HEADER OXIDOREDUCTASE 19-FEB-20 6VWF TITLE STRUCTURE OF ALDH9A1 COMPLEXED WITH NAD+ IN SPACE GROUP C222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-TRIMETHYLAMINOBUTYRALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TMABALDH,ALDEHYDE DEHYDROGENASE E3 ISOZYME,ALDEHYDE COMPND 5 DEHYDROGENASE FAMILY 9 MEMBER A1,GAMMA-AMINOBUTYRALDEHYDE COMPND 6 DEHYDROGENASE,R-AMINOBUTYRALDEHYDE DEHYDROGENASE; COMPND 7 EC: 1.2.1.47,1.2.1.3,1.2.1.19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH9A1, ALDH4, ALDH7, ALDH9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, ALDEHYDE DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.WYATT,J.J.TANNER REVDAT 3 11-OCT-23 6VWF 1 REMARK REVDAT 2 26-AUG-20 6VWF 1 JRNL REVDAT 1 05-AUG-20 6VWF 0 JRNL AUTH J.W.WYATT,D.A.KORASICK,I.A.QURESHI,A.C.CAMPBELL,K.S.GATES, JRNL AUTH 2 J.J.TANNER JRNL TITL INHIBITION, CRYSTAL STRUCTURES, AND IN-SOLUTION OLIGOMERIC JRNL TITL 2 STRUCTURE OF ALDEHYDE DEHYDROGENASE 9A1. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 691 08477 2020 JRNL REFN ESSN 1096-0384 JRNL PMID 32717224 JRNL DOI 10.1016/J.ABB.2020.108477 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1300 - 5.8679 0.99 2957 157 0.2052 0.2354 REMARK 3 2 5.8679 - 4.6589 1.00 2849 143 0.1958 0.2247 REMARK 3 3 4.6589 - 4.0704 1.00 2796 165 0.1769 0.2237 REMARK 3 4 4.0704 - 3.6984 1.00 2807 151 0.1988 0.2756 REMARK 3 5 3.6984 - 3.4334 1.00 2826 112 0.2195 0.2984 REMARK 3 6 3.4334 - 3.2310 1.00 2775 147 0.2243 0.3255 REMARK 3 7 3.2310 - 3.0692 1.00 2774 150 0.2655 0.3230 REMARK 3 8 3.0692 - 2.9356 1.00 2776 156 0.2531 0.3137 REMARK 3 9 2.9356 - 2.8226 1.00 2785 120 0.2646 0.3296 REMARK 3 10 2.8226 - 2.7252 1.00 2786 135 0.2804 0.3248 REMARK 3 11 2.7252 - 2.6400 1.00 2741 159 0.2880 0.3323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A') REMARK 3 ORIGIN FOR THE GROUP (A): -43.8974 -21.1605 -27.3585 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.3819 REMARK 3 T33: 0.3061 T12: 0.0669 REMARK 3 T13: 0.0368 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.3934 L22: 1.3147 REMARK 3 L33: 1.0029 L12: -0.4627 REMARK 3 L13: -0.3327 L23: -0.3541 REMARK 3 S TENSOR REMARK 3 S11: 0.2403 S12: 0.0137 S13: 0.3255 REMARK 3 S21: -0.0945 S22: -0.1436 S23: -0.2154 REMARK 3 S31: -0.1020 S32: 0.2322 S33: -0.1020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B') REMARK 3 ORIGIN FOR THE GROUP (A): -59.6722 -38.8185 -66.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.3992 REMARK 3 T33: 0.2492 T12: 0.0789 REMARK 3 T13: -0.0150 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.0487 L22: 0.5903 REMARK 3 L33: 0.7446 L12: -0.1965 REMARK 3 L13: 0.0939 L23: -0.