data_6VWV # _entry.id 6VWV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VWV pdb_00006vwv 10.2210/pdb6vwv/pdb WWPDB D_1000247226 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '6VWT contains same RNA at a different stage of the phase transition' 6VWT unspecified PDB '5E54 contains same RNA without ligand, prior to phase transition' 5E54 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VWV _pdbx_database_status.recvd_initial_deposition_date 2020-02-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 0000-0002-6464-7829 'Wang, Y.-X.' 2 0000-0002-2175-0148 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 1762 _citation.page_last 1762 _citation.title 'Synchronous RNA conformational changes trigger ordered phase transitions in crystals.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-021-21838-5 _citation.pdbx_database_id_PubMed 33741910 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramakrishnan, S.' 1 ? primary 'Stagno, J.R.' 2 ? primary 'Conrad, C.E.' 3 ? primary 'Ding, J.' 4 ? primary 'Yu, P.' 5 ? primary 'Bhandari, Y.R.' 6 ? primary 'Lee, Y.T.' 7 ? primary 'Pauly, G.' 8 ? primary 'Yefanov, O.' 9 ? primary 'Wiedorn, M.O.' 10 ? primary 'Knoska, J.' 11 ? primary 'Oberthur, D.' 12 ? primary 'White, T.A.' 13 ? primary 'Barty, A.' 14 ? primary 'Mariani, V.' 15 ? primary 'Li, C.' 16 ? primary 'Brehm, W.' 17 ? primary 'Heinz, W.F.' 18 ? primary 'Magidson, V.' 19 ? primary 'Lockett, S.' 20 ? primary 'Hunter, M.S.' 21 ? primary 'Boutet, S.' 22 ? primary 'Zatsepin, N.A.' 23 ? primary 'Zuo, X.' 24 ? primary 'Grant, T.D.' 25 ? primary 'Pandey, S.' 26 ? primary 'Schmidt, M.' 27 ? primary 'Spence, J.C.H.' 28 ? primary 'Chapman, H.N.' 29 ? primary 'Wang, Y.X.' 30 ? # _cell.angle_alpha 90.010 _cell.angle_alpha_esd ? _cell.angle_beta 84.050 _cell.angle_beta_esd ? _cell.angle_gamma 68.890 _cell.angle_gamma_esd ? _cell.entry_id 6VWV _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.090 _cell.length_a_esd ? _cell.length_b 25.490 _cell.length_b_esd ? _cell.length_c 123.960 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'adenine riboswitch aptamer variant' 22687.383 2 ? variant ? ? 2 non-polymer syn ADENINE 135.127 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP009262.1 _struct_ref.pdbx_db_accession 675337566 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUC _struct_ref.pdbx_align_begin 1106592 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VWV A 1 ? 71 ? 675337566 1106592 ? 1106662 ? 13 83 2 1 6VWV B 1 ? 71 ? 675337566 1106592 ? 1106662 ? 13 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6VWV G A 1 ? GB 675337566 C 1106592 variant 13 1 1 6VWV G A 3 ? GB 675337566 C 1106594 variant 15 2 1 6VWV A A 4 ? GB 675337566 U 1106595 variant 16 3 1 6VWV A A 5 ? GB 675337566 U 1106596 variant 17 4 1 6VWV G A 6 ? GB 675337566 C 1106597 variant 18 5 1 6VWV C A 66 ? GB 675337566 G 1106657 variant 78 6 1 6VWV U A 67 ? GB 675337566 A 1106658 variant 79 7 1 6VWV U A 68 ? GB 675337566 A 1106659 variant 80 8 1 6VWV C A 69 ? GB 675337566 G 1106660 variant 81 9 1 6VWV C A 70 ? GB 675337566 U 1106661 variant 82 10 2 6VWV G B 1 ? GB 675337566 C 1106592 variant 13 11 2 6VWV G B 3 ? GB 675337566 C 1106594 variant 15 12 2 6VWV A B 4 ? GB 675337566 U 1106595 variant 16 13 2 6VWV A B 5 ? GB 675337566 U 1106596 variant 17 14 2 6VWV G B 6 ? GB 675337566 C 1106597 variant 18 15 2 6VWV C B 66 ? GB 675337566 G 1106657 variant 78 16 2 6VWV U B 67 ? GB 675337566 A 1106658 variant 79 17 2 6VWV U B 68 ? GB 675337566 A 1106659 variant 80 18 2 6VWV C B 69 ? GB 675337566 G 1106660 variant 81 19 2 6VWV C B 70 ? GB 675337566 U 1106661 variant 82 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VWV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, pH 6.5, 80 mM potassium chloride, 100 mM magnesium chloride, 12 mM spermine tetrahydrochloride, 65% v/v (+/-)-2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment Y # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'CS-PAD CXI-1' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-18 _diffrn_detector.pdbx_frequency 120 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.34 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'FREE ELECTRON LASER' _diffrn_source.target ? _diffrn_source.type 'SLAC LCLS BEAMLINE CXI' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.34 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline CXI _diffrn_source.pdbx_synchrotron_site 'SLAC LCLS' # _reflns.B_iso_Wilson_estimate 75.2 _reflns.entry_id 6VWV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.00 _reflns.d_resolution_low 27.53 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7980 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 118.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.46 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.9713 _reflns.pdbx_CC_star 0.9927 _reflns.pdbx_R_split 0.2343 # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.11 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.57 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 812 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 74.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.4462 _reflns_shell.pdbx_CC_star 0.7855 _reflns_shell.pdbx_R_split 1.6994 # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 186.910 _refine.B_iso_mean 75.0512 _refine.B_iso_min 35.930 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VWV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 27.