HEADER DNA BINDING PROTEIN/DNA 03-MAR-20 6W1A TITLE CRYSTAL STRUCTURE OF STREPTOCOCCUS DYSGALACTIAE SHP PHEROMONE RECEPTOR TITLE 2 RGG2 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (30-MER); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (30-MER); COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1334; SOURCE 4 GENE: MUTR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE; SOURCE 10 ORGANISM_TAXID: 1334; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE; SOURCE 14 ORGANISM_TAXID: 1334 KEYWDS PHEROMONE BINDING, QUORUM SENSING, DNA BINDING PROTEIN, RRNPP, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,M.B.NEIDITCH REVDAT 3 18-OCT-23 6W1A 1 REMARK REVDAT 2 16-MAR-22 6W1A 1 REMARK REVDAT 1 21-OCT-20 6W1A 0 JRNL AUTH G.C.CAPODAGLI,K.M.TYLOR,J.T.KAELBER,V.I.PETROU,M.J.FEDERLE, JRNL AUTH 2 M.B.NEIDITCH JRNL TITL STRUCTURE-FUNCTION STUDIES OF RGG BINDING TO PHEROMONES AND JRNL TITL 2 TARGET PROMOTERS REVEAL A MODEL OF TRANSCRIPTION FACTOR JRNL TITL 3 INTERPLAY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 24494 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32907945 JRNL DOI 10.1073/PNAS.2008427117 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5700 - 6.7389 0.99 1991 144 0.1608 0.1993 REMARK 3 2 6.7389 - 5.3509 1.00 1971 149 0.2351 0.2758 REMARK 3 3 5.3509 - 4.6751 1.00 1953 145 0.2104 0.2421 REMARK 3 4 4.6751 - 4.2479 1.00 1956 145 0.2056 0.2220 REMARK 3 5 4.2479 - 3.9436 1.00 1979 143 0.2237 0.2532 REMARK 3 6 3.9436 - 3.7112 1.00 1979 141 0.2535 0.3491 REMARK 3 7 3.7112 - 3.5254 1.00 1954 141 0.2729 0.2656 REMARK 3 8 3.5254 - 3.3719 1.00 1973 144 0.3057 0.2994 REMARK 3 9 3.3719 - 3.2421 1.00 1946 139 0.3209 0.3355 REMARK 3 10 3.2421 - 3.1303 1.00 1973 142 0.3128 0.3760 REMARK 3 11 3.1303 - 3.0324 1.00 1953 142 0.3388 0.3548 REMARK 3 12 3.0324 - 2.9458 1.00 1955 142 0.3431 0.4301 REMARK 3 13 2.9458 - 2.8682 1.00 1990 145 0.3466 0.3347 REMARK 3 14 2.8682 - 2.8000 1.00 1948 140 0.3575 0.3554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.8484 53.9718 -15.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 0.6777 REMARK 3 T33: 1.1907 T12: -0.0086 REMARK 3 T13: -0.0639 T23: 0.2366 REMARK 3 L TENSOR REMARK 3 L11: 0.5421 L22: 0.3841 REMARK 3 L33: 2.1316 L12: 0.1220 REMARK 3 L13: 0.2479 L23: 0.6264 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: 0.1645 S13: 0.9177 REMARK 3 S21: -0.0679 S22: 0.0602 S23: 0.7013 REMARK 3 S31: 0.0915 S32: 0.4227 S33: -0.0070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4957 44.4837 -17.2843 REMARK 3 T TENSOR REMARK 3 T11: 0.6643 T22: 0.9798 REMARK 3 T33: 0.3491 T12: -0.1053 REMARK 3 T13: 0.0473 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.1894 L22: 