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.2154 S13: -0.2740 REMARK 3 S21: 0.0230 S22: 0.0399 S23: -0.0144 REMARK 3 S31: 0.1587 S32: 0.0644 S33: -0.0881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 62 OR REMARK 3 (RESID 63 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 64 REMARK 3 THROUGH 85 OR (RESID 86 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 87 THROUGH 132 OR (RESID 133 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 136 THROUGH 142 OR REMARK 3 (RESID 143 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 144 REMARK 3 THROUGH 315 OR (RESID 316 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 317 THROUGH 343 OR (RESID 344 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 345 THROUGH 388 REMARK 3 OR (RESID 389 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 390 THROUGH 412 OR (RESID 413 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 414 THROUGH 425 OR (RESID 426 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 427 THROUGH 436 REMARK 3 OR (RESID 437 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 438 THROUGH 494 OR RESID 581)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 66 OR REMARK 3 (RESID 67 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 68 REMARK 3 THROUGH 262 OR (RESID 263 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 264 THROUGH 298 OR (RESID 299 REMARK 3 THROUGH 301 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 302 THROUGH 306 OR (RESID 307 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 308 THROUGH 312 OR (RESID 313 REMARK 3 THROUGH 314 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 315 THROUGH 346 OR (RESID 347 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 348 THROUGH 351 OR (RESID 352 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 353 THROUGH 362 REMARK 3 OR (RESID 363 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 364 THROUGH 399 OR (RESID 400 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 401 THROUGH 414 OR (RESID 415 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 416 THROUGH 494 REMARK 3 OR RESID 581)) REMARK 3 ATOM PAIRS NUMBER : 4007 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000247139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 47.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1A4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SUCCINIC ACID PH 7.0, 15% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 79.07400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.73300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 79.07400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.73300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 79.07400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.73300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 79.07400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.73300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.07400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 81.73300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 134 REMARK 465 PRO A 135 REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 465 VAL A 234 REMARK 465 PRO A 235 REMARK 465 THR A 236 REMARK 465 GLY A 237 REMARK 465 