HEADER METAL BINDING PROTEIN 19-FEB-20 6VWE TITLE CRYSTAL STRUCTURE OF THE D100R MULTIDRUG BINDING TRANSCRIPTIONAL TITLE 2 REGULATOR LMRR IN COMPLEX WITH RHODIUM BIS-DIPHOSPHINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS (STRAIN SOURCE 3 MG1363); SOURCE 4 ORGANISM_TAXID: 416870; SOURCE 5 STRAIN: MG1363; SOURCE 6 GENE: LLMG_0323; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MULTIDRUG BINDING TRANSCRIPTIONAL REGULATOR, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ZADVORNYY,J.A.LAUREANTI,J.W.PETERS REVDAT 4 25-OCT-23 6VWE 1 REMARK REVDAT 3 04-OCT-23 6VWE 1 REMARK REVDAT 2 08-FEB-23 6VWE 1 SPRSDE REVDAT 1 01-APR-20 6VWE 0 JRNL AUTH J.A.LAUREANTI,B.GINOVSKA,G.W.BUCHKO,G.K.SCHENTER, JRNL AUTH 2 O.A.ZADVORNYY,M.HEBERTA,J.W.PETERS,W.J.SHAW JRNL TITL A POSITIVE CHARGE IN THE OUTER COORDINATION SPHERE OF AN JRNL TITL 2 ARTIFICIAL ENZYME INCREASES CO2 HYDROGENATION JRNL REF ORGANOMETALLICS 2020 JRNL REFN ISSN 0276-7333 JRNL DOI 10.1021/ACS.ORGANOMET.9B00843 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3758: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 8935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6300 - 3.6100 0.98 2881 144 0.1747 0.2518 REMARK 3 2 3.6000 - 2.8600 0.98 2784 178 0.2909 0.3216 REMARK 3 3 2.8600 - 2.5000 0.98 2806 142 0.3253 0.4490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1786 REMARK 3 ANGLE : 1.252 2403 REMARK 3 CHIRALITY : 0.056 250 REMARK 3 PLANARITY : 0.006 301 REMARK 3 DIHEDRAL : 23.049 696 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9196 2.5490 5.4518 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.8063 REMARK 3 T33: 0.6464 T12: -0.0520 REMARK 3 T13: -0.0242 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 5.2047 L22: 6.9142 REMARK 3 L33: 8.1005 L12: 0.1915 REMARK 3 L13: -3.2863 L23: -0.4707 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: 0.1668 S13: 0.1317 REMARK 3 S21: -0.0938 S22: -0.2743 S23: 0.6306 REMARK 3 S31: -0.6009 S32: -1.4896 S33: 0.3682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8520 7.3310 6.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.5285 REMARK 3 T33: 0.8542 T12: -0.0901 REMARK 3 T13: -0.0254 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 4.6659 L22: 4.7371 REMARK 3 L33: 6.8358 L12: -4.2999 REMARK 3 L13: 0.0345 L23: -1.4881 REMARK 3 S TENSOR REMARK 3 S11: -0.7050 S12: -0.3757 S13: 2.0152 REMARK 3 S21: 0.8020 S22: 0.1457 S23: -1.3539 REMARK 3 S31: -0.5431 S32: -0.4866 S33: 0.2756 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5173 -1.3616 -2.3925 REMARK 3 T TENSOR REMARK 3 T11: 0.5223 T22: 0.5905 REMARK 3 T33: 0.7018 T12: -0.0559 REMARK 3 T13: 0.0706 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 5.0346 L22: 9.8014 REMARK 3 L33: 2.0546 L12: -1.5911 REMARK 3 L13: -2.2706 L23: 0.3556 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.6076 S13: -0.1797 REMARK 3 S21: -0.8023 S22: 0.0872 S23: -1.0102 REMARK 3 S31: 0.2735 S32: -0.5889 S33: 0.3963 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2003 -9.7478 24.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.8169 T22: 0.5714 REMARK 3 T33: 0.8024 T12: -0.0374 REMARK 3 T13: 0.1420 T23: -0.0884 REMARK 3 L TENSOR REMARK 3 L11: 8.6378 L22: 1.1722 REMARK 3 L33: 2.8508 L12: 2.1003 REMARK 3 L13: -2.8528 L23: -1.