HEADER TRANSFERASE 03-MAR-20 6W15 TITLE CRYSTAL STRUCTURE OF TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE WITH BOUND TITLE 2 SAH FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYSMA.00937.A.AE1; COMPND 5 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 6 EC: 2.1.1.228; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS (STRAIN ATCC 700084 SOURCE 3 / MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: TRMD, MSMEI_2377; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYSMA.00937.A.AE1 KEYWDS SSGCID, TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 6W15 1 REMARK REVDAT 1 06-MAY-20 6W15 0 JRNL AUTH D.M.DRANOW,M.J.BOLEJACK,J.A.ABENDROTH,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE JRNL TITL 2 WITH BOUND SAH FROM MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 14147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7900 - 4.3100 0.99 1420 149 0.1726 0.2135 REMARK 3 2 4.3000 - 3.4200 0.99 1325 143 0.1648 0.2277 REMARK 3 3 3.4200 - 2.9900 0.98 1285 123 0.2227 0.3014 REMARK 3 4 2.9900 - 2.7100 0.97 1274 124 0.2517 0.3278 REMARK 3 5 2.7100 - 2.5200 0.97 1253 135 0.2486 0.3266 REMARK 3 6 2.5200 - 2.3700 0.97 1229 131 0.2365 0.2688 REMARK 3 7 2.3700 - 2.2500 0.98 1251 130 0.2441 0.3439 REMARK 3 8 2.2500 - 2.1500 0.98 1243 139 0.2352 0.3097 REMARK 3 9 2.1500 - 2.0700 1.00 1254 150 0.2548 0.2975 REMARK 3 10 2.0700 - 2.0000 1.00 1240 149 0.2675 0.3233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1620 REMARK 3 ANGLE : 0.805 2211 REMARK 3 CHIRALITY : 0.052 249 REMARK 3 PLANARITY : 0.005 301 REMARK 3 DIHEDRAL : 18.074 603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4879 8.7543 9.3831 REMARK 3 T TENSOR REMARK 3 T11: 0.4156 T22: 0.3926 REMARK 3 T33: 0.3437 T12: -0.0954 REMARK 3 T13: -0.0691 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 8.7971 L22: 4.0954 REMARK 3 L33: 4.7239 L12: -1.9438 REMARK 3 L13: -6.4106 L23: 1.9165 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: -0.0417 S13: 0.3629 REMARK 3 S21: -0.1973 S22: 0.2374 S23: 0.0057 REMARK 3 S31: -0.9958 S32: 0.5036 S33: -0.3643 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0454 2.0061 9.1419 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.4942 REMARK 3 T33: 0.5172 T12: -0.0665 REMARK 3 T13: -0.0653 T23: -0.1636 REMARK 3 L TENSOR REMARK 3 L11: 7.9021 L22: 5.5160 REMARK 3 L33: 2.6341 L12: -5.2189 REMARK 3 L13: -3.3886 L23: 2.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.3389 S12: -0.6757 S13: 0.3467 REMARK 3 S21: 0.2460 S22: 0.5292 S23: -0.7809 REMARK 3 S31: -0.1177 S32: 0.7616 S33: -0.2494 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3292 -7.4684 9.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.3872 T22: 0.3010 REMARK 3 T33: 0.3644 T12: 0.0473 REMARK 3 T13: -0.0925 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.2600 L22: 4.4325 REMARK 3 L33: 4.4113 L12: -1.8570 REMARK 3 L13: -1.4386 L23: 2.2728 REMARK 3 S TENSOR REMARK 3 S11: -0.1937 S12: -0.5379 S13: 0.1217 REMARK 3 S21: 0.5442 S22: 0.4548 S23: -0.4799 REMARK 3 S31: 0.5215 S32: 0.6622 S33: -0.3634 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2760 -2.4049 9.6283 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.2465 REMARK 3 T33: 0.2393 T12: -0.0764 REMARK 3 T13: -0.0016 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.7802 L22: 4.1754 REMARK 3 L33: 3.5244 L12: -1.2219 REMARK 3 L13: -0.2477 L23: 1.8059 REMARK 3 S TENSOR REMARK 3 S11: -0.1460 S12: -0.2925 S13: -0.0640 REMARK 3 S21: 0.4407 S22: 0.2862 S23: -0.0070 REMARK 3 S31: 0.4533 S32: 0.0736 S33: -0.1499 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3575 8.6722 3.8496 REMARK 3 T TENSOR REMARK 3 T11: 0.3345 T22: 0.4255 REMARK 3 T33: 0.4687 T12: -0.0762 REMARK 3 T13: 0.0606 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 5.6261 L22: 0.0586 REMARK 3 L33: 3.5256 L12: -0.3131 REMARK 3 L13: 4.3593 L23: -0.1925 REMARK 3 S TENSOR REMARK 3 S11: -0.1975 S12: -0.0316 S13: -0.1012 REMARK 3 S21: 0.3053 S22: 0.3470 S23: 0.1017 REMARK 3 S31: -0.3646 S32: -0.2666 S33: -0.0583 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2451 21.6460 -9.2137 REMARK 3 T TENSOR REMARK 3 T11: 0.4948 T22: 0.8039 REMARK 3 T33: 0.5214 T12: 0.2778 REMARK 3 T13: 0.0523 T23: 0.1024 REMARK 3 L TENSOR REMARK 3 L11: 5.4449 L22: 2.3550 REMARK 3 L33: 1.6918 L12: 3.0124 REMARK 3 L13: -0.7810 L23: -1.3514 REMARK 3 S TENSOR REMARK 3 S11: 0.8507 S12: 1.0255 S13: 1.1918 REMARK 3 S21: -0.5570 S22: -0.4871 S23: 0.4975 REMARK 3 S31: -0.8803 S32: -0.1483 S33: -0.3857 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9898 4.7572 -2.5696 