data_6W0O # _entry.id 6W0O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6W0O pdb_00006w0o 10.2210/pdb6w0o/pdb WWPDB D_1000247143 ? ? BMRB 30731 ? 10.13018/BMR30731 EMDB EMD-21501 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-13 2 'Structure model' 1 1 2021-01-27 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 8 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6W0O _pdbx_database_status.recvd_initial_deposition_date 2020-03-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB ;Amyloid-beta(1-40) fibril derived from Alzheimer's disease cortical tissue ; 30731 unspecified EMDB ;Amyloid-beta(1-40) fibril derived from Alzheimer's disease cortical tissue ; EMD-21501 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ghosh, U.' 1 0000-0001-7818-4792 'Thurber, K.R.' 2 0000-0001-6748-6621 'Tycko, R.' 3 0000-0001-7039-7275 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Molecular structure of a prevalent amyloid-beta fibril polymorph from Alzheimer's disease brain tissue. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2023089118 _citation.pdbx_database_id_PubMed 33431654 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ghosh, U.' 1 0000-0001-7818-4792 primary 'Thurber, K.R.' 2 0000-0001-6748-6621 primary 'Yau, W.M.' 3 ? primary 'Tycko, R.' 4 0000-0001-7039-7275 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 4335.852 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 653-692' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_strand_id 1,2,3,4,5,6 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 40 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? 1 . n A 1 2 ALA 2 2 ? ? ? 1 . n A 1 3 GLU 3 3 ? ? ? 1 . n A 1 4 PHE 4 4 ? ? ? 1 . n A 1 5 ARG 5 5 ? ? ? 1 . n A 1 6 HIS 6 6 ? ? ? 1 . n A 1 7 ASP 7 7 ? ? ? 1 . n A 1 8 SER 8 8 ? ? ? 1 . n A 1 9 GLY 9 9 ? ? ? 1 . n A 1 10 TYR 10 10 10 TYR TYR 1 . n A 1 11 GLU 11 11 11 GLU GLU 1 . n A 1 12 VAL 12 12 12 VAL VAL 1 . n A 1 13 HIS 13 13 13 HIS HIS 1 . n A 1 14 HIS 14 14 14 HIS HIS 1 . n A 1 15 GLN 15 15 15 GLN GLN 1 . n A 1 16 LYS 16 16 16 LYS LYS 1 . n A 1 17 LEU 17 17 17 LEU LEU 1 . n A 1 18 VAL 18 18 18 VAL VAL 1 . n A 1 19 PHE 19 19 19 PHE PHE 1 . n A 1 20 PHE 20 20 20 PHE PHE 1 . n A 1 21 ALA 21 21 21 ALA ALA 1 . n A 1 22 GLU 22 22 22 GLU GLU 1 . n A 1 23 ASP 23 23 23 ASP ASP 1 . n A 1 24 VAL 24 24 24 VAL VAL 1 . n A 1 25 GLY 25 25 25 GLY GLY 1 . n A 1 26 SER 26 26 26 SER SER 1 . n A 1 27 ASN 27 27 27 ASN ASN 1 . n A 1 28 LYS 28 28 28 LYS LYS 1 . n A 1 29 GLY 29 29 29 GLY GLY 1 . n A 1 30 ALA 30 30 30 ALA ALA 1 . n A 1 31 ILE 31 31 31 ILE ILE 1 . n A 1 32 ILE 32 32 32 ILE ILE 1 . n A 1 33 GLY 33 33 33 GLY GLY 1 . n A 1 34 LEU 34 34 34 LEU LEU 1 . n A 1 35 MET 35 35 35 MET MET 1 . n A 1 36 VAL 36 36 36 VAL VAL 1 . n A 1 37 GLY 37 37 37 GLY GLY 1 . n A 1 38 GLY 38 38 38 GLY GLY 1 . n A 1 39 VAL 39 39 39 VAL VAL 1 . n A 1 40 VAL 40 40 40 VAL VAL 1 . n B 1 1 ASP 1 1 ? ? ? 2 . n B 1 2 ALA 2 2 ? ? ? 2 . n B 1 3 GLU 3 3 ? ? ? 2 . n B 1 4 PHE 4 4 ? ? ? 2 . n B 1 5 ARG 5 5 ? ? ? 2 . n B 1 6 HIS 6 6 ? ? ? 2 . n B 1 7 ASP 7 7 ? ? ? 2 . n B 1 8 SER 8 8 ? ? ? 2 . n B 1 9 GLY 9 9 ? ? ? 2 . n B 1 10 TYR 10 10 10 TYR TYR 2 . n B 1 11 GLU 11 11 11 GLU GLU 2 . n B 1 12 VAL 12 12 12 VAL VAL 2 . n B 1 13 HIS 13 13 13 HIS HIS 2 . n B 1 14 HIS 14 14 14 HIS HIS 2 . n B 1 15 GLN 15 15 15 GLN GLN 2 . n B 1 16 LYS 16 16 16 LYS LYS 2 . n B 1 17 LEU 17 17 17 LEU LEU 2 . n B 1 18 VAL 18 18 18 VAL VAL 2 . n B 1 19 PHE 19 19 19 PHE PHE 2 . n B 1 20 PHE 20 20 20 PHE PHE 2 . n B 1 21 ALA 21 21 21 ALA ALA 2 . n B 1 22 GLU 22 22 22 GLU GLU 2 . n B 1 23 ASP 23 23 23 ASP ASP 2 . n B 1 24 VAL 24 24 24 VAL VAL 2 . n B 1 25 GLY 25 25 25 GLY GLY 2 . n B 1 26 SER 26 26 26 SER SER 2 . n B 1 27 ASN 27 27 27 ASN ASN 2 . n B 1 28 LYS 28 28 28 LYS LYS 2 . n B 1 29 GLY 29 29 29 GLY GLY 2 . n B 1 30 ALA 30 30 30 ALA ALA 2 . n B 1 31 ILE 31 31 31 ILE ILE 2 . n B 1 32 ILE 32 32 32 ILE ILE 2 . n B 1 33 GLY 33 33 33 GLY GLY 2 . n B 1 34 LEU 34 34 34 LEU LEU 2 . n B 1 35 MET 35 35 35 MET MET 2 . n B 1 36 VAL 36 36 36 VAL VAL 2 . n B 1 37 GLY 37 37 37 GLY GLY 2 . n B 1 38 GLY 38 38 38 GLY GLY 2 . n B 1 39 VAL 39 39 39 VAL VAL 2 . n B 1 40 VAL 40 40 40 VAL VAL 2 . n C 1 1 ASP 1 1 ? ? ? 3 . n C 1 2 ALA 2 2 ? ? ? 3 . n C 1 3 GLU 3 3 ? ? ? 3 . n C 1 4 PHE 4 4 ? ? ? 3 . n C 1 5 ARG 5 5 ? ? ? 3 . n C 1 6 HIS 6 6 ? ? ? 3 . n C 1 7 ASP 7 7 ? ? ? 3 . n C 1 8 SER 8 8 ? ? ? 3 . n C 1 9 GLY 9 9 ? ? ? 