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.9613 S13: -0.4152 REMARK 3 S21: -0.0056 S22: -0.5484 S23: 0.1795 REMARK 3 S31: 0.5552 S32: 0.1820 S33: 0.7079 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1283 -0.7989 29.7769 REMARK 3 T TENSOR REMARK 3 T11: 1.0397 T22: 0.7541 REMARK 3 T33: 0.6699 T12: -0.1917 REMARK 3 T13: -0.0154 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 4.9225 L22: 4.7247 REMARK 3 L33: 7.5938 L12: -4.9502 REMARK 3 L13: -2.4707 L23: 3.8942 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: 0.4619 S13: 0.7844 REMARK 3 S21: 0.1288 S22: -0.3301 S23: -0.1339 REMARK 3 S31: -0.1163 S32: -0.5466 S33: 0.2317 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8807 -5.0554 42.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.9519 T22: 1.1187 REMARK 3 T33: 0.6976 T12: -0.0423 REMARK 3 T13: 0.1187 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 9.1144 L22: 6.0935 REMARK 3 L33: 4.3657 L12: -2.5392 REMARK 3 L13: -0.9751 L23: 5.2363 REMARK 3 S TENSOR REMARK 3 S11: -0.5347 S12: -0.5525 S13: -0.1936 REMARK 3 S21: 1.9658 S22: 0.2770 S23: 0.0640 REMARK 3 S31: 1.6334 S32: -1.4549 S33: 0.0370 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3156 9.0775 39.2537 REMARK 3 T TENSOR REMARK 3 T11: 1.3490 T22: 1.1701 REMARK 3 T33: 0.9108 T12: 0.2575 REMARK 3 T13: -0.0538 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 7.1192 L22: 5.7561 REMARK 3 L33: 5.9844 L12: -6.4268 REMARK 3 L13: 6.5414 L23: -5.8499 REMARK 3 S TENSOR REMARK 3 S11: -0.2209 S12: 0.9942 S13: 1.0204 REMARK 3 S21: 0.5093 S22: 0.0771 S23: -1.0437 REMARK 3 S31: -1.0242 S32: -1.8164 S33: 1.3964 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7791 9.6826 44.4645 REMARK 3 T TENSOR REMARK 3 T11: 1.1890 T22: 1.7541 REMARK 3 T33: 0.9439 T12: 0.4704 REMARK 3 T13: 0.1195 T23: -0.4929 REMARK 3 L TENSOR REMARK 3 L11: 4.7146 L22: 4.9727 REMARK 3 L33: 6.0124 L12: 1.1258 REMARK 3 L13: -2.9557 L23: -0.8024 REMARK 3 S TENSOR REMARK 3 S11: -0.4619 S12: -0.4908 S13: -0.7071 REMARK 3 S21: 0.0368 S22: 0.5641 S23: 0.7997 REMARK 3 S31: -0.9817 S32: -2.3059 S33: 0.2593 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3549 0.5192 16.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.8128 T22: 1.3480 REMARK 3 T33: 0.8715 T12: -0.2286 REMARK 3 T13: 0.0094 T23: -0.1392 REMARK 3 L TENSOR REMARK 3 L11: 6.0905 L22: 6.2996 REMARK 3 L33: 4.9324 L12: -6.1216 REMARK 3 L13: -5.4385 L23: 5.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.7925 S12: -0.6027 S13: -0.5438 REMARK 3 S21: 0.8291 S22: 0.0703 S23: 1.0288 REMARK 3 S31: 1.0428 S32: -0.4885 S33: 0.7749 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6DO0 REMARK 200 REMARK 200 REMARK: RODS AND PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM FLUORIDE; 18% PEG REMARK 280 3350;, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.80950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.80950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 70 REMARK 465 SER A 71 REMARK 465 LYS A 110 REMARK 465 LYS A 111 REMARK 465 SER A 112 REMARK 465 GLU A 113 REMARK 465 ALA A 114 REMARK 465 ILE A 115 REMARK 465 LYS A 116 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 GLU B 70 REMARK 465 SER B 71 REMARK 465 GLN B 72 REMARK 465 GLY B 73 REMARK 465 GLY B 74 REMARK 465 LYS B 110 REMARK 465 LYS B 111 REMARK 465 SER B 112 REMARK 465 GLU B 113 REMARK 465 ALA B 114 REMARK 465 ILE B 115 REMARK 465 LYS B 116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 108 -151.16 -98.