HEADER TRANSFERASE 03-MAR-20 6W0Z TITLE STRUCTURE OF KHK IN COMPLEX WITH COMPOUND 8 (2-[(1~{S},5~{R})-3-[2- TITLE 2 [(2~{S})-2-METHYLAZETIDIN-1-YL]-6-(TRIFLUOROMETHYL)PYRIMIDIN-4-YL]-3- TITLE 3 AZABICYCLO[3.1.0]HEXAN-6-YL]ETHANOIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOHEXOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEPATIC FRUCTOKINASE; COMPND 5 EC: 2.7.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KHK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KETOHEXOKINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.JASTI REVDAT 4 11-OCT-23 6W0Z 1 REMARK REVDAT 3 09-DEC-20 6W0Z 1 JRNL REVDAT 2 30-SEP-20 6W0Z 1 JRNL REVDAT 1 23-SEP-20 6W0Z 0 JRNL AUTH K.FUTATSUGI,A.C.SMITH,M.TU,B.RAYMER,K.AHN,S.B.COFFEY, JRNL AUTH 2 M.S.DOWLING,D.P.FERNANDO,J.A.GUTIERREZ,K.HUARD,J.JASTI, JRNL AUTH 3 A.S.KALGUTKAR,J.D.KNAFELS,J.PANDIT,K.D.PARRIS,S.PEREZ, JRNL AUTH 4 J.A.PFEFFERKORN,D.A.PRICE,T.RYDER,A.SHAVNYA,I.A.STOCK, JRNL AUTH 5 A.S.TSAI,G.J.TESZ,B.A.THUMA,Y.WENG,H.M.WISNIEWSKA,G.XING, JRNL AUTH 6 J.ZHOU,T.V.MAGEE JRNL TITL DISCOVERY OF PF-06835919: A POTENT INHIBITOR OF JRNL TITL 2 KETOHEXOKINASE (KHK) FOR THE TREATMENT OF METABOLIC JRNL TITL 3 DISORDERS DRIVEN BY THE OVERCONSUMPTION OF FRUCTOSE. JRNL REF J.MED.CHEM. V. 63 13546 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32910646 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00944 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 843 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2168 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 801 REMARK 3 BIN R VALUE (WORKING SET) : 0.2129 REMARK 3 BIN FREE R VALUE : 0.2949 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.66320 REMARK 3 B22 (A**2) : -4.89060 REMARK 3 B33 (A**2) : 1.22740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.200 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.154 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.193 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.153 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4716 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6398 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1657 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 833 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4716 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 590 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5303 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.8050 12.0997 16.3601 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: -0.2776 REMARK 3 T33: -0.0981 T12: -0.0138 REMARK 3 T13: 0.0746 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.2154 L22: 2.3302 REMARK 3 L33: 4.5186 L12: -0.5504 REMARK 3 L13: -0.3025 L23: 2.2370 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: 0.1450 S13: 0.2922 REMARK 3 S21: -0.4668 S22: -0.0932 S23: 0.1541 REMARK 3 S31: -1.1437 S32: 0.0411 S33: -0.0457 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -12.0141 18.6821 58.1803 REMARK 3 T TENSOR REMARK 3 T11: -0.1312 T22: -0.0699 REMARK 3 T33: -0.0135 T12: 0.0196 REMARK 3 T13: 0.0232 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.3283 L22: 1.0213 REMARK 3 L33: 1.0608 L12: -0.0525 REMARK 3 L13: -0.4249 L23: 0.1318 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0836 S13: -0.1978 REMARK 3 S21: -0.0331 S22: -0.0166 S23: 0.0077 REMARK 3 S31: 0.0948 S32: -0.0209 S33: 0.0565 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 82.