0.4966 REMARK 3 L33: 0.6758 L12: 0.6593 REMARK 3 L13: 0.1327 L23: 0.2874 REMARK 3 S TENSOR REMARK 3 S11: -0.4603 S12: 1.3428 S13: 0.3734 REMARK 3 S21: -0.5675 S22: 0.3091 S23: 0.1998 REMARK 3 S31: -0.3972 S32: 0.1583 S33: -0.0677 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1099 39.8733 5.1918 REMARK 3 T TENSOR REMARK 3 T11: 0.5598 T22: 0.5876 REMARK 3 T33: 0.3385 T12: -0.0129 REMARK 3 T13: -0.0309 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 1.1991 L22: 1.0933 REMARK 3 L33: 1.9107 L12: 0.2230 REMARK 3 L13: 0.4963 L23: 0.5485 REMARK 3 S TENSOR REMARK 3 S11: 0.1867 S12: -0.0718 S13: 0.0822 REMARK 3 S21: 0.3542 S22: -0.1792 S23: -0.0281 REMARK 3 S31: 0.1137 S32: 0.1238 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3681 22.8959 1.4754 REMARK 3 T TENSOR REMARK 3 T11: 0.8978 T22: 1.0592 REMARK 3 T33: 0.6977 T12: 0.1552 REMARK 3 T13: -0.0811 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.1290 L22: 0.2436 REMARK 3 L33: 0.1137 L12: -0.1772 REMARK 3 L13: 0.1222 L23: -0.1799 REMARK 3 S TENSOR REMARK 3 S11: -0.6419 S12: 0.5277 S13: -0.7544 REMARK 3 S21: -0.2487 S22: -0.1877 S23: -0.9486 REMARK 3 S31: 0.4154 S32: 1.2533 S33: -0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8484 65.9310 -7.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.5992 T22: 0.8199 REMARK 3 T33: 1.1241 T12: -0.1309 REMARK 3 T13: -0.1188 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.1537 L22: 0.1403 REMARK 3 L33: 0.2071 L12: 0.0722 REMARK 3 L13: -0.1307 L23: 0.2270 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: 0.2414 S13: 1.2959 REMARK 3 S21: -0.1957 S22: -0.1164 S23: 0.0550 REMARK 3 S31: -0.4319 S32: 1.2856 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2885 62.2793 -7.3192 REMARK 3 T TENSOR REMARK 3 T11: 0.4836 T22: 0.6229 REMARK 3 T33: 1.1334 T12: 0.0061 REMARK 3 T13: -0.1683 T23: 0.2572 REMARK 3 L TENSOR REMARK 3 L11: 0.7559 L22: 0.4596 REMARK 3 L33: 3.2736 L12: 0.1839 REMARK 3 L13: -1.4851 L23: -0.4987 REMARK 3 S TENSOR REMARK 3 S11: -0.7189 S12: 0.4846 S13: 0.4134 REMARK 3 S21: -0.2139 S22: 0.4060 S23: 0.1496 REMARK 3 S31: 0.6608 S32: -0.5372 S33: -0.2948 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.3312 38.6257 2.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.6912 T22: 0.6115 REMARK 3 T33: 0.7944 T12: -0.0582 REMARK 3 T13: 0.5121 T23: -0.3236 REMARK 3 L TENSOR REMARK 3 L11: 1.8498 L22: 1.9921 REMARK 3 L33: 1.3125 L12: 1.4345 REMARK 3 L13: 0.5202 L23: -0.3041 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.1318 S13: 1.7004 REMARK 3 S21: 0.2899 S22: -0.2143 S23: 1.6704 REMARK 3 S31: 0.3553 S32: -0.0466 S33: 0.1126 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.3502 21.3178 -1.