HEADER TRANSFERASE 03-MAR-20 6W0Z
TITLE STRUCTURE OF KHK IN COMPLEX WITH COMPOUND 8 (2-[(1~{S},5~{R})-3-[2-
TITLE 2 [(2~{S})-2-METHYLAZETIDIN-1-YL]-6-(TRIFLUOROMETHYL)PYRIMIDIN-4-YL]-3-
TITLE 3 AZABICYCLO[3.1.0]HEXAN-6-YL]ETHANOIC ACID)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: KETOHEXOKINASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: HEPATIC FRUCTOKINASE;
COMPND 5 EC: 2.7.1.3;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KHK;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS KETOHEXOKINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.JASTI
REVDAT 4 11-OCT-23 6W0Z 1 REMARK
REVDAT 3 09-DEC-20 6W0Z 1 JRNL
REVDAT 2 30-SEP-20 6W0Z 1 JRNL
REVDAT 1 23-SEP-20 6W0Z 0
JRNL AUTH K.FUTATSUGI,A.C.SMITH,M.TU,B.RAYMER,K.AHN,S.B.COFFEY,
JRNL AUTH 2 M.S.DOWLING,D.P.FERNANDO,J.A.GUTIERREZ,K.HUARD,J.JASTI,
JRNL AUTH 3 A.S.KALGUTKAR,J.D.KNAFELS,J.PANDIT,K.D.PARRIS,S.PEREZ,
JRNL AUTH 4 J.A.PFEFFERKORN,D.A.PRICE,T.RYDER,A.SHAVNYA,I.A.STOCK,
JRNL AUTH 5 A.S.TSAI,G.J.TESZ,B.A.THUMA,Y.WENG,H.M.WISNIEWSKA,G.XING,
JRNL AUTH 6 J.ZHOU,T.V.MAGEE
JRNL TITL DISCOVERY OF PF-06835919: A POTENT INHIBITOR OF
JRNL TITL 2 KETOHEXOKINASE (KHK) FOR THE TREATMENT OF METABOLIC
JRNL TITL 3 DISORDERS DRIVEN BY THE OVERCONSUMPTION OF FRUCTOSE.
JRNL REF J.MED.CHEM. V. 63 13546 2020
JRNL REFN ISSN 0022-2623
JRNL PMID 32910646
JRNL DOI 10.1021/ACS.JMEDCHEM.0C00944
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.95
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 3 NUMBER OF REFLECTIONS : 42140
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.181
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.195
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730
REMARK 3 FREE R VALUE TEST SET COUNT : 1994
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 843
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2168
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 801
REMARK 3 BIN R VALUE (WORKING SET) : 0.2129
REMARK 3 BIN FREE R VALUE : 0.2949
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4547
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 65
REMARK 3 SOLVENT ATOMS : 276
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.66320
REMARK 3 B22 (A**2) : -4.89060
REMARK 3 B33 (A**2) : 1.22740
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.200
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.154
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.193
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.153
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4716 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6398 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1657 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 833 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4716 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 590 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 5303 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.14
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.44
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.44
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -0.8050 12.0997 16.3601
REMARK 3 T TENSOR