MET A 238 REMARK 465 LYS A 239 REMARK 465 ILE A 240 REMARK 465 MET A 241 REMARK 465 GLU A 242 REMARK 465 MET A 243 REMARK 465 SER A 244 REMARK 465 ALA A 245 REMARK 465 LYS A 246 REMARK 465 GLY A 247 REMARK 465 ILE A 248 REMARK 465 LYS A 249 REMARK 465 PRO A 250 REMARK 465 VAL A 251 REMARK 465 THR A 252 REMARK 465 LEU A 253 REMARK 465 GLU A 254 REMARK 465 LEU A 255 REMARK 465 GLY A 256 REMARK 465 GLY A 257 REMARK 465 ASN A 449 REMARK 465 VAL A 450 REMARK 465 SER A 451 REMARK 465 PRO A 452 REMARK 465 VAL A 453 REMARK 465 GLU A 454 REMARK 465 LEU A 455 REMARK 465 PRO A 456 REMARK 465 PHE A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 TYR A 460 REMARK 465 LYS A 461 REMARK 465 LYS A 462 REMARK 465 SER A 463 REMARK 465 GLY A 464 REMARK 465 LEU B 134 REMARK 465 PRO B 135 REMARK 465 GLY B 232 REMARK 465 SER B 233 REMARK 465 VAL B 234 REMARK 465 PRO B 235 REMARK 465 THR B 236 REMARK 465 GLY B 237 REMARK 465 MET B 238 REMARK 465 LYS B 239 REMARK 465 ILE B 240 REMARK 465 MET B 241 REMARK 465 GLU B 242 REMARK 465 MET B 243 REMARK 465 SER B 244 REMARK 465 ALA B 245 REMARK 465 LYS B 246 REMARK 465 GLY B 247 REMARK 465 ILE B 248 REMARK 465 LYS B 249 REMARK 465 PRO B 250 REMARK 465 VAL B 251 REMARK 465 THR B 252 REMARK 465 LEU B 253 REMARK 465 GLU B 254 REMARK 465 LEU B 255 REMARK 465 GLY B 256 REMARK 465 GLY B 257 REMARK 465 ASN B 449 REMARK 465 VAL B 450 REMARK 465 SER B 451 REMARK 465 PRO B 452 REMARK 465 VAL B 453 REMARK 465 GLU B 454 REMARK 465 LEU B 455 REMARK 465 PRO B 456 REMARK 465 PHE B 457 REMARK 465 GLY B 458 REMARK 465 GLY B 459 REMARK 465 TYR B 460 REMARK 465 LYS B 461 REMARK 465 LYS B 462 REMARK 465 SER B 463 REMARK 465 GLY B 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 ILE A 263 CG1 CG2 CD1 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 THR A 379 OG1 CG2 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 ASP A 403 CG OD1 OD2 REMARK 470 GLU A 410 CG CD OE1 OE2 REMARK 470 THR A 415 OG1 CG2 REMARK 470 ILE A 428 CG1 CG2 CD1 REMARK 470 GLN A 429 CG CD OE1 NE2 REMARK 470 MET A 487 CG SD CE REMARK 470 GLU A 491 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ILE B 132 CG1 CG2 CD1 REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 ARG B 314 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 THR B 379 OG1 CG2 REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 ASP B 403 CG OD1 OD2 REMARK 470 GLU B 410 CG CD OE1 OE2 REMARK 470 ASN B 413 CG OD1 ND2 REMARK 470 ARG B 426 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 428 CG1 CG2 CD1 REMARK 470 GLN B 429 CG CD OE1 NE2 REMARK 470 GLU B 437 CG CD OE1 OE2 REMARK 470 MET B 487 CG SD CE REMARK 470 GLU B 491 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 266 OG1 THR B 425 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 58.17 -93.99 REMARK 500 ASN A 447 -174.93 -172.53 REMARK 500 GLN B 286 56.82 -93.55 REMARK 500 ASN B 447 -174.57 -172.