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7952 _refine.ls_number_reflns_R_free 385 _refine.ls_number_reflns_R_work 7567 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_percent_reflns_R_free 4.8400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2475 _refine.ls_R_factor_R_free 0.2793 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2460 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.960 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4tzx _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.0100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 27.0000 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 3031 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 142 _refine_hist.pdbx_B_iso_mean_ligand 63.23 _refine_hist.pdbx_B_iso_mean_solvent 63.83 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3006 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? 0.027 ? ? 1 POSITIONAL ? A 1503 ? ? 1 'X-RAY DIFFRACTION' 2 ? ? 0.027 ? ? 2 POSITIONAL ? B 1503 ? ? 1 'X-RAY DIFFRACTION' 1 ? ? 0.010 ? ? 3 POSITIONAL ? A 10 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? 0.010 ? ? 4 POSITIONAL ? B 10 ? ? 2 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0000 3.1100 801 . 44 757 99.0000 . . . 0.4381 0.0000 0.3919 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.1100 3.2300 808 . 46 762 100.0000 . . . 0.3626 0.0000 0.3256 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.2300 3.3800 743 . 42 701 99.0000 . . . 0.3261 0.0000 0.2930 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.3800 3.5600 836 . 46 790 100.0000 . . . 0.3587 0.0000 0.2735 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.5600 3.7800 792 . 40 752 100.0000 . . . 0.2883 0.0000 0.2820 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.7800 4.0700 768 . 31 737 100.0000 . . . 0.2518 0.0000 0.2557 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.0700 4.4800 816 . 37 779 100.0000 . . . 0.2441 0.0000 0.2398 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.4800 5.1200 814 . 33 781 100.0000 . . . 0.2230 0.0000 0.2221 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 5.1200 6.4400 780 . 30 750 100.0000 . . . 0.2219 0.0000 0.2241 . . . . . . . 10 . . . 'X-RAY DIFFRACTION' 6.4400 27.0000 794 . 36 758 100.0000 . . . 0.2562 0.0000 0.2078 . . . . . . . 10 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' 2 1 'chain A' 2 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A G 1 . A C 71 . A G 13 A C 83 ? 'chain A' 1 2 1 B G 1 . B C 71 . B G 13 B C 83 ? 'chain B' 2 1 1 C ADE . . C ADE . . A ADE 101 A ADE 101 ? 'chain X' 2 2 1 F ADE . . F ADE . . B ADE 101 B ADE 101 ? 'chain Y' # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 6VWV _struct.title 'Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VWV _struct_keywords.text 'riboswitch, phase transition, time-resolved, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 12 OP1 ? ? ? 1_555 E MG . MG ? ? A A 24 A MG 103 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc2 metalc ? ? A U 50 O2 ? ? ? 1_555 D K . K ? ? A U 62 A K 102 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc3 metalc ? ? D K . K ? ? ? 1_555 B U 50 O2 ? ? A K 102 B U 62 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc4 metalc ? ? B A 12 OP1 ? ? ? 1_555 G MG . MG ? ? B A 24 B MG 102 1_555 ? ? ? ? ? ? ? 2.089 ? ? hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 15 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 16 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 16 A U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 18 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog24 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog25 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? A U 28 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog40 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog44 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog45 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N1 ? ? ? 1_555 B U 50 N3 ? ? A A 35 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 23 N6 ? ? ? 1_555 B U 50 O4 ? ? A A 35 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog58 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog62 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog63 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog64 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog80 hydrog ? ? A U 50 N3 ? ? ? 1_555 B A 23 N1 ? ? A U 62 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 50 O4 ? ? ? 1_555 B A 23 N6 ? ? A U 62 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 13 B C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog83 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 70 N3 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 70 O2 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 70 N4 ? ? B G 14 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 68 N3 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 68 O4 ? ? B A 16 B U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 67 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 67 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 18 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 64 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 64 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 63 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 63 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 40 N1 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 40 N6 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B A 11 N1 ? ? ? 