REMARK 3 T11: 0.1049 T22: -0.2776
REMARK 3 T33: -0.0981 T12: -0.0138
REMARK 3 T13: 0.0746 T23: 0.0192
REMARK 3 L TENSOR
REMARK 3 L11: 1.2154 L22: 2.3302
REMARK 3 L33: 4.5186 L12: -0.5504
REMARK 3 L13: -0.3025 L23: 2.2370
REMARK 3 S TENSOR
REMARK 3 S11: 0.1389 S12: 0.1450 S13: 0.2922
REMARK 3 S21: -0.4668 S22: -0.0932 S23: 0.1541
REMARK 3 S31: -1.1437 S32: 0.0411 S33: -0.0457
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -12.0141 18.6821 58.1803
REMARK 3 T TENSOR
REMARK 3 T11: -0.1312 T22: -0.0699
REMARK 3 T33: -0.0135 T12: 0.0196
REMARK 3 T13: 0.0232 T23: 0.0347
REMARK 3 L TENSOR
REMARK 3 L11: 1.3283 L22: 1.0213
REMARK 3 L33: 1.0608 L12: -0.0525
REMARK 3 L13: -0.4249 L23: 0.1318
REMARK 3 S TENSOR
REMARK 3 S11: -0.0400 S12: -0.0836 S13: -0.1978
REMARK 3 S21: -0.0331 S22: -0.0166 S23: 0.0077
REMARK 3 S31: 0.0948 S32: -0.0209 S33: 0.0565
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6W0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1000247449.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-FEB-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42239
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 82.880
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 200 DATA REDUNDANCY : 6.400
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: PDB ENTRY 5WBM
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.22
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% PEG8000, 100 MM SODIUM CITRATE,
REMARK 280 PH 4.4-4.7, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.20750
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59300
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.44150
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.59300
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.20750
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.44150
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24420 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -14
REMARK 465 GLY A -13
REMARK 465 SER A -12
REMARK 465 SER A -11
REMARK 465 HIS A -10
REMARK 465 HIS A -9
REMARK 465 HIS A -8
REMARK 465 HIS A -7
REMARK 465 HIS A -6
REMARK 465 HIS A -5
REMARK 465 SER A -4
REMARK 465 SER A -3
REMARK 465 GLY A -2
REMARK 465 LEU A -1
REMARK 465 VAL A 0
REMARK 465 PRO A 1
REMARK 465 ARG A 2
REMARK 465 MET B -14
REMARK 465 GLY B -13
REMARK 465 SER B -12
REMARK 465 SER B -11
REMARK 465 HIS B -10
REMARK 465 HIS B -9
REMARK 465 HIS B -8
REMARK 465 HIS B -7
REMARK 465 HIS B -6
REMARK 465 HIS B -5
REMARK 465 SER B -4
REMARK 465 SER B -3
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 27 -1.06 79.81
REMARK 500 ASN A 105 -8.92 -149.62
REMARK 500 THR A 115 12.49 -44.57
REMARK 500 ARG A 141 -77.67 -138.92
REMARK 500 ALA A 226 -123.78 48.72
REMARK 500 ASP B 27 -7.00 82.55
REMARK 500 ASN B 105 -7.62 -148.27
REMARK 500 ARG B 141 -84.66 -142.37
REMARK 500 ALA B 226 -124.84 49.29
REMARK 500 ASP B 252 113.19 -161.44
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 495 DISTANCE = 12.15 ANGSTROMS
REMARK 525 HOH B 579 DISTANCE = 6.15 ANGSTROMS
REMARK 525 HOH B 580 DISTANCE = 13.67 ANGSTROMS