3 . n C 1 10 TYR 10 10 10 TYR TYR 3 . n C 1 11 GLU 11 11 11 GLU GLU 3 . n C 1 12 VAL 12 12 12 VAL VAL 3 . n C 1 13 HIS 13 13 13 HIS HIS 3 . n C 1 14 HIS 14 14 14 HIS HIS 3 . n C 1 15 GLN 15 15 15 GLN GLN 3 . n C 1 16 LYS 16 16 16 LYS LYS 3 . n C 1 17 LEU 17 17 17 LEU LEU 3 . n C 1 18 VAL 18 18 18 VAL VAL 3 . n C 1 19 PHE 19 19 19 PHE PHE 3 . n C 1 20 PHE 20 20 20 PHE PHE 3 . n C 1 21 ALA 21 21 21 ALA ALA 3 . n C 1 22 GLU 22 22 22 GLU GLU 3 . n C 1 23 ASP 23 23 23 ASP ASP 3 . n C 1 24 VAL 24 24 24 VAL VAL 3 . n C 1 25 GLY 25 25 25 GLY GLY 3 . n C 1 26 SER 26 26 26 SER SER 3 . n C 1 27 ASN 27 27 27 ASN ASN 3 . n C 1 28 LYS 28 28 28 LYS LYS 3 . n C 1 29 GLY 29 29 29 GLY GLY 3 . n C 1 30 ALA 30 30 30 ALA ALA 3 . n C 1 31 ILE 31 31 31 ILE ILE 3 . n C 1 32 ILE 32 32 32 ILE ILE 3 . n C 1 33 GLY 33 33 33 GLY GLY 3 . n C 1 34 LEU 34 34 34 LEU LEU 3 . n C 1 35 MET 35 35 35 MET MET 3 . n C 1 36 VAL 36 36 36 VAL VAL 3 . n C 1 37 GLY 37 37 37 GLY GLY 3 . n C 1 38 GLY 38 38 38 GLY GLY 3 . n C 1 39 VAL 39 39 39 VAL VAL 3 . n C 1 40 VAL 40 40 40 VAL VAL 3 . n D 1 1 ASP 1 1 ? ? ? 4 . n D 1 2 ALA 2 2 ? ? ? 4 . n D 1 3 GLU 3 3 ? ? ? 4 . n D 1 4 PHE 4 4 ? ? ? 4 . n D 1 5 ARG 5 5 ? ? ? 4 . n D 1 6 HIS 6 6 ? ? ? 4 . n D 1 7 ASP 7 7 ? ? ? 4 . n D 1 8 SER 8 8 ? ? ? 4 . n D 1 9 GLY 9 9 ? ? ? 4 . n D 1 10 TYR 10 10 10 TYR TYR 4 . n D 1 11 GLU 11 11 11 GLU GLU 4 . n D 1 12 VAL 12 12 12 VAL VAL 4 . n D 1 13 HIS 13 13 13 HIS HIS 4 . n D 1 14 HIS 14 14 14 HIS HIS 4 . n D 1 15 GLN 15 15 15 GLN GLN 4 . n D 1 16 LYS 16 16 16 LYS LYS 4 . n D 1 17 LEU 17 17 17 LEU LEU 4 . n D 1 18 VAL 18 18 18 VAL VAL 4 . n D 1 19 PHE 19 19 19 PHE PHE 4 . n D 1 20 PHE 20 20 20 PHE PHE 4 . n D 1 21 ALA 21 21 21 ALA ALA 4 . n D 1 22 GLU 22 22 22 GLU GLU 4 . n D 1 23 ASP 23 23 23 ASP ASP 4 . n D 1 24 VAL 24 24 24 VAL VAL 4 . n D 1 25 GLY 25 25 25 GLY GLY 4 . n D 1 26 SER 26 26 26 SER SER 4 . n D 1 27 ASN 27 27 27 ASN ASN 4 . n D 1 28 LYS 28 28 28 LYS LYS 4 . n D 1 29 GLY 29 29 29 GLY GLY 4 . n D 1 30 ALA 30 30 30 ALA ALA 4 . n D 1 31 ILE 31 31 31 ILE ILE 4 . n D 1 32 ILE 32 32 32 ILE ILE 4 . n D 1 33 GLY 33 33 33 GLY GLY 4 . n D 1 34 LEU 34 34 34 LEU LEU 4 . n D 1 35 MET 35 35 35 MET MET 4 . n D 1 36 VAL 36 36 36 VAL VAL 4 . n D 1 37 GLY 37 37 37 GLY GLY 4 . n D 1 38 GLY 38 38 38 GLY GLY 4 . n D 1 39 VAL 39 39 39 VAL VAL 4 . n D 1 40 VAL 40 40 40 VAL VAL 4 . n E 1 1 ASP 1 1 ? ? ? 5 . n E 1 2 ALA 2 2 ? ? ? 5 . n E 1 3 GLU 3 3 ? ? ? 5 . n E 1 4 PHE 4 4 ? ? ? 5 . n E 1 5 ARG 5 5 ? ? ? 5 . n E 1 6 HIS 6 6 ? ? ? 5 . n E 1 7 ASP 7 7 ? ? ? 5 . n E 1 8 SER 8 8 ? ? ? 5 . n E 1 9 GLY 9 9 ? ? ? 5 . n E 1 10 TYR 10 10 10 TYR TYR 5 . n E 1 11 GLU 11 11 11 GLU GLU 5 . n E 1 12 VAL 12 12 12 VAL VAL 5 . n E 1 13 HIS 13 13 13 HIS HIS 5 . n E 1 14 HIS 14 14 14 HIS HIS 5 . n E 1 15 GLN 15 15 15 GLN GLN 5 . n E 1 16 LYS 16 16 16 LYS LYS 5 . n E 1 17 LEU 17 17 17 LEU LEU 5 . n E 1 18 VAL 18 18 18 VAL VAL 5 . n E 1 19 PHE 19 19 19 PHE PHE 5 . n E 1 20 PHE 20 20 20 PHE PHE 5 . n E 1 21 ALA 21 21 21 ALA ALA 5 . n E 1 22 GLU 22 22 22 GLU GLU 5 . n E 1 23 ASP 23 23 23 ASP ASP 5 . n E 1 24 VAL 24 24 24 VAL VAL 5 . n E 1 25 GLY 25 25 25 GLY GLY 5 . n E 1 26 SER 26 26 26 SER SER 5 . n E 1 27 ASN 27 27 27 ASN ASN 5 . n E 1 28 LYS 28 28 28 LYS LYS 5 . n E 1 29 GLY 29 29 29 GLY GLY 5 . n E 1 30 ALA 30 30 30 ALA ALA 5 . n E 1 31 ILE 31 31 31 ILE ILE 5 . n E 1 32 ILE 32 32 32 ILE ILE 5 . n E 1 33 GLY 33 33 33 GLY GLY 5 . n E 1 34 LEU 34 34 34 LEU LEU 5 . n E 1 35 MET 35 35 35 MET MET 5 . n E 1 36 VAL 36 36 36 VAL VAL 5 . n E 1 37 GLY 37 37 37 GLY GLY 5 . n E 1 38 GLY 38 38 38 GLY GLY 5 . n E 1 39 VAL 39 39 39 VAL VAL 5 . n E 1 40 VAL 40 40 40 VAL VAL 5 . n F 1 1 ASP 1 1 ? ? ? 6 . n F 1 2 ALA 2 2 ? ? ? 6 . n F 1 3 GLU 3 3 ? ? ? 6 . n F 1 4 PHE 4 4 ? ? ? 6 . n F 1 5 ARG 5 5 ? ? ? 6 . n F 1 6 HIS 6 6 ? ? ? 6 . n F 1 7 ASP 7 7 ? ? ? 6 . n F 1 8 SER 8 8 ? ? ? 6 . n F 1 9 GLY 9 9 ? ? ? 6 . n F 1 10 TYR 10 10 10 TYR TYR 6 . n F 1 11 GLU 11 11 11 GLU GLU 6 . n F 1 12 VAL 12 12 12 VAL VAL 6 . n F 1 13 HIS 13 13 13 HIS HIS 6 . n F 1 14 HIS 14 14 14 HIS HIS 6 . n F 1 15 GLN 15 15 15 GLN GLN 6 . n F 1 16 LYS 16 16 16 LYS LYS 6 . n F 1 17 LEU 17 17 17 LEU LEU 6 . n F 1 18 VAL 18 18 18 VAL VAL 6 . n F 1 19 PHE 19 19 19 PHE PHE 6 . n F 1 20 PHE 20 20 20 PHE PHE 6 . n F 1 21 ALA 21 21 21 ALA ALA 6 . n F 1 22 GLU 22 22 22 GLU GLU 6 . n F 1 23 ASP 23 23 23 ASP ASP 6 . n F 1 24 VAL 24 24 24 VAL VAL 6 . n F 1 25 GLY 25 25 25 GLY GLY 6 . n F 1 26 SER 26 26 26 SER SER 6 . n F 1 27 ASN 27 27 27 ASN ASN 6 . n F 1 28 LYS 28 28 28 LYS LYS 6 . n F 1 29 GLY 29 29 29 GLY GLY 6 . n F 1 30 ALA 30 30 30 ALA ALA 6 . n F 1 31 ILE 31 31 31 ILE ILE 6 . n F 1 32 ILE 32 32 32 ILE ILE 6 . n F 1 33 GLY 33 33 33 GLY GLY 6 . n F 1 34 LEU 34 34 34 LEU LEU 6 . n F 1 35 MET 35 35 35 MET MET 6 . n F 1 36 VAL 36 36 36 VAL VAL 6 . n F 1 37 GLY 37 37 37 GLY GLY 6 . n F 1 38 GLY 38 38 38 GLY GLY 6 . n F 1 39 VAL 39 39 39 VAL VAL 6 . n F 1 40 VAL 40 40 40 VAL VAL 6 . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 6W0O ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? ? 