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.8757 T22: 0.5306 REMARK 3 T33: 0.4039 T12: -0.0334 REMARK 3 T13: -0.0024 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.1808 L22: 0.8685 REMARK 3 L33: 1.0200 L12: 0.1316 REMARK 3 L13: 0.5707 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.4691 S12: 0.0709 S13: 0.0105 REMARK 3 S21: 0.0911 S22: -0.4456 S23: 0.1315 REMARK 3 S31: 0.4440 S32: 0.0145 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 4 THROUGH 185 OR REMARK 3 RESID 187 THROUGH 197 OR RESID 199 REMARK 3 THROUGH 211 OR RESID 213 THROUGH 263 OR REMARK 3 RESID 265 THROUGH 276)) REMARK 3 SELECTION : (CHAIN B AND (RESID 4 THROUGH 185 OR REMARK 3 RESID 187 THROUGH 197 OR RESID 199 REMARK 3 THROUGH 211 OR RESID 213 THROUGH 263 OR REMARK 3 RESID 265 THROUGH 276)) REMARK 3 ATOM PAIRS NUMBER : 1610 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000244437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.18076 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRILITHIUM CITRATE AND 24% PEG REMARK 280 3,350, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.98933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.99467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.99200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.99733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 144.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 277 REMARK 465 GLU A 278 REMARK 465 GLU A 279 REMARK 465 ASP A 280 REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 GLY A 284 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 277 REMARK 465 GLU B 278 REMARK 465 GLU B 279 REMARK 465 ASP B 280 REMARK 465 GLU B 281 REMARK 465 GLU B 282 REMARK 465 GLU B 283 REMARK 465 GLY B 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 11 O THR A 65 2.03 REMARK 500 OG SER A 34 OP2 DT E 8 2.15 REMARK 500 OH TYR A 233 OE1 GLU A 273 2.16 REMARK 500 O ASP B 60 OG SER B 64 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 275 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LYS B 244 CB - CG - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 LYS B 244 CG - CD - CE ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS B 244 CD - CE - NZ ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 -167.81 -162.72 REMARK 500 SER A 29 153.59 -47.01 REMARK 500 HIS A 66 -72.50 -69.04 REMARK 500 LYS A 87 19.37 58.06 REMARK 500 GLU A 117 98.22 -161.29 REMARK 500 SER A 170 40.54 -151.18 REMARK 500 SER A 199 55.72 39.96 REMARK 500 LEU A 219 -78.71 -83.11 REMARK 500 VAL A 274 -40.63 -137.50 REMARK 500 ASP B 25 -168.43 -160.85 REMARK 500 SER B 31 -82.91 -49.02 REMARK 500 SER B 44 150.67 -47.29 REMARK 500 LYS B 87 19.61 55.37 REMARK 500 GLU B 117 94.88 -162.31 REMARK 500 SER B 170 43.42 -151.34 REMARK 500 VAL B 274 -51.42 -133.36 REMARK 500 LEU B 275 -117.58 -105.