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 501 REMARK 610 NAD B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 DBREF 6VWF A 1 494 UNP P49189 AL9A1_HUMAN 1 494 DBREF 6VWF B 1 494 UNP P49189 AL9A1_HUMAN 1 494 SEQRES 1 A 494 MET SER THR GLY THR PHE VAL VAL SER GLN PRO LEU ASN SEQRES 2 A 494 TYR ARG GLY GLY ALA ARG VAL GLU PRO ALA ASP ALA SER SEQRES 3 A 494 GLY THR GLU LYS ALA PHE GLU PRO ALA THR GLY ARG VAL SEQRES 4 A 494 ILE ALA THR PHE THR CYS SER GLY GLU LYS GLU VAL ASN SEQRES 5 A 494 LEU ALA VAL GLN ASN ALA LYS ALA ALA PHE LYS ILE TRP SEQRES 6 A 494 SER GLN LYS SER GLY MET GLU ARG CYS ARG ILE LEU LEU SEQRES 7 A 494 GLU ALA ALA ARG ILE ILE ARG GLU ARG GLU ASP GLU ILE SEQRES 8 A 494 ALA THR MET GLU CYS ILE ASN ASN GLY LYS SER ILE PHE SEQRES 9 A 494 GLU ALA ARG LEU ASP ILE ASP ILE SER TRP GLN CYS LEU SEQRES 10 A 494 GLU TYR TYR ALA GLY LEU ALA ALA SER MET ALA GLY GLU SEQRES 11 A 494 HIS ILE GLN LEU PRO GLY GLY SER PHE GLY TYR THR ARG SEQRES 12 A 494 ARG GLU PRO LEU GLY VAL CYS VAL GLY ILE GLY ALA TRP SEQRES 13 A 494 ASN TYR PRO PHE GLN ILE ALA SER TRP LYS SER ALA PRO SEQRES 14 A 494 ALA LEU ALA CYS GLY ASN ALA MET VAL PHE LYS PRO SER SEQRES 15 A 494 PRO PHE THR PRO VAL SER ALA LEU LEU LEU ALA GLU ILE SEQRES 16 A 494 TYR SER GLU ALA GLY VAL PRO PRO GLY LEU PHE ASN VAL SEQRES 17 A 494 VAL GLN GLY GLY ALA ALA THR GLY GLN PHE LEU CYS GLN SEQRES 18 A 494 HIS PRO ASP VAL ALA LYS VAL SER PHE THR GLY SER VAL SEQRES 19 A 494 PRO THR GLY MET LYS ILE MET GLU MET SER ALA LYS GLY SEQRES 20 A 494 ILE LYS PRO VAL THR LEU GLU LEU GLY GLY LYS SER PRO SEQRES 21 A 494 LEU ILE ILE PHE SER ASP CYS ASP MET ASN ASN ALA VAL SEQRES 22 A 494 LYS GLY ALA LEU MET ALA ASN PHE LEU THR GLN GLY GLN SEQRES 23 A 494 VAL CYS CYS ASN GLY THR ARG VAL PHE VAL GLN LYS GLU SEQRES 24 A 494 ILE LEU ASP LYS PHE THR GLU GLU VAL VAL LYS GLN THR SEQRES 25 A 494 GLN ARG ILE LYS ILE GLY ASP PRO LEU LEU GLU ASP THR SEQRES 26 A 494 ARG MET GLY PRO LEU ILE ASN ARG PRO HIS LEU GLU ARG SEQRES 27 A 494 VAL LEU GLY PHE VAL LYS VAL ALA LYS GLU GLN GLY ALA SEQRES 28 A 494 LYS VAL LEU CYS GLY GLY ASP ILE TYR VAL PRO GLU ASP SEQRES 29 A 494 PRO LYS LEU LYS ASP GLY TYR TYR MET ARG PRO CYS VAL SEQRES 30 A 494 LEU THR ASN CYS ARG ASP ASP MET THR CYS VAL LYS GLU SEQRES 31 A 494 GLU ILE PHE GLY PRO VAL MET SER ILE LEU SER PHE ASP SEQRES 32 A 494 THR GLU ALA GLU VAL LEU GLU ARG ALA ASN ASP THR THR SEQRES 33 A 494 PHE GLY LEU ALA ALA GLY VAL PHE THR ARG ASP ILE GLN SEQRES 34 A 494 ARG ALA HIS ARG VAL VAL ALA GLU LEU GLN ALA GLY THR SEQRES 35 A 494 CYS PHE ILE ASN ASN TYR ASN VAL SER PRO VAL GLU LEU SEQRES 36 A 494 PRO PHE GLY GLY TYR LYS LYS SER GLY PHE GLY ARG GLU SEQRES 37 A 494 ASN GLY ARG VAL THR ILE GLU TYR TYR SER GLN LEU LYS SEQRES 38 A 494 THR VAL CYS VAL GLU MET GLY ASP VAL GLU SER ALA PHE SEQRES 1 B 494 MET SER THR GLY THR PHE VAL VAL SER GLN PRO LEU ASN SEQRES 2 B 494 TYR ARG GLY GLY ALA ARG VAL GLU PRO ALA ASP ALA SER SEQRES 3 B 494 GLY THR GLU LYS ALA PHE GLU PRO ALA THR GLY