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 5WBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-20% PEG8000, 100 MM SODIUM CITRATE, REMARK 280 PH 4.4-4.7, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.20750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.44150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.59300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.20750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.44150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 LEU A -1 REMARK 465 VAL A 0 REMARK 465 PRO A 1 REMARK 465 ARG A 2 REMARK 465 MET B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 SER B -4 REMARK 465 SER B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -1.06 79.81 REMARK 500 ASN A 105 -8.92 -149.62 REMARK 500 THR A 115 12.49 -44.57 REMARK 500 ARG A 141 -77.67 -138.92 REMARK 500 ALA A 226 -123.78 48.72 REMARK 500 ASP B 27 -7.00 82.55 REMARK 500 ASN B 105 -7.62 -148.27 REMARK 500 ARG B 141 -84.66 -142.37 REMARK 500 ALA B 226 -124.84 49.29 REMARK 500 ASP B 252 113.19 -161.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 495 DISTANCE = 12.15 ANGSTROMS REMARK 525 HOH B 579 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 580 DISTANCE = 13.67 ANGSTROMS REMARK 525 HOH B 581 DISTANCE = 15.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S6D A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S6D B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 6W0Z A 5 298 UNP P50053 KHK_HUMAN 5 298 DBREF 6W0Z B 5 298 UNP P50053 KHK_HUMAN 5 298 SEQADV 6W0Z MET A -14 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY A -13 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER A -12 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER A -11 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -10 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -9 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -8 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -7 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -6 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS A -5 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER A -4 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER A -3 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY A -2 UNP P50053 EXPRESSION TAG SEQADV 6W0Z LEU A -1 UNP P50053 EXPRESSION TAG SEQADV 6W0Z VAL A 0 UNP P50053 EXPRESSION TAG SEQADV 6W0Z PRO A 1 UNP P50053 EXPRESSION TAG SEQADV 6W0Z ARG A 2 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY A 3 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER A 4 UNP P50053 EXPRESSION TAG SEQADV 6W0Z MET B -14 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY B -13 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER B -12 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER B -11 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -10 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -9 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -8 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -7 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -6 UNP P50053 EXPRESSION TAG SEQADV 6W0Z HIS B -5 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER B -4 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER B -3 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY B -2 UNP P50053 EXPRESSION TAG SEQADV 6W0Z LEU B -1 UNP P50053 EXPRESSION TAG SEQADV 6W0Z VAL B 0 UNP P50053 EXPRESSION TAG SEQADV 6W0Z PRO B 1 UNP P50053 EXPRESSION TAG SEQADV 6W0Z ARG B 2 UNP P50053 EXPRESSION TAG SEQADV 