HEADER RNA 15-FEB-20 6VUI TITLE METABOLITE-BOUND PREQ1 RIBOSWITCH WITH MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREQ1 RIBOSWITCH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 4 TENGCONGENSIS; SOURCE 5 ORGANISM_TAXID: 119072 KEYWDS PREQ1, PREQ0, QUEUOSINE, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, KEYWDS 2 PSEUDOKNOT, H-TYPE, RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.L.JENKINS,J.E.WEDEKIND REVDAT 6 11-OCT-23 6VUI 1 REMARK REVDAT 5 16-MAR-22 6VUI 1 REMARK REVDAT 4 26-AUG-20 6VUI 1 JRNL LINK REVDAT 3 15-JUL-20 6VUI 1 JRNL REVDAT 2 08-JUL-20 6VUI 1 AUTHOR JRNL REVDAT 1 24-JUN-20 6VUI 0 JRNL AUTH G.M.SCHROEDER,D.DUTTA,C.E.CAVENDER,J.L.JENKINS, JRNL AUTH 2 E.M.PRITCHETT,C.D.BAKER,J.M.ASHTON,D.H.MATHEWS,J.E.WEDEKIND JRNL TITL ANALYSIS OF A PREQ1-I RIBOSWITCH IN EFFECTOR-FREE AND BOUND JRNL TITL 2 STATES REVEALS A METABOLITE-PROGRAMMED NUCLEOBASE-STACKING JRNL TITL 3 SPINE THAT CONTROLS GENE REGULATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8146 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32597951 JRNL DOI 10.1093/NAR/GKAA546 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3395 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6200 - 5.3577 0.99 1338 138 0.1531 0.1810 REMARK 3 2 5.3577 - 4.2545 1.00 1315 148 0.1421 0.1628 REMARK 3 3 4.2545 - 3.7172 1.00 1322 143 0.1583 0.1818 REMARK 3 4 3.7172 - 3.3776 1.00 1338 143 0.1450 0.1883 REMARK 3 5 3.3776 - 3.1356 1.00 1328 133 0.1911 0.2057 REMARK 3 6 3.1356 - 2.9508 1.00 1318 149 0.2121 0.2363 REMARK 3 7 2.9508 - 2.8031 1.00 1319 146 0.3396 0.3751 REMARK 3 8 2.8031 - 2.6811 0.97 1290 141 0.5363 0.5265 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 800 REMARK 3 ANGLE : 0.753 1243 REMARK 3 CHIRALITY : 0.035 164 REMARK 3 PLANARITY : 0.005 34 REMARK 3 DIHEDRAL : 14.292 393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3363 35.4603 27.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.6982 T22: 1.0169 REMARK 3 T33: 0.8067 T12: 0.3551 REMARK 3 T13: 0.0476 T23: -0.2270 REMARK 3 L TENSOR REMARK 3 L11: 0.1832 L22: 0.8035 REMARK 3 L33: 0.8271 L12: 0.3513 REMARK 3 L13: 0.0131 L23: 0.3578 REMARK 3 S TENSOR REMARK 3 S11: 0.2685 S12: 0.5086 S13: -0.3674 REMARK 3 S21: -0.1358 S22: -0.3358 S23: -1.0354 REMARK 3 S31: 0.3993 S32: 0.3219 S33: -0.0972 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2013 39.5637 19.0263 REMARK 3 T TENSOR REMARK 3 T11: 0.8544 T22: 1.1242 REMARK 3 T33: 0.8893 T12: 0.2311 REMARK 3 T13: -0.0775 T23: -0.2365 REMARK 3 L TENSOR REMARK 3 L11: 0.8290 L22: 0.2437 REMARK 3 L33: 0.2216 L12: 0.2971 REMARK 3 L13: 0.3171 L23: 0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.8385 S12: 0.1838 S13: 0.7808 REMARK 3 S21: 0.1200 S22: 0.4007 S23: -0.6728 REMARK 3 S31: -0.1826 S32: 0.7757 S33: -0.0096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5170 36.0465 29.6041 REMARK 3 T TENSOR REMARK 3 T11: 0.7612 T22: 0.9126 REMARK 3 T33: 0.7064 T12: 0.2623 REMARK 3 T13: -0.0563 T23: -0.1746 REMARK 3 L TENSOR REMARK 3 L11: 1.1488 L22: 1.7168 REMARK 3 L33: 1.4346 L12: 1.1123 REMARK 3 L13: -0.7220 L23: -0.5256 REMARK 3 S TENSOR REMARK 3 S11: -0.1690 S12: 0.0614 S13: -0.2585 REMARK 3 S21: 0.2030 S22: 0.2068 S23: -0.1888 REMARK 3 S31: 0.8258 S32: 0.0958 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000244970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.699 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 37.625 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3Q50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA-CACODYLATE PH 7.0, 150 MM REMARK 280 KCL, 22% PEG-MME 2000, 5 MM MNCL2, 2 MM SPERMIDINE-HCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.69250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.69250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.69250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.69250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 29.69250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.69250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 106 LIES ON A SPECIAL POSITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 104 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 4 N7 REMARK 620 2 HOH A 205 O 99.3 REMARK 620 3 HOH A 212 O 84.1 92.7 REMARK 620 4 HOH A 213 O 83.6 177.1 87.9 REMARK 620 5 HOH A 216 O 96.2 86.2 178.9 93.2 REMARK 620 6 HOH A 218 O 166.6 93.0 90.0 84.1 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 N7 REMARK 620 2 HOH A 202 O 91.2 REMARK 620 3 HOH A 208 O 87.4 178.6 REMARK 620 4 HOH A 209 O 89.3 90.0 90.1 REMARK 620 5 HOH A 211 O 89.1 89.9 89.9 178.4 REMARK 620 6 HOH A 220 O 176.8 91.7 89.7 92.