REMARK 3 T TENSOR REMARK 3 T11: 0.4696 T22: 0.7755 REMARK 3 T33: 0.5395 T12: -0.2248 REMARK 3 T13: -0.0041 T23: -0.1892 REMARK 3 L TENSOR REMARK 3 L11: 7.9792 L22: 4.4972 REMARK 3 L33: 1.1344 L12: -5.5561 REMARK 3 L13: -0.8386 L23: 0.8518 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: 0.7128 S13: -0.9807 REMARK 3 S21: 0.1468 S22: -0.3951 S23: 0.8522 REMARK 3 S31: 0.3777 S32: -0.6468 S33: 0.4213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 24.12 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 16.16 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZHI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.00937.A.AE1.PW38670 AT 19.05 REMARK 280 MG/ML, INCUBATED WITH 5 MM SAH, MIXED 1:1 WITH MCSG1(A10): 28% REMARK 280 (V/V) PPG P400, 0.1 M HEPES:NAOH, PH = 7.5, 0.2 M CACL2. TRAY: REMARK 280 311562A10. PUCK: DCP5-10., PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.27500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.63750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.91250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.63750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 158 REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 PRO A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 HIS A 166 REMARK 465 GLN A 167 REMARK 465 GLN A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 ALA A 226 REMARK 465 GLY A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 470 ASP A 225 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -140.30 57.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 DBREF 6W15 A 2 225 UNP I7FBD0 I7FBD0_MYCS2 2 225 SEQADV 6W15 MET A 0 UNP I7FBD0 INITIATING METHIONINE SEQADV 6W15 VAL A 1 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 ALA A 226 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 GLY A 227 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 228 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 229 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 230 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 231 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 232 UNP I7FBD0 EXPRESSION TAG SEQADV 6W15 HIS A 233 UNP I7FBD0 EXPRESSION TAG SEQRES 1 A 234 MET VAL ARG ILE ASP VAL ILE SER ILE PHE PRO ALA TYR SEQRES 2 A 234 LEU ASP PRO ILE ARG GLN SER LEU PRO GLY LYS ALA ILE SEQRES 3 A 234 ASP ALA GLY ILE VAL SER VAL GLU VAL HIS ASP LEU ARG SEQRES 4 A 234 ASN TRP THR HIS ASP VAL HIS ARG SER VAL ASP ASP SER SEQRES 5 A 234 PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS ALA PRO SEQRES 6 A 234 VAL TRP GLY GLU ALA LEU ASP GLU ILE CYS SER GLU GLU SEQRES 7 A 234 THR LEU LEU VAL VAL PRO THR PRO ALA GLY ARG LEU PHE SEQRES 8 A 234 ASP GLN ARG THR ALA GLN ARG TRP SER THR GLU ARG HIS SEQRES 9 A 234 LEU VAL PHE ALA CYS GLY ARG TYR GLU GLY ILE ASP GLN SEQRES 10 A 234 ARG VAL VAL ASP ASP ALA ALA ARG ARG MET ARG VAL GLU SEQRES 11 A 234 GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY GLU SEQRES 12 A 234 ALA ALA THR LEU VAL MET VAL GLU ALA VAL VAL ARG LEU SEQRES 13 A 234 LEU PRO ASP VAL LEU GLY ASN PRO ALA SER HIS GLN GLN SEQRES 14 A 234 ASP SER HIS SER ASP GLY LEU LEU GLU GLY PRO SER TYR SEQRES 15 A 234 THR ARG PRO PRO SER TRP ARG GLY LEU ASP VAL PRO PRO SEQRES 16 A 234 VAL LEU LEU SER GLY ASP HIS ALA LYS VAL ALA ALA TRP SEQRES 17 A 234 ARG HIS GLU GLN ALA LEU GLN ARG THR ARG GLU ARG ARG SEQRES 18 A 234 PRO ASP LEU LEU ASP ALA GLY HIS HIS HIS HIS HIS HIS HET SAH A 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *60(H2 O) HELIX 1 AA1 PHE A 9 GLN A 18 5 10 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 ASP A 91 THR A 100 1 10 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 140 ARG A 154 1 15 HELIX 7 AA7 PRO A 193 SER A 198 1 6 HELIX 8 AA8 ASP A 200 ARG A 220 1 21 HELIX 9 AA9 PRO A 221 ASP A 225 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 VAL A 1 SER A 7 1 N ILE A 3 O SER A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O PHE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 127 N LEU A 80 SHEET 6 AA1 6 ARG A 88 LEU A 89 1 N ARG A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 186 TRP A 187 0 SHEET 2 AA3 2 LEU A 190 ASP A 191 -1 O LEU A 190 N TRP A 187 CISPEP 1 ARG A 183 PRO A 184 0 2.18 SITE 1 AC1 19 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 19 TYR A 111 GLU A 112 GLY A 113 SER A 132 SITE 3 AC1 19 ILE A 133 GLY A 134 TYR A 136 LEU A 138 SITE 4 AC1 19 ASN A 139 GLY A 140 GLY A 141 ALA A 144 SITE 5 AC1 19 ARG A 154 HOH A 410 HOH A 415 CRYST1 59.100 59.100 114.550 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008730 0.00000