6W0Z GLY B 3 UNP P50053 EXPRESSION TAG SEQADV 6W0Z SER B 4 UNP P50053 EXPRESSION TAG SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 313 LEU VAL PRO ARG GLY SER GLN ILE LEU CYS VAL GLY LEU SEQRES 3 A 313 VAL VAL LEU ASP VAL ILE SER LEU VAL ASP LYS TYR PRO SEQRES 4 A 313 LYS GLU ASP SER GLU ILE ARG CYS LEU SER GLN ARG TRP SEQRES 5 A 313 GLN ARG GLY GLY ASN ALA SER ASN SER CYS THR VAL LEU SEQRES 6 A 313 SER LEU LEU GLY ALA PRO CYS ALA PHE MET GLY SER MET SEQRES 7 A 313 ALA PRO GLY HIS VAL ALA ASP PHE LEU VAL ALA ASP PHE SEQRES 8 A 313 ARG ARG ARG GLY VAL ASP VAL SER GLN VAL ALA TRP GLN SEQRES 9 A 313 SER LYS GLY ASP THR PRO SER SER CYS CYS ILE ILE ASN SEQRES 10 A 313 ASN SER ASN GLY ASN ARG THR ILE VAL LEU HIS ASP THR SEQRES 11 A 313 SER LEU PRO ASP VAL SER ALA THR ASP PHE GLU LYS VAL SEQRES 12 A 313 ASP LEU THR GLN PHE LYS TRP ILE HIS ILE GLU GLY ARG SEQRES 13 A 313 ASN ALA SER GLU GLN VAL LYS MET LEU GLN ARG ILE ASP SEQRES 14 A 313 ALA HIS ASN THR ARG GLN PRO PRO GLU GLN LYS ILE ARG SEQRES 15 A 313 VAL SER VAL GLU VAL GLU LYS PRO ARG GLU GLU LEU PHE SEQRES 16 A 313 GLN LEU PHE GLY TYR GLY ASP VAL VAL PHE VAL SER LYS SEQRES 17 A 313 ASP VAL ALA LYS HIS LEU GLY PHE GLN SER ALA GLU GLU SEQRES 18 A 313 ALA LEU ARG GLY LEU TYR GLY ARG VAL ARG LYS GLY ALA SEQRES 19 A 313 VAL LEU VAL CYS ALA TRP ALA GLU GLU GLY ALA ASP ALA SEQRES 20 A 313 LEU GLY PRO ASP GLY LYS LEU LEU HIS SER ASP ALA PHE SEQRES 21 A 313 PRO PRO PRO ARG VAL VAL ASP THR LEU GLY ALA GLY ASP SEQRES 22 A 313 THR PHE ASN ALA SER VAL ILE PHE SER LEU SER GLN GLY SEQRES 23 A 313 ARG SER VAL GLN GLU ALA LEU ARG PHE GLY CYS GLN VAL SEQRES 24 A 313 ALA GLY LYS LYS CYS GLY LEU GLN GLY PHE ASP GLY ILE SEQRES 25 A 313 VAL SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 313 LEU VAL PRO ARG GLY SER GLN ILE LEU CYS VAL GLY LEU SEQRES 3 B 313 VAL VAL LEU ASP VAL ILE SER LEU VAL ASP LYS TYR PRO SEQRES 4 B 313 LYS GLU ASP SER GLU ILE ARG CYS LEU SER GLN ARG TRP SEQRES 5 B 313 GLN ARG GLY GLY ASN ALA SER ASN SER CYS THR VAL LEU SEQRES 6 B 313 SER LEU LEU GLY ALA PRO CYS ALA PHE MET GLY SER MET SEQRES 7 B 313 ALA PRO GLY HIS VAL ALA ASP PHE LEU VAL ALA ASP PHE SEQRES 8 B 313 ARG ARG ARG GLY VAL ASP VAL SER GLN VAL ALA TRP GLN SEQRES 9 B 313 SER LYS GLY ASP THR PRO SER SER CYS CYS ILE ILE ASN SEQRES 10 B 313 ASN SER ASN GLY ASN ARG THR ILE VAL LEU HIS ASP THR SEQRES 11 B 313 SER LEU PRO ASP VAL SER ALA THR ASP PHE GLU LYS VAL SEQRES 12 B 313 ASP LEU THR GLN PHE LYS TRP ILE HIS ILE GLU GLY ARG SEQRES 13 B 313 ASN ALA SER GLU GLN VAL LYS MET LEU GLN ARG ILE ASP SEQRES 14 B 313 ALA HIS ASN THR ARG GLN PRO PRO GLU GLN LYS ILE ARG SEQRES 15 B 313 VAL SER VAL GLU VAL GLU LYS PRO ARG GLU GLU LEU PHE SEQRES 16 B 313 GLN LEU PHE GLY TYR GLY ASP VAL VAL PHE VAL SER LYS SEQRES 17 B 313 ASP VAL ALA LYS HIS LEU GLY PHE GLN SER ALA GLU GLU SEQRES 18 B 313 ALA LEU ARG GLY LEU TYR GLY ARG VAL ARG LYS GLY ALA SEQRES 19 B 313 VAL LEU VAL CYS ALA TRP ALA GLU GLU GLY ALA ASP ALA SEQRES 20 B 313 LEU GLY PRO ASP GLY LYS LEU LEU HIS SER ASP ALA PHE SEQRES 21 B 313 PRO PRO PRO ARG VAL VAL ASP THR LEU GLY ALA GLY ASP SEQRES 22 B 313 THR PHE ASN ALA SER VAL ILE PHE SER LEU SER GLN GLY SEQRES 23 B 313 ARG SER VAL GLN GLU ALA LEU ARG PHE GLY CYS GLN VAL SEQRES 24 B 313 ALA GLY LYS LYS CYS GLY LEU GLN GLY PHE ASP GLY ILE SEQRES 25 B 313 VAL HET S6D A 301 25 HET SO4 A 302 5 HET S6D B 301 25 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM S6D 2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-METHYLAZETIDIN-1-YL]- HETNAM 