REMARK 525 HOH B 581 DISTANCE = 15.61 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue S6D A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue S6D B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303
DBREF 6W0Z A 5 298 UNP P50053 KHK_HUMAN 5 298
DBREF 6W0Z B 5 298 UNP P50053 KHK_HUMAN 5 298
SEQADV 6W0Z MET A -14 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY A -13 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER A -12 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER A -11 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -10 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -9 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -8 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -7 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -6 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS A -5 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER A -4 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER A -3 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY A -2 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z LEU A -1 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z VAL A 0 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z PRO A 1 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z ARG A 2 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY A 3 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER A 4 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z MET B -14 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY B -13 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER B -12 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER B -11 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -10 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -9 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -8 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -7 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -6 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z HIS B -5 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER B -4 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER B -3 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY B -2 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z LEU B -1 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z VAL B 0 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z PRO B 1 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z ARG B 2 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z GLY B 3 UNP P50053 EXPRESSION TAG
SEQADV 6W0Z SER B 4 UNP P50053 EXPRESSION TAG
SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 313 LEU VAL PRO ARG GLY SER GLN ILE LEU CYS VAL GLY LEU
SEQRES 3 A 313 VAL VAL LEU ASP VAL ILE SER LEU VAL ASP LYS TYR PRO
SEQRES 4 A 313 LYS GLU ASP SER GLU ILE ARG CYS LEU SER GLN ARG TRP
SEQRES 5 A 313 GLN ARG GLY GLY ASN ALA SER ASN SER CYS THR VAL LEU
SEQRES 6 A 313 SER LEU LEU GLY ALA PRO CYS ALA PHE MET GLY SER MET
SEQRES 7 A 313 ALA PRO GLY HIS VAL ALA ASP PHE LEU VAL ALA ASP PHE
SEQRES 8 A 313 ARG ARG ARG GLY VAL ASP VAL SER GLN VAL ALA TRP GLN
SEQRES 9 A 313 SER LYS GLY ASP THR PRO SER SER CYS CYS ILE ILE ASN
SEQRES 10 A 313 ASN SER ASN GLY ASN ARG THR ILE VAL LEU HIS ASP THR