6W0O ? ? 'SOLID-STATE NMR' ? # _struct.entry_id 6W0O _struct.title ;Amyloid-beta(1-40) fibril derived from Alzheimer's disease cortical tissue ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6W0O _struct_keywords.text ;amyloid-beta, Alzheimer's disease, PROTEIN FIBRIL ; _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform P05067-8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _struct_ref.pdbx_align_begin 653 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6W0O 1 1 ? 40 ? P05067 653 ? 692 ? 1 40 2 1 6W0O 2 1 ? 40 ? P05067 653 ? 692 ? 1 40 3 1 6W0O 3 1 ? 40 ? P05067 653 ? 692 ? 1 40 4 1 6W0O 4 1 ? 40 ? P05067 653 ? 692 ? 1 40 5 1 6W0O 5 1 ? 40 ? P05067 653 ? 692 ? 1 40 6 1 6W0O 6 1 ? 40 ? P05067 653 ? 692 ? 1 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13490 ? 1 MORE -83 ? 1 'SSA (A^2)' 10060 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'negative-stain TEM, unstained TEM, atomic force microscopy, cryoEM, solid state NMR, etc.' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 15 ? VAL A 24 ? GLN 1 15 VAL 1 24 AA1 2 GLN B 15 ? VAL B 24 ? GLN 2 15 VAL 2 24 AA1 3 GLN C 15 ? VAL C 24 ? GLN 3 15 VAL 3 24 AA2 1 ALA A 30 ? ILE A 32 ? ALA 1 30 ILE 1 32 AA2 2 ALA B 30 ? ILE B 32 ? ALA 2 30 ILE 2 32 AA2 3 ALA C 30 ? ILE C 32 ? ALA 3 30 ILE 3 32 AA3 1 MET A 35 ? VAL A 39 ? MET 1 35 VAL 1 39 AA3 2 MET B 35 ? VAL B 39 ? MET 2 35 VAL 2 39 AA3 3 MET C 35 ? VAL C 39 ? MET 3 35 VAL 3 39 AA4 1 VAL D 12 ? VAL D 24 ? VAL 4 12 VAL 4 24 AA4 2 VAL E 12 ? VAL E 24 ? VAL 5 12 VAL 5 24 AA4 3 VAL F 12 ? VAL F 24 ? VAL 6 12 VAL 6 24 AA5 1 ALA D 30 ? VAL D 36 ? ALA 4 30 VAL 4 36 AA5 2 ALA E 30 ? VAL E 36 ? ALA 5 30 VAL 5 36 AA5 3 ALA F 30 ? VAL F 36 ? ALA 6 30 VAL 6 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 18 ? N VAL 1 18 O PHE B 19 ? O PHE 2 19 AA1 2 3 N VAL B 18 ? N VAL 2 18 O PHE C 19 ? O PHE 3 19 AA2 1 2 N ILE A 32 ? N ILE 1 32 O ILE B 31 ? O ILE 2 31 AA2 2 3 N ILE B 32 ? N ILE 2 32 O ILE C 31 ? O ILE 3 31 AA3 1 2 N MET A 35 ? N MET 1 35 O VAL B 36 ? O VAL 2 36 AA3 2 3 N MET B 35 ? N MET 2 35 O VAL C 36 ? O VAL 3 36 AA4 1 2 N VAL D 18 ? N VAL 4 18 O PHE E 19 ? O PHE 5 19 AA4 2 3 N VAL E 18 ? N VAL 5 18 O PHE F 19 ? O PHE 6 19 AA5 1 2 N ILE D 32 ? N ILE 4 32 O ILE E 31 ? O ILE 5 31 AA5 2 3 N ILE E 32 ? N ILE 5 32 O ILE F 31 ? O ILE 6 31 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL 1 12 ? ? -172.15 121.58 2 1 HIS 1 14 ? ? 70.77 78.00 3 1 ASP 1 23 ? ? 61.16 65.88 4 1 VAL 2 12 ? ? -171.90 121.30 5 1 HIS 2 14 ? ? 70.88 78.17 6 1 ASP 2 23 ? ? 61.09 65.93 7 1 VAL 3 12 ? ? -172.53 121.17 8 1 HIS 3 14 ? ? 70.99 77.93 9 1 ASP 3 23 ? ? 61.02 65.99 10 1 ASP 4 23 ? ? 60.53 63.98 11 1 ASP 5 23 ? ? 60.61 63.93 12 1 ASP 6 23 ? ? 60.39 63.91 13 2 VAL 1 12 ? ? 59.13 72.75 14 2 ASP 1 23 ? ? 60.71 65.71 15 2 VAL 2 12 ? ? 59.75 72.59 16 2 ASP 2 23 ? ? 60.60 65.87 17 2 VAL 3 12 ? ? 59.12 72.63 18 2 ASP 3 23 ? ? 60.61 65.59 19 2 ASP 4 23 ? ? 61.24 65.89 20 2 ASP 5 23 ? ? 61.25 65.95 21 2 ASP 6 23 ? ? 61.22 65.67 22 3 VAL 1 12 ? ? 62.58 76.20 23 3 ASP 1 23 ? ? 60.10 68.51 24 3 VAL 2 12 ? ? 62.75 76.21 25 3 ASP 2 23 ? ? 60.12 68.72 26 3 VAL 3 12 ? ? 62.48 76.16 27 3 ASP 3 23 ? ? 60.09 68.45 28 3 ASP 4 23 ? ? 62.72 79.83 29 3 ASP 5 23 ? ? 63.00 79.91 30 3 ASP 6 23 ? ? 63.33 78.69 31 4 HIS 1 13 ? ? -106.66 -61.83 32 4 HIS 1 14 ? ? 50.53 77.22 33 4 HIS 2 13 ? ? -106.39 -61.80 34 4 HIS 2 14 ? ? 50.54 77.64 35 4 ASP 2 23 ? ? 60.12 63.65 36 4 HIS 3 13 ? ? -107.00 -61.49 37 4 HIS 3 14 ? ? 50.36 76.77 38 4 VAL 4 12 ? ? 44.20 83.63 39 4 ASP 4 23 ? ? 60.37 70.06 40 4 VAL 5 12 ? ? 44.43 83.46 41 4 ASP 5 23 ? ? 60.54 70.12 42 4 VAL 6 12 ? ? 44.47 83.11 43 4 ASP 6 23 ? ? 60.09 70.20 44 5 ASP 1 23 ? ? 60.63 64.48 45 5 ASP 2 23 ? ? 60.74 64.70 46 5 ASP 3 23 ? ? 60.40 64.63 47 5 ASP 4 23 ? ? 60.94 65.25 48 5 ASP 5 23 ? ? 61.02 65.29 49 5 ASP 6 23 ? ? 60.91 65.08 50 6 ASP 4 23 ? ? 61.36 69.20 51 6 ASP 5 23 ? ? 61.29 69.16 52 6 ASP 6 23 ? ? 61.32 69.21 53 7 VAL 1 12 ? ? 63.61 67.55 54 7 ASP 1 23 ? ? 60.58 65.43 55 7 VAL 2 12 ? ? 63.77 67.47 56 7 ASP 2 23 ? ? 60.57 65.53 57 7 VAL 3 12 ? ? 63.38 67.60 58 7 ASP 3 23 ? ? 60.57 65.05 59 7 HIS 4 13 ? ? 47.96 89.28 60 7 ASP 4 23 ? ? 61.14 68.52 61 7 HIS 5 13 ? ? 48.27 89.19 62 7 ASP 5 23 ? ? 61.04 68.71 63 7 HIS 6 13 ? ? 47.84 89.22 64 7 ASP 6 23 ? ? 61.20 68.20 65 8 ASP 1 23 ? ? 61.14 68.40 66 8 ASP 2 23 ? ? 61.33 68.44 67 8 ASP 3 23 ? ? 60.96 68.28 68 8 ASP 4 23 ? ? 62.91 65.76 69 8 ASP 5 23 ? ? 62.81 66.06 70 8 ASP 6 23 ? ? 62.89 65.70 71 9 VAL 1 12 ? ? 44.67 89.78 72 9 HIS 1 14 ? ? -129.79 -53.26 73 9 ASP 1 23 ? ? 60.94 66.31 74 9 VAL 2 12 ? ? 44.60 89.66 75 9 HIS 2 14 ? ? -129.67 -53.81 76 9 ASP 2 23 ? ? 61.03 66.29 77 9 VAL 3 12 ? ? 