS H 150 N SER H 127 SHEET 3 AB2 4 TYR H 183 PRO H 192 -1 O VAL H 191 N ALA H 143 SHEET 4 AB2 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB3 4 THR H 138 SER H 139 0 SHEET 2 AB3 4 THR H 142 TYR H 152 -1 O THR H 142 N SER H 139 SHEET 3 AB3 4 TYR H 183 PRO H 192 -1 O VAL H 191 N ALA H 143 SHEET 4 AB3 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB4 3 THR H 158 TRP H 161 0 SHEET 2 AB4 3 ILE H 202 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB4 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SSBOND 1 CYS A 3 CYS A 38 1555 1555 2.51 SSBOND 2 CYS L 23 CYS L 92 1555 1555 2.12 SSBOND 3 CYS L 138 CYS L 198 1555 1555 2.20 SSBOND 4 CYS H 22 CYS H 97 1555 1555 1.89 SSBOND 5 CYS H 147 CYS H 203 1555 1555 2.13 CRYST1 148.224 148.224 45.046 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006747 0.003895 0.000000 0.00000 SCALE2 0.000000 0.007790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022200 0.00000