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 105 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 23 OP2 REMARK 620 2 HOH A 210 O 81.8 REMARK 620 3 HOH A 217 O 107.9 95.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 32 OP2 REMARK 620 2 G A 33 N7 93.3 REMARK 620 3 HOH A 203 O 178.1 88.6 REMARK 620 4 HOH A 204 O 88.5 177.9 89.6 REMARK 620 5 HOH A 206 O 89.8 93.0 89.6 88.1 REMARK 620 6 HOH A 207 O 90.2 88.6 90.3 90.2 178.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 107 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 32 OP1 REMARK 620 2 G A 33 OP2 110.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 106 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 201 O 73.7 REMARK 620 3 HOH A 219 O 89.9 119.0 REMARK 620 4 HOH A 219 O 118.9 90.0 144.9 REMARK 620 5 HOH A 221 O 84.8 142.3 91.0 73.6 REMARK 620 6 HOH A 221 O 142.3 84.9 73.6 91.1 128.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRF A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q50 RELATED DB: PDB REMARK 900 SAME RIBOSWITCH WITHOUT MNCL2 REMARK 900 RELATED ID: 3Q51 RELATED DB: PDB REMARK 900 RIBOSWITCH APO STATE WITHOUT MNCL2 DBREF 6VUI A 1 33 PDB 6VUI 6VUI 1 33 SEQRES 1 A 33 C U G G G U C G C A G U A SEQRES 2 A 33 A C C C C A G U U A A C A SEQRES 3 A 33 A A A C A A G HET PRF A 101 22 HET MN A 102 1 HET MN A 103 1 HET MN A 104 1 HET MN A 105 1 HET MN A 106 1 HET MN A 107 1 HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE HETNAM MN MANGANESE (II) ION FORMUL 2 PRF C7 H9 N5 O FORMUL 3 MN 6(MN 2+) FORMUL 9 HOH *21(H2 O) LINK N7 G A 4 MN MN A 104 1555 1555 2.43 LINK N7 G A 8 MN MN A 102 1555 1555 2.15 LINK OP2 A A 23 MN MN A 105 1555 1555 2.11 LINK OP2 A A 32 MN MN A 103 1555 1555 1.87 LINK OP1 A A 32 MN MN A 107 1555 1555 2.72 LINK N7 G A 33 MN MN A 103 1555 1555 2.00 LINK OP2 G A 33 MN MN A 107 1555 1555 2.05 LINK MN MN A 102 O HOH A 202 1555 1555 2.15 LINK MN MN A 102 O HOH A 208 1555 1555 2.01 LINK MN MN A 102 O HOH A 209 1555 1555 2.11 LINK MN MN A 102 O HOH A 211 1555 1555 2.14 LINK MN MN A 102 O HOH A 220 1555 1555 2.08 LINK MN MN A 103 O HOH A 203 1555 1555 2.10 LINK MN MN A 103 O HOH A 204 1555 1555 2.14 LINK MN MN A 103 O HOH A 206 1555 1555 2.14 LINK MN MN A 103 O HOH A 207 1555 1555 2.14 LINK MN MN A 104 O HOH A 205 1555 1555 2.16 LINK MN MN A 104 O HOH A 212 1555 1555 2.06 LINK MN MN A 104 O HOH A 213 1555 1555 2.16 LINK MN MN A 104 O HOH A 216 1555 1555 2.37 LINK MN MN A 104 O HOH A 218 1555 1555 2.11 LINK MN MN A 105 O HOH A 210 1555 1555 2.34 LINK MN MN A 105 O HOH A 217 1555 1555 2.32 LINK MN MN A 106 O HOH A 201 1555 1555 2.01 LINK MN MN A 106 O HOH A 201 1555 7556 2.01 LINK MN MN A 106 O HOH A 219 1555 1555 1.95 LINK MN MN A 106 O HOH A 219 1555 7556 1.95 LINK MN MN A 106 O HOH A 221 1555 1555 2.04 LINK MN MN A 106 O HOH A 221 1555 7556 2.04 SITE 1 AC1 8 G A 5 U A 6 C A 7 G A 11 SITE 2 AC1 8 C A 15 C A 16 A A 29 C A 30 SITE 1 AC2 6 G A 8 HOH A 202 HOH A 208 HOH A 209 SITE 2 AC2 6 HOH A 211 HOH A 220 SITE 1 AC3 6 A A 32 G A 33 HOH A 203 HOH A 204 SITE 2 AC3 6 HOH A 206 HOH A 207 SITE 1 AC4 6 G A 4 HOH A 205 HOH A 212 HOH A 213 SITE 2 AC4 6 HOH A 216 HOH A 218 SITE 1 AC5 3 A A 23 HOH A 210 HOH A 217 SITE 1 AC6 3 HOH A 201 HOH A 219 HOH A 221 SITE 1 AC7 2 A A 32 G A 33 CRYST1 112.309 112.309 59.385 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008904 0.005141 0.000000 0.00000 SCALE2 0.000000 0.010281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016839 0.00000