1_555 B G 34 N2 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog105 hydrog ? ? B A 11 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog106 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 26 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B U 16 N3 ? ? ? 1_555 B G 30 O6 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog115 hydrog ? ? B U 16 O2 ? ? ? 1_555 B G 30 N1 ? ? B U 28 B G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog116 hydrog ? ? B A 17 N1 ? ? ? 1_555 B U 29 N3 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B A 17 N6 ? ? ? 1_555 B U 29 O4 ? ? B A 29 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 30 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B U 19 N3 ? ? ? 1_555 B U 27 O4 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog121 hydrog ? ? B U 19 O2 ? ? ? 1_555 B U 27 N3 ? ? B U 31 B U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog122 hydrog ? ? B A 21 N1 ? ? ? 1_555 B A 54 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog123 hydrog ? ? B A 21 N6 ? ? ? 1_555 B A 54 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog124 hydrog ? ? B U 22 O2 ? ? ? 1_555 B G 25 N2 ? ? B U 34 B G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog125 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 53 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog126 hydrog ? ? B U 22 O2 ? ? ? 1_555 B A 53 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog127 hydrog ? ? B A 23 N6 ? ? ? 1_555 B A 52 N1 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog128 hydrog ? ? B A 23 N7 ? ? ? 1_555 B A 52 N6 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog129 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B G 26 N2 ? ? ? 1_555 B A 54 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog136 hydrog ? ? B G 26 N3 ? ? ? 1_555 B A 54 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog137 hydrog ? ? B G 34 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B G 34 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B G 34 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B U 35 N3 ? ? ? 1_555 B U 39 O4 ? ? B U 47 B U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog141 hydrog ? ? B U 37 N3 ? ? ? 1_555 B A 64 N3 ? ? B U 49 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog142 hydrog ? ? B C 38 N4 ? ? ? 1_555 B U 63 O2 ? ? B C 50 B U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog143 hydrog ? ? B C 42 N3 ? ? ? 1_555 B G 60 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 60 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B C 42 O2 ? ? ? 1_555 B G 60 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B A 43 N1 ? ? ? 1_555 B U 59 N3 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B A 43 N6 ? ? ? 1_555 B U 59 O4 ? ? B A 55 B U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B A 44 N1 ? ? ? 1_555 B U 58 N3 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B A 44 N6 ? ? ? 1_555 B U 58 O4 ? ? B A 56 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B G 45 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B G 45 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B G 45 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B A 46 N1 ? ? ? 1_555 B U 56 N3 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B A 46 N6 ? ? ? 1_555 B U 56 O4 ? ? B A 58 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? B G 47 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? B G 47 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? B G 47 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? B C 49 O2 ? ? ? 1_555 B A 53 N6 ? ? B C 61 B A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 6VWV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.028498 _atom_sites.fract_transf_matrix[1][2] -0.011002 _atom_sites.fract_transf_matrix[1][3] -0.003418 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042053 _atom_sites.fract_transf_matrix[2][3] 0.001701 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008117 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G A . n A 1 2 G 2 14 14 G G A . n A 1 3 G 3 15 15 G G A . n A 1 4 A 4 16 16 A A A . n A 1 5 A 5 17 17 A A A . n A 1 6 G 6 18 18 G G A . n A 1 7 A 7 19 19 A A A . n A 1 8 U 8 20 20 U U A . n A 1 9 A 9 21 21 A A A . n A 1 10 U 10 22 22 U U A . n A 1 11 A 11 23 23 A A A . n A 1 12 A 12 24 24 A A A . n A 1 13 U 13 25 25 U U A . n A 1 14 C 14 26 26 C C A . n A 1 15 C 15 27 27 C C A . n A 1 16 U 16 28 28 U U A . n A 1 17 A 17 29 29 A A A . n A 1 18 A 18 30 30 A A A . n A 1 19 U 19 31 31 U U A . n A 1 20 G 20 32 32 G G A . n A 1 21 A 21 33 33 A A A . n A 1 22 U 22 34 34 U U A . n A 1 23 A 23 35 35 A A A . n A 1 24 U 24 36 36 U U A . n A 1 25 G 25 37 37 G G A . n A 1 26 G 26 38 38 G G A . n A 1 27 U 27 39 39 U U A . n A 1 28 U 28 40 40 U U A . n A 1 29 U 29 41 41 U U A . n A 1 30 G 30 42 42 G G A . n A 1 31 G 31 43 43 G G A . n A 1 32 G 32 44 44 G G A . n A 1 33 A 33 45 45 A A A . n A 1 34 G 34 46 46 G G A . n