45.11 89.76 78 9 HIS 3 14 ? ? -129.86 -52.91 79 9 ASP 3 23 ? ? 60.67 66.37 80 9 ASP 4 23 ? ? 61.62 66.59 81 9 ASP 5 23 ? ? 61.58 66.63 82 9 ASP 6 23 ? ? 61.55 66.42 83 10 VAL 1 12 ? ? 62.12 72.85 84 10 ASP 1 23 ? ? 60.88 64.27 85 10 VAL 2 12 ? ? 62.35 72.92 86 10 ASP 2 23 ? ? 60.97 64.45 87 10 VAL 3 12 ? ? 62.18 72.81 88 10 ASP 3 23 ? ? 60.88 64.24 89 10 VAL 4 12 ? ? 64.78 71.50 90 10 ASP 4 23 ? ? 61.37 70.48 91 10 VAL 5 12 ? ? 65.06 71.50 92 10 ASP 5 23 ? ? 61.34 70.63 93 10 VAL 6 12 ? ? 64.60 71.45 94 10 ASP 6 23 ? ? 61.51 70.42 # _pdbx_helical_symmetry.entry_id 6W0O _pdbx_helical_symmetry.number_of_operations 6 _pdbx_helical_symmetry.rotation_per_n_subunits 179.66 _pdbx_helical_symmetry.rise_per_n_subunits 2.45 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_nmr_ensemble.entry_id 6W0O _pdbx_nmr_ensemble.conformers_calculated_total_number 60 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6W0O _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '100 uM U-15N,13C amyloid-beta(1-40), phosphate buffer' _pdbx_nmr_sample_details.solvent_system 'phosphate buffer' _pdbx_nmr_sample_details.label 'U-labeled fibrils' _pdbx_nmr_sample_details.type 'fibrous protein' _pdbx_nmr_sample_details.details 'lyophilized, rehydrated in MAS rotor, 100 uM concentration prior to pelleting' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'amyloid-beta(1-40)' _pdbx_nmr_exptl_sample.concentration 100 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling U-15N,13C # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 297 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details 'pelleted, lyophilized, rehydrated in MAS rotor' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.05 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D NCACX' 1 anisotropic 2 1 1 '3D NCOCX' 1 anisotropic 3 1 1 '3D CANCX' 1 anisotropic 4 1 1 '3D CONCX' 1 anisotropic 5 1 1 '2D 13C-13C' 1 anisotropic # _pdbx_nmr_refine.entry_id 6W0O _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'phi/psi from TalosN & EM density used as restraints' _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 2 'chemical shift assignment' Sparky ? Goddard 3 refinement 'X-PLOR NIH' 2.53 'Schwieters, Kuszewski, Tjandra and Clore' # _em_3d_fitting.entry_id 6W0O _em_3d_fitting.id 1 _em_3d_fitting.details ;Xplor-NIH was used to combine EM density with phi/psi restraints from NMR chemical shifts (from Talos-N Version 4.21 Rev 2016.343.11.31). ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6W0O _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ;A modified version of RELION 3.0-beta was used for the reconstruction. The modified version allowed local averaging of the rotation angle. Final reconstruction used 2-fold screw symmetry. ; _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 14775 _em_3d_reconstruction.resolution 2.77 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '10 mM phosphate buffer with 0.01% NaN3 to avoid microbial contamination. Buffers were filtered to avoid contamination.' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ;Fibrils produced by seeded growth using amyloid-beta in brain extract as the source of seeds. CryoEM and solid state NMR measurements were performed on second-generation seeded fibrils. ; _em_entity_assembly.name 'amyloid-beta(1-40) fibrils derived from human AD brain' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6W0O _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 50 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-50 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6W0O _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details 'Preliminary grid screening was done manually in FEI T12.' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max -3000 _em_imaging.nominal_defocus_min -500 _em_imaging.nominal_magnification 130000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt 6 _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'The grids were checked in microscope prior to use.' _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 293 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'The grids were preblotted for 10 seconds and blotted for 6 seconds before plunging.' _em_vitrification.humidity 90 _em_vitrification.instrument 'LEICA PLUNGER' _em_vitrification.entry_id 6W0O _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6W0O _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 1 ASP 1 ? A ASP 1 2 1 Y 1 1 ALA 2 ? A ALA 2 3 1 Y 1 1 GLU 3 ? A GLU 3 4 1 Y 1 1 PHE 4 ? A PHE 4 5 1 Y 1 1 ARG 5 ? A ARG 5 6 1 Y 1 1 HIS 6 ? A HIS 6 7 1 Y 1 1 ASP 7 ? A ASP 7 8 1 Y 1 1 SER 8 ? A SER 8 9 1 Y 1 1 GLY 9 ? A GLY 9 10 1 Y 1 2 ASP 1 ? B ASP 1 11 1 Y 1 2 ALA 2 ? B ALA 2 12 1 Y 1 2 GLU 3 ? B GLU 3 13 1 Y 1 2 PHE 4 ? B PHE 4 14 1 Y 1 2 ARG 5 ? B ARG 5 15 1 Y 1 2 HIS 6 ? B HIS 6 16 1 Y 1 2 ASP 7 ? B ASP 7 17 1 Y 1 2 SER 8 ? B SER 8 18 1 Y 1 2 GLY 9 ? B GLY 9 19 1 Y 1 3 ASP 1 ? C ASP 1 20 1 Y 1 3 ALA 2 ? C ALA 2 21 1 Y 1 3 GLU 3 ? C GLU 3 22 1 Y 1 3 PHE 4 ? C PHE 4 23 1 Y 1 3 ARG 5 ? C ARG 5 24 1 Y 1 3 HIS 6 ? C HIS 6 25 1 Y 1 3 ASP 7 ? C ASP 7 26 1 Y 1 3 SER 8 ? C SER 8 27 1 Y 1 3 GLY 9 ? C GLY 9 28 1 Y 1 4 ASP 1 ? D ASP 1 29 1 Y 1 4 ALA 2 ? D ALA 2 30 1 Y 1 4 GLU 3 ? D GLU 3 31 1 Y 1 4 PHE 4 ? D PHE 4 32 1 Y 1 4 ARG 5 ? D ARG 5 33 1 Y 1 4 HIS 6 ? D HIS 6 34 1 Y 1 4 ASP 7 ? D ASP 7 35 1 Y 1 4 SER 8 ? D SER 8 36 1 Y 1 4 GLY 9 ? D GLY 9 37 1 Y 1 5 ASP 1 ? E ASP 1 38 1 Y 1 5 ALA 2 ? E ALA 2 39 1 Y 1 5 GLU 3 ? E GLU 3 40 1 Y 1 5 PHE 4 ? E PHE 4 41 1 Y 1 5 ARG 5 ? E ARG 5 42 1 Y 1 5 HIS 6 ? E HIS 6 43 1 Y 1 5 ASP 7 ? E ASP 7 44 1 Y 1 5 SER 8 ? E SER 8 45 1 Y 1 5 GLY 9 ? E GLY 9 46 1 Y 1 6 ASP 1 ? F ASP 1 47 1 Y 1 6 ALA 2 ? F ALA 2 48 1 Y 1 6 GLU 3 ? F GLU 3 49 1 Y 1 6 PHE 4 ? F PHE 4 50 1 Y 1 6 ARG 5 ? F ARG 5 51 1 Y 1 6 HIS 6 ? F HIS 6 52 1 Y 1 6 ASP 7 ? F ASP 7 53 1 Y 1 6 SER 8 ? F SER 8 54 1 Y 1 6 GLY 9 ? F GLY 9 55 2 Y 1 1 ASP 1 ? A ASP 1 56 2 Y 1 1 ALA 2 ? A ALA 2 57 2 Y 1 1 GLU 3 ? A GLU 3 58 2 Y 1 1 PHE 4 ? A PHE 4 59 2 Y 1 1 ARG 5 ? A ARG 5 60 2 Y 1 1 HIS 6 ? A HIS 6 61 2 Y 1 1 ASP 7 ? A ASP 7 62 2 Y 1 1 SER 8 ? A SER 8 63 2 Y 1 1 GLY 9 ? A GLY 9 64 2 Y 1 2 ASP 1 ? B ASP 1 65 2 Y 1 2 ALA 2 ? B ALA 2 66 2 Y 1 2 GLU 3 ? B GLU 3 67 2 Y 1 2 PHE 4 ? B PHE 4 68 2 Y 1 2 ARG 5 ? B ARG 5 69 2 Y 1 2 HIS 6 ? B HIS 6 70 2 Y 1 2 ASP 7 ? B ASP 7 71 2 Y 1 2 SER 8 ? B SER 8 72 2 Y 1 2 GLY 9 ? B GLY 9 73 2 Y 1 3 ASP 1 ? C ASP 1 74 2 Y 1 3 ALA 2 ? C ALA 2 75 2 Y 1 3 GLU 3 ? C GLU 3 76 2 Y 1 3 PHE 4 ? C PHE 4 77 2 Y 1 3 ARG 5 ? C ARG 5 78 2 Y 1 3 HIS 6 ? C HIS 6 79 2 Y 1 3 ASP 7 ? C ASP 7 80 2 Y 1 3 SER 8 ? C SER 8 81 2 Y 1 3 GLY 9 ? C GLY 9 82 2 Y 1 4 ASP 1 ? D ASP 1 83 2 Y 1 4 ALA 2 ? D ALA 2 84 2 Y 1 4 GLU 3 ? D GLU 3 85 2 Y 1 4 PHE 4 ? D PHE 4 86 2 Y 1 4 ARG 5 ? D ARG 5 87 2 Y 1 4 HIS 6 ? D HIS 6 88 2 Y 1 4 ASP 7 ? D ASP 7 89 2 Y 1 4 SER 8 ? D SER 8 90 2 Y 1 4 GLY 9 ? D GLY 9 91 2 Y 1 5 ASP 1 ? E ASP 1 92 2 Y 1 5 ALA 2 ? E ALA 2 93 2 Y 1 5 GLU 3 ? E GLU 3 94 2 Y 1 5 PHE 4 ? E PHE 4 95 2 Y 1 5 ARG 5 ? E ARG 5 96 2 Y 1 5 HIS 6 ? E HIS 6 97 2 Y 1 5 ASP 7 ? E ASP 7 98 2 Y 1 5 SER 8 ? E SER 8 99 2 Y 1 5 GLY 9 ? E GLY 9 100 2 Y 1 6 ASP 1 ? F ASP 1 101 2 Y 1 6 ALA 2 ? F ALA 2 102 2 Y 1 6 GLU 3 ? F GLU 3 103 2 Y 1 6 PHE 4 ? F PHE 4 104 2 Y 1 6 ARG 5 ? F ARG 5 105 2 Y 1 6 HIS 6 ? F HIS 6 106 2 Y 1 6 ASP 7 ? F ASP 7 107 2 Y 1 6 SER 8 ? F SER 8 108 2 Y 1 6 GLY 9 ? F GLY 9 109 3 Y 1 1 ASP 1 ? A ASP 1 110 3 Y 1 1 ALA 2 ? A ALA 2 111 3 Y 1 1 GLU 3 ? A GLU 3 112 3 Y 1 1 PHE 4 ? A PHE 4 113 3 Y 1 1 ARG 5 ? A ARG 5 114 3 Y 1 1 HIS 6 ? A HIS 6 115 3 Y 1 1 ASP 7 ? A ASP 7 116 3 Y 1 1 SER 8 ? A SER 8 117 3 Y 1 1 GLY 9 ? A GLY 9 118 3 Y 1 2 ASP 1 ? B ASP 1 119 3 Y 1 2 ALA 2 ? B ALA 2 120 3 Y 1 2 GLU 3 ? B GLU 3 121 3 Y 1 2 PHE 4 ? B PHE 4 122 3 Y 1 2 ARG 5 ? B ARG 5 123 3 Y 1 2 HIS 6 ? B HIS 6 124 3 Y 1 2 ASP 7 ? B ASP 7 125 3 Y 1 2 SER 8 ? B SER 8 126 3 Y 1 2 GLY 9 ? B GLY 9 127 3 Y 1 3 ASP 1 ? C ASP 1 128 3 Y 1 3 ALA 2 ? C ALA 2 129 3 Y 1 3 GLU 3 ? C GLU 3 130 3 Y 1 3 PHE 4 ? C PHE 4 131 3 Y 1 3 ARG 5 ? C ARG 5 132 3 Y 1 3 HIS 6 ? C HIS 6 133 3 Y 1 3 ASP 7 ? C ASP 7 134 3 Y 1 3 SER 8 ? C SER 8 135 3 Y 1 3 GLY 9 ? C GLY 9 136 3 Y 1 4 ASP 1 ? D ASP 1 137 3 Y 1 4 ALA 2 ? D ALA 2 138 3 Y 1 4 GLU 3 ? D GLU 3 139 3 Y 1 4 PHE 4 ? D PHE 4 140 3 Y 1 4 ARG 5 ? D ARG 5 141 3 Y 1 4 HIS 6 ? D HIS 6 142 3 Y 1 4 ASP 7 ? D ASP 7 143 3 Y 1 4 SER 8 ? D SER 8 144 3 Y 1 4 GLY 9 ? D GLY 9 145 3 Y 1 5 ASP 1 ? E ASP 1 146 3 Y 1 5 ALA 2 ? E ALA 2 147 3 Y 1 5 GLU 3 ? E GLU 3 148 3 Y 1 5 PHE 4 ? E PHE 4 149 3 Y 1 5 ARG 5 ? E ARG 5 150 3 Y 1 5 HIS 6 ? E HIS 6 151 3 Y 1 5 ASP 7 ? E ASP 7 152 3 Y 1 5 SER 8 ? E SER 8 153 3 Y 1 5 GLY 9 ? E GLY 9 154 3 Y 1 6 ASP 1 ? F ASP 1 155 3 Y 1 6 ALA 2 ? F ALA 2 156 3 Y 1 6 GLU 3 ? F GLU 3 157 3 Y 1 6 PHE 4 ? F PHE 4 158 3 Y 1 6 ARG 5 ? F ARG 5 159 3 Y 1 6 HIS 6 ? F HIS 6 160 3 Y 1 6 ASP 7 ? F ASP 7 161 3 Y 1 6 SER 8 ? F SER 8 162 3 Y 1 6 GLY 9 ? F GLY 9 163 4 Y 1 1 ASP 1 ? A ASP 1 164 4 Y 1 1 ALA 2 ? A ALA 2 165 4 Y 1 1 GLU 3 ? A GLU 3 166 4 Y 1 1 PHE 4 ? A PHE 4 167 4 Y 1 1 ARG 5 ? A ARG 5 168 4 Y 1 1 HIS 6 ? A HIS 6 169 4 Y 1 1 ASP 7 ? A ASP 7 170 4 Y 1 1 SER 8 ? A SER 8 171 4 Y 1 1 GLY 9 ? A GLY 9 172 4 Y 1 2 ASP 1 ? B ASP 1 173 4 Y 1 2 ALA 2 ? B ALA 2 174 4 Y 1 2 GLU 3 ? B GLU 3 175 4 Y 1 2 PHE 4 ? B PHE 4 176 4 Y 1 2 ARG 5 ? B ARG 5 177 4 Y 1 2 HIS 6 ? B HIS 6 178 4 Y 1 2 ASP 7 ? B ASP 7 179 4 Y 1 2 SER 8 ? B SER 8 180 4 Y 1 2 GLY 9 ? B GLY 9 181 4 Y 1 3 ASP 1 ? C ASP 1 182 4 Y 1 3 ALA 2 ? C ALA 2 183 4 Y 1 3 GLU 3 ? C