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YV6 RELATED DB: PDB REMARK 900 SAME PROTEIN, NOT BOUND TO DNA DBREF1 6W1A A 1 284 UNP A0A0J9X288_STRDY DBREF2 6W1A A A0A0J9X288 1 284 DBREF1 6W1A B 1 284 UNP A0A0J9X288_STRDY DBREF2 6W1A B A0A0J9X288 1 284 DBREF 6W1A E 1 30 PDB 6W1A 6W1A 1 30 DBREF 6W1A F 1 30 PDB 6W1A 6W1A 1 30 SEQRES 1 A 284 MET ASP LYS GLU LEU GLY LYS THR LEU ARG ARG LEU ARG SEQRES 2 A 284 GLN GLY LYS GLN VAL SER ILE SER SER LEU ALA ASP GLU SEQRES 3 A 284 HIS LEU SER LYS SER GLN ILE SER ARG PHE GLU ARG GLY SEQRES 4 A 284 GLU SER GLU ILE SER CYS SER ARG LEU LEU ASN LEU LEU SEQRES 5 A 284 ASP LYS LEU ASN ILE THR ILE ASP GLU PHE VAL SER THR SEQRES 6 A 284 HIS SER LYS THR HIS THR HIS PHE PHE THR LEU LEU SER SEQRES 7 A 284 ARG VAL ARG LYS TYR TYR ALA GLU LYS ASN VAL ALA LYS SEQRES 8 A 284 LEU LEU LYS LEU LEU GLU ASP TYR ALA HIS LYS ASP TYR SEQRES 9 A 284 GLU SER THR MET ILE LYS ALA ILE LEU SER SER ILE GLU SEQRES 10 A 284 PRO THR VAL GLU PRO SER GLU GLU GLU VAL THR ARG LEU SEQRES 11 A 284 THR ASP TYR LEU PHE SER VAL GLU GLN TRP GLY TYR TYR SEQRES 12 A 284 GLU ILE ILE LEU LEU GLY ASN CYS SER ARG PHE ILE ASN SEQRES 13 A 284 TYR ASN THR LEU PHE LEU LEU THR LYS GLU MET VAL THR SEQRES 14 A 284 SER PHE ALA TYR SER GLU GLN ASN LYS THR ASN LYS THR SEQRES 15 A 284 LEU VAL THR GLN LEU SER ILE ASN CYS LEU ILE ILE SER SEQRES 16 A 284 ILE ASP TYR SER TYR PHE ASP HIS SER HIS TYR LEU ILE SEQRES 17 A 284 GLU LYS ILE GLU PHE LEU LEU ARG ASP GLU LEU ASN PHE SEQRES 18 A 284 TYR GLU LYS THR VAL PHE LEU TYR VAL HIS GLY TYR TYR SEQRES 19 A 284 LYS LEU LYS GLN GLY GLN VAL SER GLY LYS ASP ASP MET SEQRES 20 A 284 ARG GLN ALA LEU GLN ILE PHE LYS TYR LEU GLY GLU ASP SEQRES 21 A 284 ALA LEU TYR TYR SER TYR LYS GLU HIS TYR ARG LYS GLU SEQRES 22 A 284 VAL LEU GLY ASP GLU GLU ASP GLU GLU GLU GLY SEQRES 1 B 284 MET ASP LYS GLU LEU GLY LYS THR LEU ARG ARG LEU ARG SEQRES 2 B 284 GLN GLY LYS GLN VAL SER ILE SER SER LEU ALA ASP GLU SEQRES 3 B 284 HIS LEU SER LYS SER GLN ILE SER ARG PHE GLU ARG GLY SEQRES 4 B 284 GLU SER GLU ILE SER CYS SER ARG LEU LEU ASN LEU LEU SEQRES 5 B 284 ASP LYS LEU ASN ILE THR ILE ASP GLU PHE VAL SER THR SEQRES 6 B 284 HIS SER LYS THR HIS THR HIS PHE PHE THR LEU LEU SER SEQRES 7 B 284 ARG VAL ARG LYS TYR TYR ALA GLU LYS ASN VAL ALA LYS SEQRES 8 B 284 LEU LEU LYS LEU LEU GLU ASP TYR ALA HIS LYS ASP TYR SEQRES 9 B 284 GLU SER THR MET ILE LYS ALA ILE LEU SER SER ILE GLU SEQRES 10 B 284 PRO THR VAL GLU PRO SER GLU GLU GLU VAL THR ARG LEU SEQRES 11 B 284 THR ASP TYR LEU PHE SER VAL GLU GLN TRP GLY TYR TYR SEQRES 12 B 284 GLU ILE ILE LEU LEU