SEQRES 11 A 313 SER LEU PRO ASP VAL SER ALA THR ASP PHE GLU LYS VAL
SEQRES 12 A 313 ASP LEU THR GLN PHE LYS TRP ILE HIS ILE GLU GLY ARG
SEQRES 13 A 313 ASN ALA SER GLU GLN VAL LYS MET LEU GLN ARG ILE ASP
SEQRES 14 A 313 ALA HIS ASN THR ARG GLN PRO PRO GLU GLN LYS ILE ARG
SEQRES 15 A 313 VAL SER VAL GLU VAL GLU LYS PRO ARG GLU GLU LEU PHE
SEQRES 16 A 313 GLN LEU PHE GLY TYR GLY ASP VAL VAL PHE VAL SER LYS
SEQRES 17 A 313 ASP VAL ALA LYS HIS LEU GLY PHE GLN SER ALA GLU GLU
SEQRES 18 A 313 ALA LEU ARG GLY LEU TYR GLY ARG VAL ARG LYS GLY ALA
SEQRES 19 A 313 VAL LEU VAL CYS ALA TRP ALA GLU GLU GLY ALA ASP ALA
SEQRES 20 A 313 LEU GLY PRO ASP GLY LYS LEU LEU HIS SER ASP ALA PHE
SEQRES 21 A 313 PRO PRO PRO ARG VAL VAL ASP THR LEU GLY ALA GLY ASP
SEQRES 22 A 313 THR PHE ASN ALA SER VAL ILE PHE SER LEU SER GLN GLY
SEQRES 23 A 313 ARG SER VAL GLN GLU ALA LEU ARG PHE GLY CYS GLN VAL
SEQRES 24 A 313 ALA GLY LYS LYS CYS GLY LEU GLN GLY PHE ASP GLY ILE
SEQRES 25 A 313 VAL
SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 B 313 LEU VAL PRO ARG GLY SER GLN ILE LEU CYS VAL GLY LEU
SEQRES 3 B 313 VAL VAL LEU ASP VAL ILE SER LEU VAL ASP LYS TYR PRO
SEQRES 4 B 313 LYS GLU ASP SER GLU ILE ARG CYS LEU SER GLN ARG TRP
SEQRES 5 B 313 GLN ARG GLY GLY ASN ALA SER ASN SER CYS THR VAL LEU
SEQRES 6 B 313 SER LEU LEU GLY ALA PRO CYS ALA PHE MET GLY SER MET
SEQRES 7 B 313 ALA PRO GLY HIS VAL ALA ASP PHE LEU VAL ALA ASP PHE
SEQRES 8 B 313 ARG ARG ARG GLY VAL ASP VAL SER GLN VAL ALA TRP GLN
SEQRES 9 B 313 SER LYS GLY ASP THR PRO SER SER CYS CYS ILE ILE ASN
SEQRES 10 B 313 ASN SER ASN GLY ASN ARG THR ILE VAL LEU HIS ASP THR
SEQRES 11 B 313 SER LEU PRO ASP VAL SER ALA THR ASP PHE GLU LYS VAL
SEQRES 12 B 313 ASP LEU THR GLN PHE LYS TRP ILE HIS ILE GLU GLY ARG
SEQRES 13 B 313 ASN ALA SER GLU GLN VAL LYS MET LEU GLN ARG ILE ASP
SEQRES 14 B 313 ALA HIS ASN THR ARG GLN PRO PRO GLU GLN LYS ILE ARG
SEQRES 15 B 313 VAL SER VAL GLU VAL GLU LYS PRO ARG GLU GLU LEU PHE
SEQRES 16 B 313 GLN LEU PHE GLY TYR GLY ASP VAL VAL PHE VAL SER LYS
SEQRES 17 B 313 ASP VAL ALA LYS HIS LEU GLY PHE GLN SER ALA GLU GLU
SEQRES 18 B 313 ALA LEU ARG GLY LEU TYR GLY ARG VAL ARG LYS GLY ALA
SEQRES 19 B 313 VAL LEU VAL CYS ALA TRP ALA GLU GLU GLY ALA ASP ALA
SEQRES 20 B 313 LEU GLY PRO ASP GLY LYS LEU LEU HIS SER ASP ALA PHE
SEQRES 21 B 313 PRO PRO PRO ARG VAL VAL ASP THR LEU GLY ALA GLY ASP
SEQRES 22 B 313 THR PHE ASN ALA SER VAL ILE PHE SER LEU SER GLN GLY
SEQRES 23 B 313 ARG SER VAL GLN GLU ALA LEU ARG PHE GLY CYS GLN VAL
SEQRES 24 B 313 ALA GLY LYS LYS CYS GLY LEU GLN GLY PHE ASP GLY ILE
SEQRES 25 B 313 VAL
HET S6D A 301 25
HET SO4 A 302 5
HET S6D B 301 25
HET SO4 B 302 5
HET SO4 B 303 5
HETNAM S6D 2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-METHYLAZETIDIN-1-YL]-
HETNAM 2 S6D 6-(TRIFLUOROMETHYL)PYRIMIDIN-4-YL]-3-
HETNAM 3 S6D AZABICYCLO[3.1.0]HEXAN-6-YL]ETHANOIC ACID
HETNAM SO4 SULFATE ION
FORMUL 3 S6D 2(C16 H19 F3 N4 O2)
FORMUL 4 SO4 3(O4 S 2-)
FORMUL 8 HOH *276(H2 O)
HELIX 1 AA1 GLY A 41 LEU A 53 1 13
HELIX 2 AA2 GLY A 66 ARG A 79 1 14
HELIX 3 AA3 SER A 121 LYS A 127 1 7
HELIX 4 AA4 ASP A 129 THR A 131 5 3
HELIX 5 AA5 ASN A 142 ARG A 159 1 18
HELIX 6 AA6 GLN A 160 LYS A 165 5 6