GLU 3 184 4 Y 1 3 PHE 4 ? C PHE 4 185 4 Y 1 3 ARG 5 ? C ARG 5 186 4 Y 1 3 HIS 6 ? C HIS 6 187 4 Y 1 3 ASP 7 ? C ASP 7 188 4 Y 1 3 SER 8 ? C SER 8 189 4 Y 1 3 GLY 9 ? C GLY 9 190 4 Y 1 4 ASP 1 ? D ASP 1 191 4 Y 1 4 ALA 2 ? D ALA 2 192 4 Y 1 4 GLU 3 ? D GLU 3 193 4 Y 1 4 PHE 4 ? D PHE 4 194 4 Y 1 4 ARG 5 ? D ARG 5 195 4 Y 1 4 HIS 6 ? D HIS 6 196 4 Y 1 4 ASP 7 ? D ASP 7 197 4 Y 1 4 SER 8 ? D SER 8 198 4 Y 1 4 GLY 9 ? D GLY 9 199 4 Y 1 5 ASP 1 ? E ASP 1 200 4 Y 1 5 ALA 2 ? E ALA 2 201 4 Y 1 5 GLU 3 ? E GLU 3 202 4 Y 1 5 PHE 4 ? E PHE 4 203 4 Y 1 5 ARG 5 ? E ARG 5 204 4 Y 1 5 HIS 6 ? E HIS 6 205 4 Y 1 5 ASP 7 ? E ASP 7 206 4 Y 1 5 SER 8 ? E SER 8 207 4 Y 1 5 GLY 9 ? E GLY 9 208 4 Y 1 6 ASP 1 ? F ASP 1 209 4 Y 1 6 ALA 2 ? F ALA 2 210 4 Y 1 6 GLU 3 ? F GLU 3 211 4 Y 1 6 PHE 4 ? F PHE 4 212 4 Y 1 6 ARG 5 ? F ARG 5 213 4 Y 1 6 HIS 6 ? F HIS 6 214 4 Y 1 6 ASP 7 ? F ASP 7 215 4 Y 1 6 SER 8 ? F SER 8 216 4 Y 1 6 GLY 9 ? F GLY 9 217 5 Y 1 1 ASP 1 ? A ASP 1 218 5 Y 1 1 ALA 2 ? A ALA 2 219 5 Y 1 1 GLU 3 ? A GLU 3 220 5 Y 1 1 PHE 4 ? A PHE 4 221 5 Y 1 1 ARG 5 ? A ARG 5 222 5 Y 1 1 HIS 6 ? A HIS 6 223 5 Y 1 1 ASP 7 ? A ASP 7 224 5 Y 1 1 SER 8 ? A SER 8 225 5 Y 1 1 GLY 9 ? A GLY 9 226 5 Y 1 2 ASP 1 ? B ASP 1 227 5 Y 1 2 ALA 2 ? B ALA 2 228 5 Y 1 2 GLU 3 ? B GLU 3 229 5 Y 1 2 PHE 4 ? B PHE 4 230 5 Y 1 2 ARG 5 ? B ARG 5 231 5 Y 1 2 HIS 6 ? B HIS 6 232 5 Y 1 2 ASP 7 ? B ASP 7 233 5 Y 1 2 SER 8 ? B SER 8 234 5 Y 1 2 GLY 9 ? B GLY 9 235 5 Y 1 3 ASP 1 ? C ASP 1 236 5 Y 1 3 ALA 2 ? C ALA 2 237 5 Y 1 3 GLU 3 ? C GLU 3 238 5 Y 1 3 PHE 4 ? C PHE 4 239 5 Y 1 3 ARG 5 ? C ARG 5 240 5 Y 1 3 HIS 6 ? C HIS 6 241 5 Y 1 3 ASP 7 ? C ASP 7 242 5 Y 1 3 SER 8 ? C SER 8 243 5 Y 1 3 GLY 9 ? C GLY 9 244 5 Y 1 4 ASP 1 ? D ASP 1 245 5 Y 1 4 ALA 2 ? D ALA 2 246 5 Y 1 4 GLU 3 ? D GLU 3 247 5 Y 1 4 PHE 4 ? D PHE 4 248 5 Y 1 4 ARG 5 ? D ARG 5 249 5 Y 1 4 HIS 6 ? D HIS 6 250 5 Y 1 4 ASP 7 ? D ASP 7 251 5 Y 1 4 SER 8 ? D SER 8 252 5 Y 1 4 GLY 9 ? D GLY 9 253 5 Y 1 5 ASP 1 ? E ASP 1 254 5 Y 1 5 ALA 2 ? E ALA 2 255 5 Y 1 5 GLU 3 ? E GLU 3 256 5 Y 1 5 PHE 4 ? E PHE 4 257 5 Y 1 5 ARG 5 ? E ARG 5 258 5 Y 1 5 HIS 6 ? E HIS 6 259 5 Y 1 5 ASP 7 ? E ASP 7 260 5 Y 1 5 SER 8 ? E SER 8 261 5 Y 1 5 GLY 9 ? E GLY 9 262 5 Y 1 6 ASP 1 ? F ASP 1 263 5 Y 1 6 ALA 2 ? F ALA 2 264 5 Y 1 6 GLU 3 ? F GLU 3 265 5 Y 1 6 PHE 4 ? F PHE 4 266 5 Y 1 6 ARG 5 ? F ARG 5 267 5 Y 1 6 HIS 6 ? F HIS 6 268 5 Y 1 6 ASP 7 ? F ASP 7 269 5 Y 1 6 SER 8 ? F SER 8 270 5 Y 1 6 GLY 9 ? F GLY 9 271 6 Y 1 1 ASP 1 ? A ASP 1 272 6 Y 1 1 ALA 2 ? A ALA 2 273 6 Y 1 1 GLU 3 ? A GLU 3 274 6 Y 1 1 PHE 4 ? A PHE 4 275 6 Y 1 1 ARG 5 ? A ARG 5 276 6 Y 1 1 HIS 6 ? A HIS 6 277 6 Y 1 1 ASP 7 ? A ASP 7 278 6 Y 1 1 SER 8 ? A SER 8 279 6 Y 1 1 GLY 9 ? A GLY 9 280 6 Y 1 2 ASP 1 ? B ASP 1 281 6 Y 1 2 ALA 2 ? B ALA 2 282 6 Y 1 2 GLU 3 ? B GLU 3 283 6 Y 1 2 PHE 4 ? B PHE 4 284 6 Y 1 2 ARG 5 ? B ARG 5 285 6 Y 1 2 HIS 6 ? B HIS 6 286 6 Y 1 2 ASP 7 ? B ASP 7 287 6 Y 1 2 SER 8 ? B SER 8 288 6 Y 1 2 GLY 9 ? B GLY 9 289 6 Y 1 3 ASP 1 ? C ASP 1 290 6 Y 1 3 ALA 2 ? C ALA 2 291 6 Y 1 3 GLU 3 ? C GLU 3 292 6 Y 1 3 PHE 4 ? C PHE 4 293 6 Y 1 3 ARG 5 ? C ARG 5 294 6 Y 1 3 HIS 6 ? C HIS 6 295 6 Y 1 3 ASP 7 ? C ASP 7 296 6 Y 1 3 SER 8 ? C SER 8 297 6 Y 1 3 GLY 9 ? C GLY 9 298 6 Y 1 4 ASP 1 ? D ASP 1 299 6 Y 1 4 ALA 2 ? D ALA 2 300 6 Y 1 4 GLU 3 ? D GLU 3 301 6 Y 1 4 PHE 4 ? D PHE 4 302 6 Y 1 4 ARG 5 ? D ARG 5 303 6 Y 1 4 HIS 6 ? D HIS 6 304 6 Y 1 4 ASP 7 ? D ASP 7 305 6 Y 1 4 SER 8 ? D SER 8 306 6 Y 1 4 GLY 9 ? D GLY 9 307 6 Y 1 5 ASP 1 ? E ASP 1 308 6 Y 1 5 ALA 2 ? E ALA 2 309 6 Y 1 5 GLU 3 ? E GLU 3 310 6 Y 1 5 PHE 4 ? E PHE 4 311 6 Y 1 5 ARG 5 ? E ARG 5 312 6 Y 1 5 HIS 6 ? E HIS 6 313 6 Y 1 5 ASP 7 ? E ASP 7 314 6 Y 1 5 SER 8 ? E SER 8 315 6 Y 1 5 GLY 9 ? E GLY 9 316 6 Y 1 6 ASP 1 ? F ASP 1 317 6 Y 1 6 ALA 2 ? F ALA 2 318 6 Y 1 6 GLU 3 ? F GLU 3 319 6 Y 1 6 PHE 4 ? F PHE 4 320 6 Y 1 6 ARG 5 ? F ARG 5 321 6 Y 1 6 HIS 6 ? F HIS 6 322 6 Y 1 6 ASP 7 ? F ASP 7 323 6 Y 1 6 SER 8 ? F SER 8 324 6 Y 1 6 GLY 9 ? F GLY 9 325 7 Y 1 1 ASP 1 ? A ASP 1 326 7 Y 1 1 ALA 2 ? A ALA 2 327 7 Y 1 1 GLU 3 ? A GLU 3 328 7 Y 1 1 PHE 4 ? A PHE 4 329 7 Y 1 1 ARG 5 ? A ARG 5 330 7 Y 1 1 HIS 6 ? A HIS 6 331 7 Y 1 1 ASP 7 ? A ASP 7 332 7 Y 1 1 SER 8 ? A SER 8 333 7 Y 1 1 GLY 9 ? A GLY 9 334 7 Y 1 2 ASP 1 ? B ASP 1 335 7 Y 1 2 ALA 2 ? B ALA 2 336 7 Y 1 2 GLU 3 ? B GLU 3 337 7 Y 1 2 PHE 4 ? B PHE 4 338 7 Y 1 2 ARG 5 ? B ARG 5 339 7 Y 1 2 HIS 6 ? B HIS 6 340 7 Y 1 2 ASP 7 ? B ASP 7 341 7 Y 1 2 SER 8 ? B SER 8 342 7 Y 1 2 GLY 9 ? B GLY 9 343 7 Y 1 3 ASP 1 ? C ASP 1 344 7 Y 1 3 ALA 2 ? C ALA 2 345 7 Y 1 3 GLU 3 ? C GLU 3 346 7 Y 1 3 PHE 4 ? C PHE 4 347 7 Y 1 3 ARG 5 ? C ARG 5 348 7 Y 1 3 HIS 6 ? C HIS 6 349 7 Y 1 3 ASP 7 ? C ASP 7 350 7 Y 1 3 SER 8 ? C SER 8 351 7 Y 1 3 GLY 9 ? C GLY 