2 S6D 6-(TRIFLUOROMETHYL)PYRIMIDIN-4-YL]-3- HETNAM 3 S6D AZABICYCLO[3.1.0]HEXAN-6-YL]ETHANOIC ACID HETNAM SO4 SULFATE ION FORMUL 3 S6D 2(C16 H19 F3 N4 O2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *276(H2 O) HELIX 1 AA1 GLY A 41 LEU A 53 1 13 HELIX 2 AA2 GLY A 66 ARG A 79 1 14 HELIX 3 AA3 SER A 121 LYS A 127 1 7 HELIX 4 AA4 ASP A 129 THR A 131 5 3 HELIX 5 AA5 ASN A 142 ARG A 159 1 18 HELIX 6 AA6 GLN A 160 LYS A 165 5 6 HELIX 7 AA7 ARG A 176 TYR A 185 5 10 HELIX 8 AA8 SER A 192 LEU A 199 1 8 HELIX 9 AA9 SER A 203 TYR A 212 1 10 HELIX 10 AB1 GLY A 213 VAL A 215 5 3 HELIX 11 AB2 ALA A 226 GLU A 228 5 3 HELIX 12 AB3 GLY A 255 GLN A 270 1 16 HELIX 13 AB4 SER A 273 CYS A 289 1 17 HELIX 14 AB5 GLY B 41 LEU B 53 1 13 HELIX 15 AB6 GLY B 66 ARG B 79 1 14 HELIX 16 AB7 SER B 121 LYS B 127 1 7 HELIX 17 AB8 ASN B 142 ARG B 159 1 18 HELIX 18 AB9 GLN B 160 LYS B 165 5 6 HELIX 19 AC1 ARG B 176 TYR B 185 5 10 HELIX 20 AC2 SER B 192 LEU B 199 1 8 HELIX 21 AC3 SER B 203 TYR B 212 1 10 HELIX 22 AC4 GLY B 213 VAL B 215 5 3 HELIX 23 AC5 ALA B 226 GLU B 228 5 3 HELIX 24 AC6 GLY B 255 GLN B 270 1 16 HELIX 25 AC7 SER B 273 CYS B 289 1 17 SHEET 1 AA1 8 CYS A 57 MET A 60 0 SHEET 2 AA1 8 GLN A 5 VAL A 9 1 N CYS A 8 O MET A 60 SHEET 3 AA1 8 PHE A 133 GLU A 139 1 O HIS A 137 N LEU A 7 SHEET 4 AA1 8 ARG A 167 VAL A 172 1 O ARG A 167 N LYS A 134 SHEET 5 AA1 8 VAL A 188 VAL A 191 1 O PHE A 190 N VAL A 170 SHEET 6 AA1 8 VAL A 220 ALA A 224 1 O VAL A 222 N VAL A 189 SHEET 7 AA1 8 ALA A 230 LEU A 233 -1 O LEU A 233 N LEU A 221 SHEET 8 AA1 8 LEU A 239 SER A 242 -1 O LEU A 240 N ALA A 232 SHEET 1 AA2 5 SER A 34 GLY A 40 0 SHEET 2 AA2 5 VAL A 13 VAL A 20 -1 N VAL A 13 O GLY A 40 SHEET 3 AA2 5 SER A 96 ASN A 102 1 O ILE A 101 N SER A 18 SHEET 4 AA2 5 ARG A 108 HIS A 113 -1 O THR A 109 N ILE A 100 SHEET 5 AA2 5 GLU B 29 ARG B 31 1 O ILE B 30 N LEU A 112 SHEET 1 AA3 5 GLU A 29 ARG A 31 0 SHEET 2 AA3 5 ARG B 108 LEU B 112 1 O LEU B 112 N ILE A 30 SHEET 3 AA3 5 SER B 96 ASN B 102 -1 N ILE B 100 O THR B 109 SHEET 4 AA3 5 VAL B 13 VAL B 20 1 N SER B 18 O ILE B 101 SHEET 5 AA3 5 SER B 34 GLY B 40 -1 O GLN B 38 N ASP B 15 SHEET 1 AA4 2 SER A 62 MET A 63 0 SHEET 2 AA4 2 ALA A 87 TRP A 88 1 O ALA A 87 N MET A 63 SHEET 1 AA5 8 CYS B 57 MET B 60 0 SHEET 2 AA5 8 GLN B 5 VAL B 9 1 N CYS B 8 O MET B 60 SHEET 3 AA5 8 PHE B 133 GLU B 139 1 O HIS B 137 N LEU B 7 SHEET 4 AA5 8 ARG B 167 VAL B 172 1 O ARG B 167 N LYS B 134 SHEET 5 AA5 8 VAL B 188 VAL B 191 1 O PHE B 190 N VAL B 172 SHEET 6 AA5 8 VAL B 220 ALA B 224 1 O VAL B 222 N VAL B 189 SHEET 7 AA5 8 ALA B 230 LEU B 233 -1 O LEU B 233 N LEU B 221 SHEET 8 AA5 8 LEU B 239 SER B 242 -1 O LEU B 240 N ALA B 232 SHEET 1 AA6 2 SER B 62 MET B 63 0 SHEET 2 AA6 2 ALA B 87 TRP B 88 1 O ALA B 87 N MET B 63 SITE 1 AC1 16 ARG A 108 ALA A 226 GLU A 227 ALA A 244 SITE 2 AC1 16 PRO A 246 THR A 253 LEU A 254 GLY A 255 SITE 3 AC1 16 ALA A 256 GLY A 257 PHE A 260 CYS A 282 SITE 4 AC1 16 GLY A 286 CYS A 289 HOH A 409 HOH A 429 SITE 1 AC2 7 GLN A 38 ARG A 39 ASP A 75 ARG A 79 SITE 2 AC2 7 PHE A 294 HOH A 414 HOH A 423 SITE 1 AC3 15 ALA B 226 GLU B 227 ALA B 244 PRO B 246 SITE 2 AC3 15 THR B 253 LEU B 254 GLY B 255 ALA B 256 SITE 3 AC3 15 GLY B 257 PHE B 260 GLY B 286 CYS B 289 SITE 4 AC3 15 HOH B 443 HOH B 467 HOH B 468 SITE 1 AC4 4 ARG A 31 HIS B 113 ARG B 141 LYS B 174 SITE 1 AC5 4 ARG B 78 ARG B 79 GLY B 293 PHE B 294 CRYST1 82.415 82.883 137.186 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007289 0.00000