GLY ASN CYS SER ARG PHE ILE ASN SEQRES 13 B 284 TYR ASN THR LEU PHE LEU LEU THR LYS GLU MET VAL THR SEQRES 14 B 284 SER PHE ALA TYR SER GLU GLN ASN LYS THR ASN LYS THR SEQRES 15 B 284 LEU VAL THR GLN LEU SER ILE ASN CYS LEU ILE ILE SER SEQRES 16 B 284 ILE ASP TYR SER TYR PHE ASP HIS SER HIS TYR LEU ILE SEQRES 17 B 284 GLU LYS ILE GLU PHE LEU LEU ARG ASP GLU LEU ASN PHE SEQRES 18 B 284 TYR GLU LYS THR VAL PHE LEU TYR VAL HIS GLY TYR TYR SEQRES 19 B 284 LYS LEU LYS GLN GLY GLN VAL SER GLY LYS ASP ASP MET SEQRES 20 B 284 ARG GLN ALA LEU GLN ILE PHE LYS TYR LEU GLY GLU ASP SEQRES 21 B 284 ALA LEU TYR TYR SER TYR LYS GLU HIS TYR ARG LYS GLU SEQRES 22 B 284 VAL LEU GLY ASP GLU GLU ASP GLU GLU GLU GLY SEQRES 1 E 30 DC DC DA DT DT DT DT DT DC DC DC DA DC SEQRES 2 E 30 DT DT DT DC DA DC DA DA DC DA DA DA DA SEQRES 3 E 30 DA DA DT DT SEQRES 1 F 30 DT DT DT DT DT DT DG DT DT DG DT DG DA SEQRES 2 F 30 DA DA DG DT DG DG DG DA DA DA DA DA DT SEQRES 3 F 30 DG DG DA DA HET PO4 A 301 5 HET GOL A 302 6 HET GOL A 303 6 HET PO4 B 301 5 HET GOL B 302 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 10 HOH *19(H2 O) HELIX 1 AA1 GLU A 4 LYS A 16 1 13 HELIX 2 AA2 SER A 31 GLU A 37 1 7 HELIX 3 AA3 SER A 44 LEU A 55 1 12 HELIX 4 AA4 THR A 58 SER A 67 1 10 HELIX 5 AA5 THR A 71 GLU A 86 1 16 HELIX 6 AA6 ASN A 88 TYR A 99 1 12 HELIX 7 AA7 LYS A 102 GLU A 117 1 16 HELIX 8 AA8 SER A 123 VAL A 137 1 15 HELIX 9 AA9 GLY A 141 CYS A 151 1 11 HELIX 10 AB1 ASN A 156 SER A 170 1 15 HELIX 11 AB2 LYS A 178 TYR A 198 1 21 HELIX 12 AB3 TYR A 200 ARG A 216 1 17 HELIX 13 AB4 ASN A 220 GLN A 238 1 19 HELIX 14 AB5 VAL A 241 LEU A 257 1 17 HELIX 15 AB6 GLU A 259 GLU A 273 1 15 HELIX 16 AB7 LEU B 5 LYS B 16 1 12 HELIX 17 AB8 SER B 29 GLU B 37 1 9 HELIX 18 AB9 SER B 44 ASN B 56 1 13 HELIX 19 AC1 THR B 58 SER B 64 1 7 HELIX 20 AC2 THR B 71 GLU B 86 1 16 HELIX 21 AC3 VAL B 89 TYR B 99 1 11 HELIX 22 AC4 LYS B 102 GLU B 117 1 16 HELIX 23 AC5 SER B 123 VAL B 137 1 15 HELIX 24 AC6 GLY B 141 CYS B 151 1 11 HELIX 25 AC7 ASN B 156 SER B 170 1 15 HELIX 26 AC8 LYS B 178 TYR B 198 1 21 HELIX 27 AC9 TYR B 200 ARG B 216 1 17 HELIX 28 AD1 ASN B 220 GLN B 238 1 19 HELIX 29 AD2 VAL B 241 LEU B 257 1 17 HELIX 30 AD3 GLU B 259 GLU B 273 1 15 SSBOND 1 CYS A 45 CYS B 45 1555 1555 2.14 SITE 1 AC1 2 HIS A 72 HIS A 101 SITE 1 AC2 2 TYR A 222 LEU B 219 SITE 1 AC3 2 LYS A 82 TYR A 83 SITE 1 AC4 7 PHE A 161 ASP A 202 HIS A 203 TYR A 206 SITE 2 AC4 7 PHE B 201 TYR B 234 GLN B 238 SITE 1 AC5 2 SER B 265 TYR B 266 CRYST1 110.269 110.269 173.984 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009069 0.005236 0.000000 0.00000 SCALE2 0.000000 0.010472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005748 0.00000