9 352 7 Y 1 4 ASP 1 ? D ASP 1 353 7 Y 1 4 ALA 2 ? D ALA 2 354 7 Y 1 4 GLU 3 ? D GLU 3 355 7 Y 1 4 PHE 4 ? D PHE 4 356 7 Y 1 4 ARG 5 ? D ARG 5 357 7 Y 1 4 HIS 6 ? D HIS 6 358 7 Y 1 4 ASP 7 ? D ASP 7 359 7 Y 1 4 SER 8 ? D SER 8 360 7 Y 1 4 GLY 9 ? D GLY 9 361 7 Y 1 5 ASP 1 ? E ASP 1 362 7 Y 1 5 ALA 2 ? E ALA 2 363 7 Y 1 5 GLU 3 ? E GLU 3 364 7 Y 1 5 PHE 4 ? E PHE 4 365 7 Y 1 5 ARG 5 ? E ARG 5 366 7 Y 1 5 HIS 6 ? E HIS 6 367 7 Y 1 5 ASP 7 ? E ASP 7 368 7 Y 1 5 SER 8 ? E SER 8 369 7 Y 1 5 GLY 9 ? E GLY 9 370 7 Y 1 6 ASP 1 ? F ASP 1 371 7 Y 1 6 ALA 2 ? F ALA 2 372 7 Y 1 6 GLU 3 ? F GLU 3 373 7 Y 1 6 PHE 4 ? F PHE 4 374 7 Y 1 6 ARG 5 ? F ARG 5 375 7 Y 1 6 HIS 6 ? F HIS 6 376 7 Y 1 6 ASP 7 ? F ASP 7 377 7 Y 1 6 SER 8 ? F SER 8 378 7 Y 1 6 GLY 9 ? F GLY 9 379 8 Y 1 1 ASP 1 ? A ASP 1 380 8 Y 1 1 ALA 2 ? A ALA 2 381 8 Y 1 1 GLU 3 ? A GLU 3 382 8 Y 1 1 PHE 4 ? A PHE 4 383 8 Y 1 1 ARG 5 ? A ARG 5 384 8 Y 1 1 HIS 6 ? A HIS 6 385 8 Y 1 1 ASP 7 ? A ASP 7 386 8 Y 1 1 SER 8 ? A SER 8 387 8 Y 1 1 GLY 9 ? A GLY 9 388 8 Y 1 2 ASP 1 ? B ASP 1 389 8 Y 1 2 ALA 2 ? B ALA 2 390 8 Y 1 2 GLU 3 ? B GLU 3 391 8 Y 1 2 PHE 4 ? B PHE 4 392 8 Y 1 2 ARG 5 ? B ARG 5 393 8 Y 1 2 HIS 6 ? B HIS 6 394 8 Y 1 2 ASP 7 ? B ASP 7 395 8 Y 1 2 SER 8 ? B SER 8 396 8 Y 1 2 GLY 9 ? B GLY 9 397 8 Y 1 3 ASP 1 ? C ASP 1 398 8 Y 1 3 ALA 2 ? C ALA 2 399 8 Y 1 3 GLU 3 ? C GLU 3 400 8 Y 1 3 PHE 4 ? C PHE 4 401 8 Y 1 3 ARG 5 ? C ARG 5 402 8 Y 1 3 HIS 6 ? C HIS 6 403 8 Y 1 3 ASP 7 ? C ASP 7 404 8 Y 1 3 SER 8 ? C SER 8 405 8 Y 1 3 GLY 9 ? C GLY 9 406 8 Y 1 4 ASP 1 ? D ASP 1 407 8 Y 1 4 ALA 2 ? D ALA 2 408 8 Y 1 4 GLU 3 ? D GLU 3 409 8 Y 1 4 PHE 4 ? D PHE 4 410 8 Y 1 4 ARG 5 ? D ARG 5 411 8 Y 1 4 HIS 6 ? D HIS 6 412 8 Y 1 4 ASP 7 ? D ASP 7 413 8 Y 1 4 SER 8 ? D SER 8 414 8 Y 1 4 GLY 9 ? D GLY 9 415 8 Y 1 5 ASP 1 ? E ASP 1 416 8 Y 1 5 ALA 2 ? E ALA 2 417 8 Y 1 5 GLU 3 ? E GLU 3 418 8 Y 1 5 PHE 4 ? E PHE 4 419 8 Y 1 5 ARG 5 ? E ARG 5 420 8 Y 1 5 HIS 6 ? E HIS 6 421 8 Y 1 5 ASP 7 ? E ASP 7 422 8 Y 1 5 SER 8 ? E SER 8 423 8 Y 1 5 GLY 9 ? E GLY 9 424 8 Y 1 6 ASP 1 ? F ASP 1 425 8 Y 1 6 ALA 2 ? F ALA 2 426 8 Y 1 6 GLU 3 ? F GLU 3 427 8 Y 1 6 PHE 4 ? F PHE 4 428 8 Y 1 6 ARG 5 ? F ARG 5 429 8 Y 1 6 HIS 6 ? F HIS 6 430 8 Y 1 6 ASP 7 ? F ASP 7 431 8 Y 1 6 SER 8 ? F SER 8 432 8 Y 1 6 GLY 9 ? F GLY 9 433 9 Y 1 1 ASP 1 ? A ASP 1 434 9 Y 1 1 ALA 2 ? A ALA 2 435 9 Y 1 1 GLU 3 ? A GLU 3 436 9 Y 1 1 PHE 4 ? A PHE 4 437 9 Y 1 1 ARG 5 ? A ARG 5 438 9 Y 1 1 HIS 6 ? A HIS 6 439 9 Y 1 1 ASP 7 ? A ASP 7 440 9 Y 1 1 SER 8 ? A SER 8 441 9 Y 1 1 GLY 9 ? A GLY 9 442 9 Y 1 2 ASP 1 ? B ASP 1 443 9 Y 1 2 ALA 2 ? B ALA 2 444 9 Y 1 2 GLU 3 ? B GLU 3 445 9 Y 1 2 PHE 4 ? B PHE 4 446 9 Y 1 2 ARG 5 ? B ARG 5 447 9 Y 1 2 HIS 6 ? B HIS 6 448 9 Y 1 2 ASP 7 ? B ASP 7 449 9 Y 1 2 SER 8 ? B SER 8 450 9 Y 1 2 GLY 9 ? B GLY 9 451 9 Y 1 3 ASP 1 ? C ASP 1 452 9 Y 1 3 ALA 2 ? C ALA 2 453 9 Y 1 3 GLU 3 ? C GLU 3 454 9 Y 1 3 PHE 4 ? C PHE 4 455 9 Y 1 3 ARG 5 ? C ARG 5 456 9 Y 1 3 HIS 6 ? C HIS 6 457 9 Y 1 3 ASP 7 ? C ASP 7 458 9 Y 1 3 SER 8 ? C SER 8 459 9 Y 1 3 GLY 9 ? C GLY 9 460 9 Y 1 4 ASP 1 ? D ASP 1 461 9 Y 1 4 ALA 2 ? D ALA 2 462 9 Y 1 4 GLU 3 ? D GLU 3 463 9 Y 1 4 PHE 4 ? D PHE 4 464 9 Y 1 4 ARG 5 ? D ARG 5 465 9 Y 1 4 HIS 6 ? D HIS 6 466 9 Y 1 4 ASP 7 ? D ASP 7 467 9 Y 1 4 SER 8 ? D SER 8 468 9 Y 1 4 GLY 9 ? D GLY 9 469 9 Y 1 5 ASP 1 ? E ASP 1 470 9 Y 1 5 ALA 2 ? E ALA 2 471 9 Y 1 5 GLU 3 ? E GLU 3 472 9 Y 1 5 PHE 4 ? E PHE 4 473 9 Y 1 5 ARG 5 ? E ARG 5 474 9 Y 1 5 HIS 6 ? E HIS 6 475 9 Y 1 5 ASP 7 ? E ASP 7 476 9 Y 1 5 SER 8 ? E SER 8 477 9 Y 1 5 GLY 9 ? E GLY 9 478 9 Y 1 6 ASP 1 ? F ASP 1 479 9 Y 1 6 ALA 2 ? F ALA 2 480 9 Y 1 6 GLU 3 ? F GLU 3 481 9 Y 1 6 PHE 4 ? F PHE 4 482 9 Y 1 6 ARG 5 ? F ARG 5 483 9 Y 1 6 HIS 6 ? F HIS 6 484 9 Y 1 6 ASP 7 ? F ASP 7 485 9 Y 1 6 SER 8 ? F SER 8 486 9 Y 1 6 GLY 9 ? F GLY 9 487 10 Y 1 1 ASP 1 ? A ASP 1 488 10 Y 1 1 ALA 2 ? A ALA 2 489 10 Y 1 1 GLU 3 ? A GLU 3 490 10 Y 1 1 PHE 4 ? A PHE 4 491 10 Y 1 1 ARG 5 ? A ARG 5 492 10 Y 1 1 HIS 6 ? A HIS 6 493 10 Y 1 1 ASP 7 ? A ASP 7 494 10 Y 1 1 SER 8 ? A SER 8 495 10 Y 1 1 GLY 9 ? A GLY 9 496 10 Y 1 2 ASP 1 ? B ASP 1 497 10 Y 1 2 ALA 2 ? B ALA 2 498 10 Y 1 2 GLU 3 ? B GLU 3 499 10 Y 1 2 PHE 4 ? B PHE 4 500 10 Y 1 2 ARG 5 ? B ARG 5 501 10 Y 1 2 HIS 6 ? B HIS 6 502 10 Y 1 2 ASP 7 ? B ASP 7 503 10 Y 1 2 SER 8 ? B SER 8 504 10 Y 1 2 GLY 9 ? B GLY 9 505 10 Y 1 3 ASP 1 ? C ASP 1 506 10 Y 1 3 ALA 2 ? C ALA 2 507 10 Y 1 3 GLU 3 ? C GLU 3 508 10 Y 1 3 PHE 4 ? C PHE 4 509 10 Y 1 3 ARG 5 ? C ARG 5 510 10 Y 1 3 HIS 6 ? C HIS 6 511 10 Y 1 3 ASP 7 ? C ASP 7 512 10 Y 1 3 SER 8 ? C SER 8 513 10 Y 1 3 GLY 9 ? C GLY 9 514 10 Y 1 4 ASP 1 ? D ASP 1 515 10 Y 1 4 ALA 2 ? D ALA 2 516 10 Y 1 4 GLU 3 ? D GLU 3 517 10 Y 1 4 PHE 4 ? D PHE 4 518 10 Y 1 4 ARG 5 ? D