A 1 35 U 35 47 47 U U A . n A 1 36 U 36 48 48 U U A . n A 1 37 U 37 49 49 U U A . n A 1 38 C 38 50 50 C C A . n A 1 39 U 39 51 51 U U A . n A 1 40 A 40 52 52 A A A . n A 1 41 C 41 53 53 C C A . n A 1 42 C 42 54 54 C C A . n A 1 43 A 43 55 55 A A A . n A 1 44 A 44 56 56 A A A . n A 1 45 G 45 57 57 G G A . n A 1 46 A 46 58 58 A A A . n A 1 47 G 47 59 59 G G A . n A 1 48 C 48 60 60 C C A . n A 1 49 C 49 61 61 C C A . n A 1 50 U 50 62 62 U U A . n A 1 51 U 51 63 63 U U A . n A 1 52 A 52 64 64 A A A . n A 1 53 A 53 65 65 A A A . n A 1 54 A 54 66 66 A A A . n A 1 55 C 55 67 67 C C A . n A 1 56 U 56 68 68 U U A . n A 1 57 C 57 69 69 C C A . n A 1 58 U 58 70 70 U U A . n A 1 59 U 59 71 71 U U A . n A 1 60 G 60 72 72 G G A . n A 1 61 A 61 73 73 A A A . n A 1 62 U 62 74 74 U U A . n A 1 63 U 63 75 75 U U A . n A 1 64 A 64 76 76 A A A . n A 1 65 U 65 77 77 U U A . n A 1 66 C 66 78 78 C C A . n A 1 67 U 67 79 79 U U A . n A 1 68 U 68 80 80 U U A . n A 1 69 C 69 81 81 C C A . n A 1 70 C 70 82 82 C C A . n A 1 71 C 71 83 83 C C A . n B 1 1 G 1 13 13 G G B . n B 1 2 G 2 14 14 G G B . n B 1 3 G 3 15 15 G G B . n B 1 4 A 4 16 16 A A B . n B 1 5 A 5 17 17 A A B . n B 1 6 G 6 18 18 G G B . n B 1 7 A 7 19 19 A A B . n B 1 8 U 8 20 20 U U B . n B 1 9 A 9 21 21 A A B . n B 1 10 U 10 22 22 U U B . n B 1 11 A 11 23 23 A A B . n B 1 12 A 12 24 24 A A B . n B 1 13 U 13 25 25 U U B . n B 1 14 C 14 26 26 C C B . n B 1 15 C 15 27 27 C C B . n B 1 16 U 16 28 28 U U B . n B 1 17 A 17 29 29 A A B . n B 1 18 A 18 30 30 A A B . n B 1 19 U 19 31 31 U U B . n B 1 20 G 20 32 32 G G B . n B 1 21 A 21 33 33 A A B . n B 1 22 U 22 34 34 U U B . n B 1 23 A 23 35 35 A A B . n B 1 24 U 24 36 36 U U B . n B 1 25 G 25 37 37 G G B . n B 1 26 G 26 38 38 G G B . n B 1 27 U 27 39 39 U U B . n B 1 28 U 28 40 40 U U B . n B 1 29 U 29 41 41 U U B . n B 1 30 G 30 42 42 G G B . n B 1 31 G 31 43 43 G G B . n B 1 32 G 32 44 44 G G B . n B 1 33 A 33 45 45 A A B . n B 1 34 G 34 46 46 G G B . n B 1 35 U 35 47 47 U U B . n B 1 36 U 36 48 48 U U B . n B 1 37 U 37 49 49 U U B . n B 1 38 C 38 50 50 C C B . n B 1 39 U 39 51 51 U U B . n B 1 40 A 40 52 52 A A B . n B 1 41 C 41 53 53 C C B . n B 1 42 C 42 54 54 C C B . n B 1 43 A 43 55 55 A A B . n B 1 44 A 44 56 56 A A B . n B 1 45 G 45 57 57 G G B . n B 1 46 A 46 58 58 A A B . n B 1 47 G 47 59 59 G G B . n B 1 48 C 48 60 60 C C B . n B 1 49 C 49 61 61 C C B . n B 1 50 U 50 62 62 U U B . n B 1 51 U 51 63 63 U U B . n B 1 52 A 52 64 64 A A B . n B 1 53 A 53 65 65 A A B . n B 1 54 A 54 66 66 A A B . n B 1 55 C 55 67 67 C C B . n B 1 56 U 56 68 68 U U B . n B 1 57 C 57 69 69 C C B . n B 1 58 U 58 70 70 U U B . n B 1 59 U 59 71 71 U U B . n B 1 60 G 60 72 72 G G B . n B 1 61 A 61 73 73 A A B . n B 1 62 U 62 74 74 U U B . n B 1 63 U 63 75 75 U U B . n B 1 64 A 64 76 76 A A B . n B 1 65 U 65 77 77 U U B . n B 1 66 C 66 78 78 C C B . n B 1 67 U 67 79 79 U U B . n B 1 68 U 68 80 80 U U B . n B 1 69 C 69 81 81 C C B . n B 1 70 C 70 82 82 C C B . n B 1 71 C 71 83 83 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADE 1 101 101 ADE ADE A . D 3 K 1 102 1 K K A . E 4 MG 1 103 2 MG MG A . F 2 ADE 1 101 101 ADE ADE B . G 4 MG 1 102 1 MG MG B . H 5 HOH 1 201 2 HOH HOH A . I 5 HOH 1 201 1 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 50 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 62 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id K _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id K _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id K _pdbx_struct_conn_angle.ptnr2_auth_seq_id 102 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 50 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 62 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 103.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-11 2 'Structure model' 1 1 2021-03-10 3 'Structure model' 1 2 2021-10-06 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' database_2 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.year' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' 14 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 15 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 16 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 17 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 18 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 19 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 20 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 21 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.200 _pdbx_refine_tls.origin_y -12.062 _pdbx_refine_tls.origin_z 62.777 _pdbx_refine_tls.T[1][1] 0.3591 _pdbx_refine_tls.T[2][2] 0.3936 _pdbx_refine_tls.T[3][3] 0.4769 _pdbx_refine_tls.T[1][2] -0.0002 _pdbx_refine_tls.T[1][3] 0.0591 _pdbx_refine_tls.T[2][3] -0.0243 _pdbx_refine_tls.L[1][1] 0.4806 _pdbx_refine_tls.L[2][2] 0.6484 _pdbx_refine_tls.L[3][3] -0.0781 _pdbx_refine_tls.L[1][2] 0.0056 _pdbx_refine_tls.L[1][3] 0.0526 _pdbx_refine_tls.L[2][3] -0.0194 _pdbx_refine_tls.S[1][1] 0.1885 _pdbx_refine_tls.S[2][2] 0.0509 _pdbx_refine_tls.S[3][3] 0.0002 _pdbx_refine_tls.S[1][2] -0.1165 _pdbx_refine_tls.S[1][3] 0.1012 _pdbx_refine_tls.S[2][3] -0.0620 _pdbx_refine_tls.S[2][1] -0.0659 _pdbx_refine_tls.S[3][1] -0.0802 _pdbx_refine_tls.S[3][2] 0.0010 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 13 A 83 