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JY1 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DO0 RELATED DB: PDB REMARK 900 D100R SUBSTITUTION DBREF 6VWE A 2 116 UNP A2RI36 A2RI36_LACLM 2 116 DBREF 6VWE B 2 116 UNP A2RI36 A2RI36_LACLM 2 116 SEQADV 6VWE GLY A -2 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE SER A -1 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE MET A 0 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE GLY A 1 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE ASP A 55 UNP A2RI36 LYS 55 ENGINEERED MUTATION SEQADV 6VWE GLN A 59 UNP A2RI36 LYS 59 ENGINEERED MUTATION SEQADV 6VWE CYS A 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 6VWE ARG A 100 UNP A2RI36 ASP 100 ENGINEERED MUTATION SEQADV 6VWE GLY B -2 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE SER B -1 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE MET B 0 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE GLY B 1 UNP A2RI36 EXPRESSION TAG SEQADV 6VWE ASP B 55 UNP A2RI36 LYS 55 ENGINEERED MUTATION SEQADV 6VWE GLN B 59 UNP A2RI36 LYS 59 ENGINEERED MUTATION SEQADV 6VWE CYS B 89 UNP A2RI36 MET 89 ENGINEERED MUTATION SEQADV 6VWE ARG B 100 UNP A2RI36 ASP 100 ENGINEERED MUTATION SEQRES 1 A 119 GLY SER MET GLY ALA GLU ILE PRO LYS GLU MET LEU ARG SEQRES 2 A 119 ALA GLN THR ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN SEQRES 3 A 119 GLY ASP ASN TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS SEQRES 4 A 119 GLU ALA SER ASN GLY GLU MET GLU LEU ASN GLU ALA THR SEQRES 5 A 119 LEU TYR THR ILE PHE ASP ARG LEU GLU GLN ASP GLY ILE SEQRES 6 A 119 ILE SER SER TYR TRP GLY ASP GLU SER GLN GLY GLY ARG SEQRES 7 A 119 ARG LYS TYR TYR ARG LEU THR GLU ILE GLY HIS GLU ASN SEQRES 8 A 119 CYS ARG LEU ALA PHE GLU SER TRP SER ARG VAL ARG LYS SEQRES 9 A 119 ILE ILE GLU ASN LEU GLU ALA ASN LYS LYS SER GLU ALA SEQRES 10 A 119 ILE LYS SEQRES 1 B 119 GLY SER MET GLY ALA GLU ILE PRO LYS GLU MET LEU ARG SEQRES 2 B 119 ALA GLN THR ASN VAL ILE LEU LEU ASN VAL LEU LYS GLN SEQRES 3 B 119 GLY ASP ASN TYR VAL TYR GLY ILE ILE LYS GLN VAL LYS SEQRES 4 B 119 GLU ALA SER ASN GLY GLU MET GLU LEU ASN GLU ALA THR SEQRES 5 B 119 LEU TYR THR ILE PHE ASP ARG LEU GLU GLN ASP GLY ILE SEQRES 6 B 119 ILE SER SER TYR TRP GLY ASP GLU SER GLN GLY GLY ARG SEQRES 7 B 119 ARG LYS TYR TYR ARG LEU THR GLU ILE GLY HIS GLU ASN SEQRES 8 B 119 CYS ARG LEU ALA PHE GLU SER TRP SER ARG VAL ARG LYS SEQRES 9 B 119 ILE ILE GLU ASN LEU GLU ALA ASN LYS LYS SER GLU ALA SEQRES 10 B 119 ILE LYS HET JY1 A 201 53 HETNAM JY1 BIS[DIETHYL(METHYL)-LAMBDA~5~-PHOSPHANYL]{BIS[{[(2-{[2- HETNAM 2 JY1 (2,5-DIOXOPYRROLIDIN-1-YL)ETHYL]AMINO}-2-OXOETHYL) HETNAM 3 JY1 AMINO]METHYL}(DIETHYL)-LAMBDA~5~-PHOSPHANYL]}RHODIUM FORMUL 3 JY1 C36 H74 N6 O6 P4 RH FORMUL 4 HOH *(H2 O) HELIX 1 AA1 PRO A 5 GLY A 24 1 20 HELIX 2 AA2 TYR A 27 SER A 39 1 13 HELIX 3 AA3 ASN A 46 ASP A 60 1 15 HELIX 4 AA4 THR A 82 ASN A 109 1 28 HELIX 5 AA5 PRO B 5 GLY B 24 1 20 HELIX 6 AA6 TYR B 27 SER B 39 1 13 HELIX 7 AA7 ASN B 46 GLN B 59 1 14 HELIX 8 AA8 THR B 82 GLU B 107 1 26 SHEET 1 AA1 2 ILE A 63 TRP A 67 0 SHEET 2 AA1 2 LYS A 77 LEU A 81 -1 O TYR A 78 N TYR A 66 SHEET 1 AA2 2 ILE B 63 GLY B 68 0 SHEET 2 AA2 2 ARG B 76 LEU B 81 -1 O ARG B 76 N GLY B 68 LINK SG CYS A 89 C25 JY1 A 201 1555 1555 1.77 CISPEP 1 GLY A 74 ARG A 75 0 0.55 SITE 1 AC1 11 VAL A 15 ASN A 19 LYS A 22 CYS A 89 SITE 2 AC1 11 TRP A 96 SER A 97 LEU B 18 CYS B 89 SITE 3 AC1 11 ALA B 92 TRP B 96 ARG B 100 CRYST1 101.855 35.619 71.651 90.00 95.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009818 0.000000 0.001019 0.00000 SCALE2 0.000000 0.028075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014031 0.00000