ARG VAL SEQRES 4 B 494 ILE ALA THR PHE THR CYS SER GLY GLU LYS GLU VAL ASN SEQRES 5 B 494 LEU ALA VAL GLN ASN ALA LYS ALA ALA PHE LYS ILE TRP SEQRES 6 B 494 SER GLN LYS SER GLY MET GLU ARG CYS ARG ILE LEU LEU SEQRES 7 B 494 GLU ALA ALA ARG ILE ILE ARG GLU ARG GLU ASP GLU ILE SEQRES 8 B 494 ALA THR MET GLU CYS ILE ASN ASN GLY LYS SER ILE PHE SEQRES 9 B 494 GLU ALA ARG LEU ASP ILE ASP ILE SER TRP GLN CYS LEU SEQRES 10 B 494 GLU TYR TYR ALA GLY LEU ALA ALA SER MET ALA GLY GLU SEQRES 11 B 494 HIS ILE GLN LEU PRO GLY GLY SER PHE GLY TYR THR ARG SEQRES 12 B 494 ARG GLU PRO LEU GLY VAL CYS VAL GLY ILE GLY ALA TRP SEQRES 13 B 494 ASN TYR PRO PHE GLN ILE ALA SER TRP LYS SER ALA PRO SEQRES 14 B 494 ALA LEU ALA CYS GLY ASN ALA MET VAL PHE LYS PRO SER SEQRES 15 B 494 PRO PHE THR PRO VAL SER ALA LEU LEU LEU ALA GLU ILE SEQRES 16 B 494 TYR SER GLU ALA GLY VAL PRO PRO GLY LEU PHE ASN VAL SEQRES 17 B 494 VAL GLN GLY GLY ALA ALA THR GLY GLN PHE LEU CYS GLN SEQRES 18 B 494 HIS PRO ASP VAL ALA LYS VAL SER PHE THR GLY SER VAL SEQRES 19 B 494 PRO THR GLY MET LYS ILE MET GLU MET SER ALA LYS GLY SEQRES 20 B 494 ILE LYS PRO VAL THR LEU GLU LEU GLY GLY LYS SER PRO SEQRES 21 B 494 LEU ILE ILE PHE SER ASP CYS ASP MET ASN ASN ALA VAL SEQRES 22 B 494 LYS GLY ALA LEU MET ALA ASN PHE LEU THR GLN GLY GLN SEQRES 23 B 494 VAL CYS CYS ASN GLY THR ARG VAL PHE VAL GLN LYS GLU SEQRES 24 B 494 ILE LEU ASP LYS PHE THR GLU GLU VAL VAL LYS GLN THR SEQRES 25 B 494 GLN ARG ILE LYS ILE GLY ASP PRO LEU LEU GLU ASP THR SEQRES 26 B 494 ARG MET GLY PRO LEU ILE ASN ARG PRO HIS LEU GLU ARG SEQRES 27 B 494 VAL LEU GLY PHE VAL LYS VAL ALA LYS GLU GLN GLY ALA SEQRES 28 B 494 LYS VAL LEU CYS GLY GLY ASP ILE TYR VAL PRO GLU ASP SEQRES 29 B 494 PRO LYS LEU LYS ASP GLY TYR TYR MET ARG PRO CYS VAL SEQRES 30 B 494 LEU THR ASN CYS ARG ASP ASP MET THR CYS VAL LYS GLU SEQRES 31 B 494 GLU ILE PHE GLY PRO VAL MET SER ILE LEU SER PHE ASP SEQRES 32 B 494 THR GLU ALA GLU VAL LEU GLU ARG ALA ASN ASP THR THR SEQRES 33 B 494 PHE GLY LEU ALA ALA GLY VAL PHE THR ARG ASP ILE GLN SEQRES 34 B 494 ARG ALA HIS ARG VAL VAL ALA GLU LEU GLN ALA GLY THR SEQRES 35 B 494 CYS PHE ILE ASN ASN TYR ASN VAL SER PRO VAL GLU LEU SEQRES 36 B 494 PRO PHE GLY GLY TYR LYS LYS SER GLY PHE GLY ARG GLU SEQRES 37 B 494 ASN GLY ARG VAL THR ILE GLU TYR TYR SER GLN LEU LYS SEQRES 38 B 494 THR VAL CYS VAL GLU MET GLY ASP VAL GLU SER ALA PHE HET NAD A 501 23 HET NAD B 501 23 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *31(H2 O) HELIX 1 AA1 GLY A 47 LYS A 68 1 22 HELIX 2 AA2 SER A 69 ARG A 87 1 19 HELIX 3 AA3 ARG A 87 GLY A 100 1 14 HELIX 4 AA4 SER A 102 SER A 126 1 25 HELIX 5 AA5 TYR A 158 CYS A 173 1 16 HELIX 6 AA6 VAL A 187 GLY A 200 1 14 HELIX 7 AA7 GLY A 212 HIS A 222 1 11 HELIX 8 AA8 ASP A 268 ALA A 279 1 12 HELIX 9 AA9 ASN A 280 GLN A 286 5 7 HELIX 10 AB1 LEU A 301 GLN A 313 1 13 HELIX 11 AB2 ASN A 332 GLN A 349 1 18 HELIX 12 AB3 ASP A 364 LYS A 368 5 5 HELIX 13 AB4 MET