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 102 A 102 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 201 A 201 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 1 A 103 A 103 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 1 A 101 A 101 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 1 B 13 B 83 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 1 B 201 B 201 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 1 B 102 B 102 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 1 B 101 B 101 ;( CHAIN A AND ( RESID 13:83 OR RESID 102:102 OR RESID 201:201 OR RESID 103:103 OR RESID 101:101 ) ) OR ( CHAIN B AND ( RESID 13:83 OR RESID 201:201 OR RESID 102:102 OR RESID 101:101 ) ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18rc5_3822 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6VWV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 13 ? ? OP3 A G 13 ? ? 1.482 1.607 -0.125 0.012 N 2 1 P B G 13 ? ? OP3 B G 13 ? ? 1.482 1.607 -0.125 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A A 64 ? ? "C1'" A A 64 ? ? N9 A A 64 ? ? 102.37 108.20 -5.83 0.80 N 2 1 "O4'" B A 64 ? ? "C1'" B A 64 ? ? N9 B A 64 ? ? 102.42 108.20 -5.78 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 K K K N N 129 MG MG MG N N 130 U OP3 O N N 131 U P P N N 132 U OP1 O N N 133 U OP2 O N N 134 U "O5'" O N N 135 U "C5'" C N N 136 U "C4'" C N R 137 U "O4'" O N N 138 U "C3'" C N S 139 U "O3'" O N N 140 U "C2'" C N R 141 U "O2'" O N N 142 U "C1'" C N R 143 U N1 N N N 144 U C2 C N N 145 U O2 O N N 146 U N3 N N N 147 U C4 C N N 148 U O4 O N N 149 U C5 C N N 150 U C6 C N N 151 U HOP3 H N N 152 U HOP2 H N N 153 U "H5'" H N N 154 U "H5''" H N N 155 U "H4'" H N N 156 U "H3'" H N N 157 U "HO3'" H N N 158 U "H2'" H N N 159 U "HO2'" H N N 160 U "H1'" H N N 161 U H3 H N N 162 U H5 H N N 163 U H6 H N N 164 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 U OP3 P sing N N 134 U OP3 HOP3 sing N N 135 U P OP1 doub N N 136 U P OP2 sing N N 137 U P "O5'" sing N N 138 U OP2 HOP2 sing N N 139 U "O5'" "C5'" sing N N 140 U "C5'" "C4'" sing N N 141 U "C5'" "H5'" sing N N 142 U "C5'" "H5''" sing N N 143 U "C4'" "O4'" sing N N 144 U "C4'" "C3'" sing N N 145 U "C4'" "H4'" sing N N 146 U "O4'" "C1'" sing N N 147 U "C3'" "O3'" sing N N 148 U "C3'" "C2'" sing N N 149 U "C3'" "H3'" sing N N 150 U "O3'" "HO3'" sing N N 151 U "C2'" "O2'" sing N N 152 U "C2'" "C1'" sing N N 153 U "C2'" "H2'" sing N N 154 U "O2'" "HO2'" sing N N 155 U "C1'" N1 sing N N 156 U "C1'" "H1'" sing N N 157 U N1 C2 sing N N 158 U N1 C6 sing N N 159 U C2 O2 doub N N 160 U C2 N3 sing N N 161 U N3 C4 sing N N 162 U N3 H3 sing N N 163 U C4 O4 doub N N 164 U C4 C5 sing N N 165 U C5 C6 doub N N 166 U C5 H5 sing N N 167 U C6 H6 sing N N 168 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6VWV 'double helix' 6VWV 'a-form double helix' 6VWV 'mismatched base pair' 6VWV 'internal loop' 6VWV 'triple helix' 6VWV 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 1.241 1.092 -0.253 -18.173 23.622 -35.093 1 A_G13:C83_A A 13 ? A 83 ? ? ? 1 A G 2 1_555 A C 70 1_555 -0.047 0.027 0.215 -3.380 11.117 -1.930 2 A_G14:C82_A A 14 ? A 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.186 -0.366 0.911 -3.025 3.938 6.929 3 A_G15:C81_A A 15 ? A 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 -0.025 -0.628 1.096 -0.454 3.863 8.002 4 A_A16:U80_A A 16 ? A 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 -0.048 -0.278 0.584 -1.226 1.963 5.120 5 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 -0.241 -0.129 0.059 -3.416 3.309 5.813 6 A_G18:C78_A A 18 ? A 78 ? 19 1 1 A A 7 1_555 A U 65 1_555 0.024 -0.123 -0.235 -1.793 3.200 1.050 7 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 -0.061 -0.087 -0.278 0.811 0.616 -1.471 8 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.060 -0.108 0.094 -0.709 -8.374 -1.542 9 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 35 1_555 A U 39 1_555 3.601 0.439 0.486 31.286 39.679 -85.120 10 A_U47:U51_A A 47 ? A 51 ? ? ? 1 A U 10 1_555 A A 40 1_555 -0.033 -0.094 -0.067 7.115 5.498 0.465 11 A_U22:A52_A A 22 ? A 52 ? 20 1 1 A G 34 1_555 A C 41 1_555 -0.172 -0.100 0.297 -10.691 -3.497 -3.003 12 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A A 33 1_555 A U 13 1_555 0.047 -0.120 0.087 -3.054 -4.320 -0.012 13 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A G 32 1_555 A C 14 1_555 -0.170 -0.145 0.263 -3.213 0.294 0.811 14 A_G44:C26_A A 44 ? A 26 ? 19 1 1 A G 31 1_555 A C 15 1_555 -0.184 -0.087 -0.132 -2.647 2.821 0.907 15 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A G 30 1_555 A U 16 1_555 -2.334 -0.341 -0.296 -5.163 -1.064 1.738 16 A_G42:U28_A A 42 ? A 28 ? 28 1 1 A U 29 1_555 A A 17 1_555 0.028 -0.159 -0.225 2.896 -3.354 2.217 17 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A U 28 1_555 A A 18 1_555 0.058 -0.270 0.457 -11.096 -5.017 0.398 18 A_U40:A30_A A 40 ? A 30 ? 20 1 1 A U 27 1_555 A U 19 1_555 -2.161 -2.003 -0.114 -8.350 -14.236 4.865 19 A_U39:U31_A A 39 ? A 31 ? 16 1 1 A A 23 1_555 A A 52 1_555 -4.075 1.813 -0.021 -3.136 6.345 -104.126 20 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A C 49 1_555 A G 25 1_555 0.125 -0.249 0.847 -3.460 -3.916 -0.971 21 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A A 53 1_555 A U 22 1_555 -3.548 -1.349 -0.245 -0.823 -4.073 -101.910 22 A_A65:U34_A A 65 ? A 34 ? 