HELIX 7 AA7 ARG A 176 TYR A 185 5 10
HELIX 8 AA8 SER A 192 LEU A 199 1 8
HELIX 9 AA9 SER A 203 TYR A 212 1 10
HELIX 10 AB1 GLY A 213 VAL A 215 5 3
HELIX 11 AB2 ALA A 226 GLU A 228 5 3
HELIX 12 AB3 GLY A 255 GLN A 270 1 16
HELIX 13 AB4 SER A 273 CYS A 289 1 17
HELIX 14 AB5 GLY B 41 LEU B 53 1 13
HELIX 15 AB6 GLY B 66 ARG B 79 1 14
HELIX 16 AB7 SER B 121 LYS B 127 1 7
HELIX 17 AB8 ASN B 142 ARG B 159 1 18
HELIX 18 AB9 GLN B 160 LYS B 165 5 6
HELIX 19 AC1 ARG B 176 TYR B 185 5 10
HELIX 20 AC2 SER B 192 LEU B 199 1 8
HELIX 21 AC3 SER B 203 TYR B 212 1 10
HELIX 22 AC4 GLY B 213 VAL B 215 5 3
HELIX 23 AC5 ALA B 226 GLU B 228 5 3
HELIX 24 AC6 GLY B 255 GLN B 270 1 16
HELIX 25 AC7 SER B 273 CYS B 289 1 17
SHEET 1 AA1 8 CYS A 57 MET A 60 0
SHEET 2 AA1 8 GLN A 5 VAL A 9 1 N CYS A 8 O MET A 60
SHEET 3 AA1 8 PHE A 133 GLU A 139 1 O HIS A 137 N LEU A 7
SHEET 4 AA1 8 ARG A 167 VAL A 172 1 O ARG A 167 N LYS A 134
SHEET 5 AA1 8 VAL A 188 VAL A 191 1 O PHE A 190 N VAL A 170
SHEET 6 AA1 8 VAL A 220 ALA A 224 1 O VAL A 222 N VAL A 189
SHEET 7 AA1 8 ALA A 230 LEU A 233 -1 O LEU A 233 N LEU A 221
SHEET 8 AA1 8 LEU A 239 SER A 242 -1 O LEU A 240 N ALA A 232
SHEET 1 AA2 5 SER A 34 GLY A 40 0
SHEET 2 AA2 5 VAL A 13 VAL A 20 -1 N VAL A 13 O GLY A 40
SHEET 3 AA2 5 SER A 96 ASN A 102 1 O ILE A 101 N SER A 18
SHEET 4 AA2 5 ARG A 108 HIS A 113 -1 O THR A 109 N ILE A 100
SHEET 5 AA2 5 GLU B 29 ARG B 31 1 O ILE B 30 N LEU A 112
SHEET 1 AA3 5 GLU A 29 ARG A 31 0
SHEET 2 AA3 5 ARG B 108 LEU B 112 1 O LEU B 112 N ILE A 30
SHEET 3 AA3 5 SER B 96 ASN B 102 -1 N ILE B 100 O THR B 109
SHEET 4 AA3 5 VAL B 13 VAL B 20 1 N SER B 18 O ILE B 101
SHEET 5 AA3 5 SER B 34 GLY B 40 -1 O GLN B 38 N ASP B 15
SHEET 1 AA4 2 SER A 62 MET A 63 0
SHEET 2 AA4 2 ALA A 87 TRP A 88 1 O ALA A 87 N MET A 63
SHEET 1 AA5 8 CYS B 57 MET B 60 0
SHEET 2 AA5 8 GLN B 5 VAL B 9 1 N CYS B 8 O MET B 60
SHEET 3 AA5 8 PHE B 133 GLU B 139 1 O HIS B 137 N LEU B 7
SHEET 4 AA5 8 ARG B 167 VAL B 172 1 O ARG B 167 N LYS B 134
SHEET 5 AA5 8 VAL B 188 VAL B 191 1 O PHE B 190 N VAL B 172
SHEET 6 AA5 8 VAL B 220 ALA B 224 1 O VAL B 222 N VAL B 189
SHEET 7 AA5 8 ALA B 230 LEU B 233 -1 O LEU B 233 N LEU B 221
SHEET 8 AA5 8 LEU B 239 SER B 242 -1 O LEU B 240 N ALA B 232
SHEET 1 AA6 2 SER B 62 MET B 63 0
SHEET 2 AA6 2 ALA B 87 TRP B 88 1 O ALA B 87 N MET B 63
SITE 1 AC1 16 ARG A 108 ALA A 226 GLU A 227 ALA A 244
SITE 2 AC1 16 PRO A 246 THR A 253 LEU A 254 GLY A 255
SITE 3 AC1 16 ALA A 256 GLY A 257 PHE A 260 CYS A 282
SITE 4 AC1 16 GLY A 286 CYS A 289 HOH A 409 HOH A 429
SITE 1 AC2 7 GLN A 38 ARG A 39 ASP A 75 ARG A 79
SITE 2 AC2 7 PHE A 294 HOH A 414 HOH A 423
SITE 1 AC3 15 ALA B 226 GLU B 227 ALA B 244 PRO B 246
SITE 2 AC3 15 THR B 253 LEU B 254 GLY B 255 ALA B 256
SITE 3 AC3 15 GLY B 257 PHE B 260 GLY B 286 CYS B 289
SITE 4 AC3 15 HOH B 443 HOH B 467 HOH B 468
SITE 1 AC4 4 ARG A 31 HIS B 113 ARG B 141 LYS B 174
SITE 1 AC5 4 ARG B 78 ARG B 79 GLY B 293 PHE B 294
CRYST1 82.415 82.883 137.186 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012134 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012065 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007289 0.00000