A 385 GLU A 390 1 6 HELIX 14 AB5 THR A 404 ALA A 412 1 9 HELIX 15 AB6 ASP A 427 LEU A 438 1 12 HELIX 16 AB7 ARG A 467 TYR A 477 1 11 HELIX 17 AB8 GLY B 47 LYS B 68 1 22 HELIX 18 AB9 SER B 69 ARG B 87 1 19 HELIX 19 AC1 ARG B 87 GLY B 100 1 14 HELIX 20 AC2 SER B 102 SER B 126 1 25 HELIX 21 AC3 TYR B 158 CYS B 173 1 16 HELIX 22 AC4 VAL B 187 GLY B 200 1 14 HELIX 23 AC5 GLY B 212 HIS B 222 1 11 HELIX 24 AC6 ASP B 268 ALA B 279 1 12 HELIX 25 AC7 ASN B 280 GLN B 286 5 7 HELIX 26 AC8 LEU B 301 GLN B 313 1 13 HELIX 27 AC9 ASN B 332 GLN B 349 1 18 HELIX 28 AD1 ASP B 364 LYS B 368 5 5 HELIX 29 AD2 MET B 385 GLU B 390 1 6 HELIX 30 AD3 THR B 404 ALA B 412 1 9 HELIX 31 AD4 ASP B 427 LEU B 438 1 12 HELIX 32 AD5 ARG B 467 TYR B 477 1 11 SHEET 1 AA1 2 ASN A 13 ARG A 15 0 SHEET 2 AA1 2 ALA A 18 VAL A 20 -1 O ALA A 18 N ARG A 15 SHEET 1 AA2 2 ALA A 25 PHE A 32 0 SHEET 2 AA2 2 VAL A 39 SER A 46 -1 O ALA A 41 N ALA A 31 SHEET 1 AA3 3 HIS A 131 ILE A 132 0 SHEET 2 AA3 3 PHE A 139 PRO A 146 -1 O GLY A 140 N ILE A 132 SHEET 3 AA3 3 SER A 478 VAL A 485 -1 O LYS A 481 N ARG A 143 SHEET 1 AA4 4 PHE A 206 VAL A 208 0 SHEET 2 AA4 4 ALA A 176 LYS A 180 1 N PHE A 179 O ASN A 207 SHEET 3 AA4 4 VAL A 149 ILE A 153 1 N GLY A 152 O LYS A 180 SHEET 4 AA4 4 VAL A 225 SER A 229 1 O ALA A 226 N VAL A 149 SHEET 1 AA5 7 LYS A 352 CYS A 355 0 SHEET 2 AA5 7 CYS A 376 THR A 379 -1 O THR A 379 N LYS A 352 SHEET 3 AA5 7 VAL A 396 PHE A 402 1 O MET A 397 N CYS A 376 SHEET 4 AA5 7 ARG A 293 GLN A 297 1 N VAL A 294 O SER A 398 SHEET 5 AA5 7 PRO A 260 ILE A 263 1 N LEU A 261 O PHE A 295 SHEET 6 AA5 7 ALA A 420 PHE A 424 1 O GLY A 422 N ILE A 262 SHEET 7 AA5 7 THR A 442 ILE A 445 1 O PHE A 444 N VAL A 423 SHEET 1 AA6 2 ASN B 13 ARG B 15 0 SHEET 2 AA6 2 ALA B 18 VAL B 20 -1 O ALA B 18 N ARG B 15 SHEET 1 AA7 2 ALA B 25 PHE B 32 0 SHEET 2 AA7 2 VAL B 39 SER B 46 -1 O ALA B 41 N ALA B 31 SHEET 1 AA8 3 HIS B 131 ILE B 132 0 SHEET 2 AA8 3 PHE B 139 PRO B 146 -1 O GLY B 140 N ILE B 132 SHEET 3 AA8 3 SER B 478 VAL B 485 -1 O GLN B 479 N GLU B 145 SHEET 1 AA9 4 PHE B 206 VAL B 208 0 SHEET 2 AA9 4 ALA B 176 LYS B 180 1 N PHE B 179 O ASN B 207 SHEET 3 AA9 4 VAL B 149 ILE B 153 1 N GLY B 152 O LYS B 180 SHEET 4 AA9 4 VAL B 225 SER B 229 1 O ALA B 226 N VAL B 149 SHEET 1 AB1 7 LYS B 352 CYS B 355 0 SHEET 2 AB1 7 CYS B 376 THR B 379 -1 O THR B 379 N LYS B 352 SHEET 3 AB1 7 VAL B 396 PHE B 402 1 O ILE B 399 N LEU B 378 SHEET 4 AB1 7 ARG B 293 GLN B 297 1 N VAL B 294 O LEU B 400 SHEET 5 AB1 7 PRO B 260 ILE B 263 1 N LEU B 261 O ARG B 293 SHEET 6 AB1 7 ALA B 420 PHE B 424 1 O GLY B 422 N ILE B 262 SHEET 7 AB1 7 THR B 442 ILE B 445 1 O PHE B 444 N VAL B 423 SITE 1 AC1 8 ILE A 153 GLY A 154 LYS A 180 PRO A 183 SITE 2 AC1 8 GLY A 212 ALA A 213 GLY A 216 GLN A 217 SITE 1 AC2 7 ILE B 153 GLY B 154 LYS B 180 SER B 182 SITE 2 AC2 7 PRO B 183 ALA B 213 GLY B 216 CRYST1 158.148 163.466 84.341 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011857 0.00000