24 4 1 A G 26 1_555 A C 48 1_555 -0.145 -0.102 0.387 9.559 -3.964 0.617 23 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A C 55 1_555 A G 47 1_555 0.269 -0.249 -0.364 9.549 -12.761 3.145 24 A_C67:G59_A A 67 ? A 59 ? 19 1 1 A U 56 1_555 A A 46 1_555 -0.124 -0.166 0.356 -1.524 -6.398 1.567 25 A_U68:A58_A A 68 ? A 58 ? 20 1 1 A C 57 1_555 A G 45 1_555 0.163 -0.169 0.432 2.461 -4.375 0.831 26 A_C69:G57_A A 69 ? A 57 ? 19 1 1 A U 58 1_555 A A 44 1_555 -0.155 -0.093 0.454 0.744 -4.036 -0.294 27 A_U70:A56_A A 70 ? A 56 ? 20 1 1 A U 59 1_555 A A 43 1_555 -0.015 -0.084 0.215 7.651 -5.373 -4.569 28 A_U71:A55_A A 71 ? A 55 ? 20 1 1 A G 60 1_555 A C 42 1_555 -0.134 -0.076 -0.277 7.833 -5.922 0.541 29 A_G72:C54_A A 72 ? A 54 ? 19 1 1 B G 1 1_555 B C 71 1_555 1.243 1.090 -0.251 -18.120 23.400 -35.183 30 B_G13:C83_B B 13 ? B 83 ? ? ? 1 B G 2 1_555 B C 70 1_555 -0.046 0.027 0.216 -3.321 11.143 -1.949 31 B_G14:C82_B B 14 ? B 82 ? 19 1 1 B G 3 1_555 B C 69 1_555 -0.185 -0.366 0.911 -3.034 3.971 6.931 32 B_G15:C81_B B 15 ? B 81 ? 19 1 1 B A 4 1_555 B U 68 1_555 -0.027 -0.627 1.098 -0.446 3.843 8.022 33 B_A16:U80_B B 16 ? B 80 ? 20 1 1 B A 5 1_555 B U 67 1_555 -0.047 -0.277 0.582 -1.221 2.002 5.095 34 B_A17:U79_B B 17 ? B 79 ? 20 1 1 B G 6 1_555 B C 66 1_555 -0.239 -0.129 0.059 -3.437 3.279 5.787 35 B_G18:C78_B B 18 ? B 78 ? 19 1 1 B A 7 1_555 B U 65 1_555 0.026 -0.122 -0.239 -1.875 3.183 0.995 36 B_A19:U77_B B 19 ? B 77 ? 20 1 1 B U 8 1_555 B A 64 1_555 -0.057 -0.088 -0.279 0.806 0.627 -1.458 37 B_U20:A76_B B 20 ? B 76 ? 20 1 1 B A 9 1_555 B U 63 1_555 0.060 -0.106 0.090 -0.773 -8.301 -1.568 38 B_A21:U75_B B 21 ? B 75 ? 20 1 1 B U 35 1_555 B U 39 1_555 3.605 0.439 0.492 31.272 39.744 -85.139 39 B_U47:U51_B B 47 ? B 51 ? ? ? 1 B U 10 1_555 B A 40 1_555 -0.033 -0.094 -0.061 6.991 5.612 0.490 40 B_U22:A52_B B 22 ? B 52 ? 20 1 1 B G 34 1_555 B C 41 1_555 -0.171 -0.097 0.292 -10.771 -3.461 -2.984 41 B_G46:C53_B B 46 ? B 53 ? 19 1 1 B A 33 1_555 B U 13 1_555 0.050 -0.119 0.098 -2.948 -4.409 -0.046 42 B_A45:U25_B B 45 ? B 25 ? 20 1 1 B G 32 1_555 B C 14 1_555 -0.168 -0.144 0.261 -3.418 0.340 0.826 43 B_G44:C26_B B 44 ? B 26 ? 19 1 1 B G 31 1_555 B C 15 1_555 -0.186 -0.086 -0.135 -2.727 2.665 0.968 44 B_G43:C27_B B 43 ? B 27 ? 19 1 1 B G 30 1_555 B U 16 1_555 -2.335 -0.342 -0.298 -5.126 -1.137 1.758 45 B_G42:U28_B B 42 ? B 28 ? 28 1 1 B U 29 1_555 B A 17 1_555 0.025 -0.159 -0.228 2.970 -3.310 2.167 46 B_U41:A29_B B 41 ? B 29 ? 20 1 1 B U 28 1_555 B A 18 1_555 0.056 -0.270 0.463 -11.098 -5.198 0.361 47 B_U40:A30_B B 40 ? B 30 ? 20 1 1 B U 27 1_555 B U 19 1_555 -2.163 -2.001 -0.117 -8.459 -14.183 4.972 48 B_U39:U31_B B 39 ? B 31 ? 16 1 1 B A 23 1_555 B A 52 1_555 -4.068 1.816 0.000 -3.465 6.912 -104.036 49 B_A35:A64_B B 35 ? B 64 ? 5 4 1 B C 49 1_555 B G 25 1_555 0.126 -0.249 0.857 -3.485 -4.011 -0.968 50 B_C61:G37_B B 61 ? B 37 ? 19 1 1 B A 53 1_555 B U 22 1_555 -3.549 -1.352 -0.245 -0.852 -4.061 -101.919 51 B_A65:U34_B B 65 ? B 34 ? 24 4 1 B G 26 1_555 B C 48 1_555 -0.147 -0.103 0.384 9.583 -3.941 0.574 52 B_G38:C60_B B 38 ? B 60 ? 19 1 1 B C 55 1_555 B G 47 1_555 0.266 -0.251 -0.363 9.425 -12.780 3.055 53 B_C67:G59_B B 67 ? B 59 ? 19 1 1 B U 56 1_555 B A 46 1_555 -0.126 -0.168 0.355 -1.543 -6.308 1.525 54 B_U68:A58_B B 68 ? B 58 ? 20 1 1 B C 57 1_555 B G 45 1_555 0.154 -0.168 0.434 2.360 -4.220 0.658 55 B_C69:G57_B B 69 ? B 57 ? 19 1 1 B U 58 1_555 B A 44 1_555 -0.161 -0.093 0.456 0.664 -4.074 -0.329 56 B_U70:A56_B B 70 ? B 56 ? 20 1 1 B U 59 1_555 B A 43 1_555 -0.013 -0.083 0.218 7.583 -5.328 -4.491 57 B_U71:A55_B B 71 ? B 55 ? 20 1 1 B G 60 1_555 B C 42 1_555 -0.127 -0.074 -0.272 7.886 -5.952 0.448 58 B_G72:C54_B B 72 ? B 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 2.264 -1.780 2.972 -4.539 14.672 25.810 -5.612 -5.049 1.374 29.729 9.197 29.967 1 AA_G13G14:C82C83_AA A 13 ? A 83 ? A 14 ? A 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.814 -1.990 3.277 -5.701 13.369 30.059 -5.382 -2.235 2.048 24.086 10.271 33.315 2 AA_G14G15:C81C82_AA A 14 ? A 82 ? A 15 ? A 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 -0.015 -1.286 3.161 -3.188 6.063 36.614 -2.769 -0.372 2.909 9.549 5.021 37.228 3 AA_G15A16:U80C81_AA A 15 ? A 81 ? A 16 ? A 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 -0.013 -1.215 3.262 3.198 7.813 34.507 -3.090 0.469 2.914 12.933 -5.293 35.494 4 AA_A16A17:U79U80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 0.069 -1.424 3.258 1.939 7.471 32.485 -3.658 0.186 2.868 13.125 -3.407 33.365 5 AA_A17G18:C78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.629 -1.608 3.162 0.190 7.886 31.452 -4.143 1.157 2.687 14.269 -0.343 32.402 6 AA_G18A19:U77C78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 -0.184 -1.640 3.231 1.830 7.381 30.843 -4.257 0.649 2.759 13.620 -3.377 31.745 7 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.555 -1.732 3.199 4.851 22.412 30.746 -5.001 -0.339 1.669 36.572 -7.916 38.189 8 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 9 1_555 A U 63 1_555 A U 35 1_555 A U 39 1_555 2.230 1.560 5.511 -28.665 -162.298 82.544 2.504 -1.425 2.213 -83.678 14.779 168.598 9 AA_A21U47:U51U75_AA A 21 ? A 75 ? A 47 ? A 51 ? 1 A U 35 1_555 A U 39 1_555 A U 10 1_555 A A 40 1_555 0.389 0.674 -3.274 -8.772 -21.384 -3.473 -7.560 3.379 0.273 75.468 -30.957 -23.369 10 AA_U47U22:A52U51_AA A 47 ? A 51 ? A 22 ? A 52 ? 