ARG 5 519 10 Y 1 4 HIS 6 ? D HIS 6 520 10 Y 1 4 ASP 7 ? D ASP 7 521 10 Y 1 4 SER 8 ? D SER 8 522 10 Y 1 4 GLY 9 ? D GLY 9 523 10 Y 1 5 ASP 1 ? E ASP 1 524 10 Y 1 5 ALA 2 ? E ALA 2 525 10 Y 1 5 GLU 3 ? E GLU 3 526 10 Y 1 5 PHE 4 ? E PHE 4 527 10 Y 1 5 ARG 5 ? E ARG 5 528 10 Y 1 5 HIS 6 ? E HIS 6 529 10 Y 1 5 ASP 7 ? E ASP 7 530 10 Y 1 5 SER 8 ? E SER 8 531 10 Y 1 5 GLY 9 ? E GLY 9 532 10 Y 1 6 ASP 1 ? F ASP 1 533 10 Y 1 6 ALA 2 ? F ALA 2 534 10 Y 1 6 GLU 3 ? F GLU 3 535 10 Y 1 6 PHE 4 ? F PHE 4 536 10 Y 1 6 ARG 5 ? F ARG 5 537 10 Y 1 6 HIS 6 ? F HIS 6 538 10 Y 1 6 ASP 7 ? F ASP 7 539 10 Y 1 6 SER 8 ? F SER 8 540 10 Y 1 6 GLY 9 ? F GLY 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 SER N N N N 256 SER CA C N S 257 SER C C N N 258 SER O O N N 259 SER CB C N N 260 SER OG O N N 261 SER OXT O N N 262 SER H H N N 263 SER H2 H N N 264 SER HA H N N 265 SER HB2 H N N 266 SER HB3 H N N 267 SER HG H N N 268 SER HXT H N N 269 TYR N N N N 270 TYR CA C N S 271 TYR C C N N 272 TYR O O N N 273 TYR CB C N N 274 TYR CG C Y N 275 TYR CD1 C Y N 276 TYR CD2 C Y N 277 TYR CE1 C Y N 278 TYR CE2 C Y N 279 TYR CZ C Y N 280 TYR OH O N N 281 TYR OXT O N N 282 TYR H H N N 283 TYR H2 H N N 284 TYR HA H N N 285 TYR HB2 H N N 286 TYR HB3 H N N 287 TYR HD1 H N N 288 TYR HD2 H N N 289 TYR HE1 H N N 290 TYR HE2 H N N 291 TYR HH H N N 292 TYR HXT H N N 293 VAL N N N N 294 VAL CA C N S 295 VAL C C N N 296 VAL O O N N 297 VAL CB C N N 298 VAL CG1 C N N 299 VAL CG2 C N N 300 VAL OXT O N N 301 VAL H H N N 302 VAL H2 H N N 303 VAL HA H N N 304 VAL HB H N N 305 VAL HG11 H N N 306 VAL HG12 H N N 307 VAL HG13 H N N 308 VAL HG21 H N N 309 VAL HG22 H N N 310 VAL HG23 H N N 311 VAL HXT H N N 312 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 TYR N CA sing N N 258 TYR N H sing N N 259 TYR N H2 sing N N 260 TYR CA C sing N N 261 TYR CA CB sing N N 262 TYR CA HA sing N N 263 TYR C O doub N N 264 TYR C OXT sing N N 265 TYR CB CG sing N N 266 TYR CB HB2 sing N N 267 TYR CB HB3 sing N N 268 TYR CG CD1 doub Y N 269 TYR CG CD2 sing Y N 270 TYR CD1 CE1 sing Y N 271 TYR CD1 HD1 sing N N 272 TYR CD2 CE2 doub Y N 273 TYR CD2 HD2 sing N N 274 TYR CE1 CZ doub Y N 275 TYR CE1 HE1 sing N N 276 TYR CE2 CZ sing Y N 277 TYR CE2 HE2 sing N N 278 TYR CZ OH sing N N 279 TYR OH HH sing N N 280 TYR OXT HXT sing N N 281 VAL N CA sing N N 282 VAL N H sing N N 283 VAL N H2 sing N N 284 VAL CA C sing N N 285 VAL CA CB sing N N 286 VAL CA HA sing N N 287 VAL C O doub N N 288 VAL C OXT sing N N 289 VAL CB CG1 sing N N 290 VAL CB CG2 sing N N 291 VAL CB HB sing N N 292 VAL CG1 HG11 sing N N 293 VAL CG1 HG12 sing N N 294 VAL CG1 HG13 sing N N 295 VAL CG2 HG21 sing N N 296 VAL CG2 HG22 sing N N 297 VAL CG2 HG23 sing N N 298 VAL OXT HXT sing N N 299 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 10 _em_buffer_component.concentration_units mM _em_buffer_component.formula Na2HPO4/NaH2PO4 _em_buffer_component.name 'Phosphate buffer' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ;The correction was done in Gctf and is corrected for amplitude. Per -particle CTF refinement was done prior to final reconstruction. ; # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 29 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 179.66 _em_helical_entity.axial_rise_per_subunit 2.45 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'The selected images were corrected for gain. The gain reference was not rotated or flipped.' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 73.5 _em_image_recording.average_exposure_time 10 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1337 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'The particles were picked using Relion manual pick, with a 20A low pass filter and particle diameter of 30A.' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 19790 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' 'manual picking' RELION 3.0 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM v3.7 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' 'model was built manually' Coot 0.8.9 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? X-PLOR 2.53 ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 'INITIAL EULER ASSIGNMENT' ? MATLAB ? 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 13 CLASSIFICATION 'modified from 3.0-beta' RELION custom 1 ? ? 14 RECONSTRUCTION 'modified from 3.0-beta' RELION custom 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.45 _em_specimen.details 'Protein exists in solution as amyloid fibrils of varying lengths.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model InfinityPlus _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 6W0O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_