1 A U 10 1_555 A A 40 1_555 A G 34 1_555 A C 41 1_555 1.866 0.325 -3.174 1.512 -7.890 -43.420 -1.153 2.346 -3.132 10.556 2.023 -44.122 11 AA_U22G46:C53A52_AA A 22 ? A 52 ? A 46 ? A 53 ? 1 A G 34 1_555 A C 41 1_555 A A 33 1_555 A U 13 1_555 -2.542 0.709 -3.110 -13.319 -3.613 -51.008 -1.042 -1.963 -3.569 4.110 -15.150 -52.721 12 AA_G46A45:U25C53_AA A 46 ? A 53 ? A 45 ? A 25 ? 1 A A 33 1_555 A U 13 1_555 A G 32 1_555 A C 14 1_555 -0.012 1.882 -3.229 -2.792 -1.521 -33.563 -3.486 0.421 -3.134 2.627 -4.821 -33.709 13 AA_A45G44:C26U25_AA A 45 ? A 25 ? A 44 ? A 26 ? 1 A G 32 1_555 A C 14 1_555 A G 31 1_555 A C 15 1_555 -0.247 1.924 -3.385 0.315 -3.113 -28.692 -4.556 -0.567 -3.160 6.257 0.633 -28.859 14 AA_G44G43:C27C26_AA A 44 ? A 26 ? A 43 ? A 27 ? 1 A G 31 1_555 A C 15 1_555 A G 30 1_555 A U 16 1_555 0.016 1.776 -3.207 1.865 -4.875 -36.591 -3.424 -0.213 -2.951 7.717 2.952 -36.949 15 AA_G43G42:U28C27_AA A 43 ? A 27 ? A 42 ? A 28 ? 1 A G 30 1_555 A U 16 1_555 A U 29 1_555 A A 17 1_555 -0.145 2.043 -3.314 3.169 -11.663 -23.376 -7.220 -1.060 -2.043 26.624 7.234 -26.277 16 AA_G42U41:A29U28_AA A 42 ? A 28 ? A 41 ? A 29 ? 1 A U 29 1_555 A A 17 1_555 A U 28 1_555 A A 18 1_555 -0.538 2.247 -2.925 -7.804 -4.887 -22.131 -6.766 0.859 -2.426 12.082 -19.290 -23.948 17 AA_U41U40:A30A29_AA A 41 ? A 29 ? A 40 ? A 30 ? 1 A U 28 1_555 A A 18 1_555 A U 27 1_555 A U 19 1_555 0.218 1.139 -3.429 0.510 -0.420 -45.661 -1.507 0.234 -3.421 0.541 0.657 -45.666 18 AA_U40U39:U31A30_AA A 40 ? A 30 ? A 39 ? A 31 ? 1 A A 23 1_555 A A 52 1_555 A C 49 1_555 A G 25 1_555 3.459 0.543 -3.688 4.100 -4.609 136.810 0.261 -1.887 -3.647 -2.478 -2.205 136.876 19 AA_A35C61:G37A64_AA A 35 ? A 64 ? A 61 ? A 37 ? 1 A C 49 1_555 A G 25 1_555 A A 53 1_555 A U 22 1_555 -1.631 5.272 -4.919 84.746 -139.141 171.884 2.483 0.723 -5.282 -69.589 -42.384 178.796 20 AA_C61A65:U34G37_AA A 61 ? A 37 ? A 65 ? A 34 ? 1 A G 26 1_555 A C 48 1_555 A C 55 1_555 A G 47 1_555 -2.484 -0.417 3.042 -0.120 -0.192 56.912 -0.428 2.601 3.048 -0.202 0.126 56.912 21 AA_G38C67:G59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A C 55 1_555 A G 47 1_555 A U 56 1_555 A A 46 1_555 -0.326 -1.631 3.544 -3.494 2.879 33.206 -3.335 -0.048 3.410 5.008 6.078 33.505 22 AA_C67U68:A58G59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A U 56 1_555 A A 46 1_555 A C 57 1_555 A G 45 1_555 -0.188 -1.421 3.242 0.120 0.855 31.498 -2.774 0.369 3.203 1.575 -0.220 31.510 23 AA_U68C69:G57A58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A C 57 1_555 A G 45 1_555 A U 58 1_555 A A 44 1_555 -0.362 -1.339 3.267 -0.524 4.840 31.499 -3.295 0.567 3.038 8.850 0.958 31.863 24 AA_C69U70:A56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A U 58 1_555 A A 44 1_555 A U 59 1_555 A A 43 1_555 -0.084 -1.127 3.103 2.318 3.531 32.607 -2.553 0.517 2.955 6.257 -4.107 32.872 25 AA_U70U71:A55A56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A U 59 1_555 A A 43 1_555 A G 60 1_555 A C 42 1_555 0.426 -1.522 3.120 4.066 10.813 30.262 -4.426 -0.127 2.479 19.827 -7.455 32.343 26 AA_U71G72:C54A55_AA A 71 ? A 55 ? A 72 ? A 54 ? 1 B G 1 1_555 B C 71 1_555 B G 2 1_555 B C 70 1_555 2.260 -1.779 2.976 -4.604 14.556 25.787 -5.614 -5.065 1.380 29.547 9.346 29.901 27 BB_G13G14:C82C83_BB B 13 ? B 83 ? B 14 ? B 82 ? 1 B G 2 1_555 B C 70 1_555 B G 3 1_555 B C 69 1_555 0.814 -1.990 3.279 -5.694 13.375 30.052 -5.386 -2.235 2.050 24.102 10.260 33.310 28 BB_G14G15:C81C82_BB B 14 ? B 82 ? B 15 ? B 81 ? 1 B G 3 1_555 B C 69 1_555 B A 4 1_555 B U 68 1_555 -0.015 -1.287 3.160 -3.200 6.050 36.593 -2.769 -0.375 2.909 9.533 5.042 37.206 29 BB_G15A16:U80C81_BB B 15 ? B 81 ? B 16 ? B 80 ? 1 B A 4 1_555 B U 68 1_555 B A 5 1_555 B U 67 1_555 -0.014 -1.215 3.262 3.218 7.833 34.528 -3.088 0.473 2.913 12.957 -5.323 35.521 30 BB_A16A17:U79U80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 B A 5 1_555 B U 67 1_555 B G 6 1_555 B C 66 1_555 0.068 -1.425 3.259 1.917 7.484 32.497 -3.659 0.184 2.868 13.143 -3.367 33.379 31 BB_A17G18:C78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 B G 6 1_555 B C 66 1_555 B A 7 1_555 B U 65 1_555 -0.631 -1.607 3.165 0.229 7.880 31.439 -4.143 1.167 2.689 14.262 -0.415 32.388 32 BB_G18A19:U77C78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 B A 7 1_555 B U 65 1_555 B U 8 1_555 B A 64 1_555 -0.183 -1.638 3.229 1.806 7.399 30.865 -4.252 0.642 2.757 13.644 -3.331 31.768 33 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 B U 8 1_555 B A 64 1_555 B A 9 1_555 B U 63 1_555 0.553 -1.733 3.201 4.866 22.443 30.705 -5.008 -0.333 1.666 36.644 -7.945 38.177 34 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 B A 9 1_555 B U 63 1_555 B U 35 1_555 B U 39 1_555 2.234 1.572 5.504 -28.719 -162.341 82.818 2.503 -1.426 2.211 -83.678 14.803 168.661 35 BB_A21U47:U51U75_BB B 21 ? B 75 ? B 47 ? B 51 ? 1 B U 35 1_555 B U 39 1_555 B U 10 1_555 B A 40 1_555 0.387 0.677 -3.268 -8.781 -21.404 -3.515 -7.543 3.363 0.269 75.380 -30.926 -23.397 36 BB_U47U22:A52U51_BB B 47 ? B 51 ? B 22 ? B 52 ? 1 B U 10 1_555 B A 40 1_555 B G 34 1_555 B C 41 1_555 1.862 0.324 -3.178 1.567 -7.833 -43.396 -1.149 2.337 -3.139 10.487 2.098 -44.090 37 BB_U22G46:C53A52_BB B 22 ? B 52 ? B 46 ? B 53 ? 1 B G 34 1_555 B C 41 1_555 B A 33 1_555 B U 13 1_555 -2.542 0.711 -3.116 -13.414 -3.603 -51.001 -1.044 -1.954 -3.579 4.098 -15.256 -52.736 38 BB_G46A45:U25C53_BB B 46 ? B 53 ? B 45 ? B 25 ? 1 B A 33 1_555 B U 13 1_555 B G 32 1_555 B C 14 1_555 -0.013 1.886 -3.219 -2.760 -1.557 -33.575 -3.496 0.413 -3.122 2.687 -4.764 -33.719 39 BB_A45G44:C26U25_BB B 45 ? B 25 ? B 44 ? B 26 ? 1 B G 32 1_555 B C 14 1_555 B G 31 1_555 B C 15 1_555 -0.249 1.923 -3.388 0.323 -3.032 -28.734 -4.531 -0.571 -3.170 6.089 0.648 -28.892 40 BB_G44G43:C27C26_BB B 44 ? B 26 ? B 43 ? B 27 ? 1 B G 31 1_555 B C 15 1_555 B G 30 1_555 B U 16 1_555 0.015 1.776 -3.210 1.864 -4.880 -36.580 -3.426 -0.215 -2.954 7.727 2.951 -36.938 41 BB_G43G42:U28C27_BB B 43 ? B 27 ? B 42 ? B 28 ? 1 B G 30 1_555 B U 16 1_555 B U 29 1_555 B A 17 1_555 -0.146 2.042 -3.318 3.210 -11.673 -23.364 -7.224 -1.072 -2.044 26.653 7.330 -26.276 42 BB_G42U41:A29U28_BB B 42 ? B 28 ? B 41 ? B 29 ? 1 B U 29 1_555 B A 17 1_555 B U 28 1_555 B A 18 1_555 -0.536 2.249 -2.924 -7.891 -4.863 -22.139 -6.754 0.884 -2.426 12.010 -19.487 -23.979 43 BB_U41U40:A30A29_BB B 41 ? B 29 ? B 40 ? B 30 ? 1 B U 28 1_555 B A 18 1_555 B U 27 1_555 B U 19 1_555 0.220 1.137 -3.425 0.624 -0.474 -45.679 -1.508 0.226 -3.416 0.611 0.804 -45.685 44 BB_U40U39:U31A30_BB B 40 ? B 30 ? B 39 ? B 31 ? 1 B A 23 1_555 B A 52 1_555 B C 49 1_555 B G 25 1_555 3.468 0.535 -3.699 3.882 -4.959 136.758 0.254 -1.891 -3.661 -2.666 -2.088 136.826 45 BB_A35C61:G37A64_BB B 35 ? B 64 ? B 61 ? B 37 ? 1 B C 49 1_555 B G 25 1_555 B A 53 1_555 B U 22 1_555 -1.621 5.260 -4.935 84.784 -139.162 172.175 2.483 0.721 -5.284 -69.598 -42.402 178.841 46 BB_C61A65:U34G37_BB B 61 ? B 37 ? B 65 ? B 34 ? 1 B G 26 1_555 B C 48 1_555 B C 55 1_555 B G 47 1_555 -2.485 -0.418 3.049 -0.113 -0.231 56.901 -0.427 2.602 3.055 -0.242 0.118 56.901 47 BB_G38C67:G59C60_BB B 38 ? B 60 ? B 67 ? B 59 ? 1 B C 55 1_555 B G 47 1_555 B U 56 1_555 B A 46 1_555 -0.323 -1.634 3.541 -3.488 2.971 33.223 -3.353 -0.051 3.401 5.166 6.065 33.529 48 BB_C67U68:A58G59_BB B 67 ? B 59 ? B 68 ? B 58 ? 1 B U 56 1_555 B A 46 1_555 B C 57 1_555 B G 45 1_555 -0.193 -1.421 3.246 0.110 0.798 31.443 -2.769 0.376 3.209 1.473 -0.203 31.453 49 BB_U68C69:G57A58_BB B 68 ? B 58 ? B 69 ? B 57 ? 1 B C 57 1_555 B G 45 1_555 B U 58 1_555 B A 44 1_555 -0.356 -1.343 3.266 -0.538 4.834 31.522 -3.297 0.554 3.037 8.832 0.982 31.886 50 BB_C69U70:A56G57_BB B 69 ? B 57 ? B 70 ? B 56 ? 1 B U 58 1_555 B A 44 1_555 B U 59 1_555 B A 43 1_555 -0.082 -1.128 3.101 2.298 3.578 32.651 -2.557 0.508 2.952 6.331 -4.065 32.920 51 BB_U70U71:A55A56_BB B 70 ? B 56 ? B 71 ? B 55 ? 1 B U 59 1_555 B A 43 1_555 B G 60 1_555 B C 42 1_555 0.420 -1.523 3.116 4.060 10.733 30.317 -4.410 -0.118 2.481 19.660 -7.437 32.368 52 BB_U71G72:C54A55_BB B 71 ? B 55 ? B 72 ? B 54 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ADE _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ADE _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4TZX _pdbx_initial_refinement_model.details ? # _pdbx_serial_crystallography_data_reduction.diffrn_id 1 _pdbx_serial_crystallography_data_reduction.frames_total 250579 _pdbx_serial_crystallography_data_reduction.xfel_pulse_events ? _pdbx_serial_crystallography_data_reduction.frame_hits ? _pdbx_serial_crystallography_data_reduction.crystal_hits 12406 _pdbx_serial_crystallography_data_reduction.droplet_hits ? _pdbx_serial_crystallography_data_reduction.frames_failed_index ? _pdbx_serial_crystallography_data_reduction.frames_indexed 3770 _pdbx_serial_crystallography_data_reduction.lattices_indexed ? _pdbx_serial_crystallography_data_reduction.xfel_run_numbers ? # _pdbx_serial_crystallography_measurement.diffrn_id 1 _pdbx_serial_crystallography_measurement.pulse_energy 4.17 _pdbx_serial_crystallography_measurement.pulse_duration 43 _pdbx_serial_crystallography_measurement.xfel_pulse_repetition_rate 120 _pdbx_serial_crystallography_measurement.pulse_photon_energy 9.5 _pdbx_serial_crystallography_measurement.photons_per_pulse ? _pdbx_serial_crystallography_measurement.source_size ? _pdbx_serial_crystallography_measurement.source_distance ? _pdbx_serial_crystallography_measurement.focal_spot_size ? _pdbx_serial_crystallography_measurement.collimation ? _pdbx_serial_crystallography_measurement.collection_time_total ? # _pdbx_serial_crystallography_sample_delivery.diffrn_id 1 _pdbx_serial_crystallography_sample_delivery.description 'liquid injection' _pdbx_serial_crystallography_sample_delivery.method injection # _pdbx_serial_crystallography_sample_delivery_injection.diffrn_id 1 _pdbx_serial_crystallography_sample_delivery_injection.description GDVN _pdbx_serial_crystallography_sample_delivery_injection.injector_diameter 75 _pdbx_serial_crystallography_sample_delivery_injection.injector_temperature ? _pdbx_serial_crystallography_sample_delivery_injection.injector_pressure ? _pdbx_serial_crystallography_sample_delivery_injection.flow_rate 15 _pdbx_serial_crystallography_sample_delivery_injection.carrier_solvent ? _pdbx_serial_crystallography_sample_delivery_injection.crystal_concentration ? _pdbx_serial_crystallography_sample_delivery_injection.preparation ? _pdbx_serial_crystallography_sample_delivery_injection.power_by ? _pdbx_serial_crystallography_sample_delivery_injection.injector_nozzle ? _pdbx_serial_crystallography_sample_delivery_injection.jet_diameter ? _pdbx_serial_crystallography_sample_delivery_injection.filter_size 20 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #