HEADER LYASE 04-MAR-20 6W1G TITLE CRYSTAL STRUCTURE OF THE HYDROXYGLUTARATE SYNTHASE FROM PSEUDOMONAS TITLE 2 PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYGLUTARATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: YDCJ, PP_5260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DECARBOXYLASE LYSINE CATABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,M.G.THOMPSON,J.M.BLAKE-HEDGES,J.D.KEASLING,P.D.ADAMS REVDAT 2 18-OCT-23 6W1G 1 REMARK REVDAT 1 24-JUN-20 6W1G 0 JRNL AUTH M.G.THOMPSON,J.M.BLAKE-HEDGES,J.H.PEREIRA,J.A.HANGASKY, JRNL AUTH 2 M.S.BELCHER,W.M.MOORE,J.F.BARAJAS,P.CRUZ-MORALES, JRNL AUTH 3 L.J.WASHINGTON,R.W.HAUSHALTER,C.B.EIBEN,Y.LIU,W.SKYRUD, JRNL AUTH 4 V.T.BENITES,T.P.BARNUM,E.E.K.BAIDOO,H.V.SCHELLER, JRNL AUTH 5 M.A.MARLETTA,P.M.SHIH,P.D.ADAMS,J.D.KEASLING JRNL TITL AN IRON (II) DEPENDENT OXYGENASE PERFORMS THE LAST MISSING JRNL TITL 2 STEP OF PLANT LYSINE CATABOLISM. JRNL REF NAT COMMUN V. 11 2931 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32523014 JRNL DOI 10.1038/S41467-020-16815-3 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 164046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 8263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3800 - 3.5400 1.00 5565 293 0.1652 0.1652 REMARK 3 2 3.5400 - 2.8100 1.00 5342 282 0.1549 0.1769 REMARK 3 3 2.8100 - 2.4600 1.00 5311 281 0.1413 0.1631 REMARK 3 4 2.4600 - 2.2300 1.00 5221 295 0.1275 0.1584 REMARK 3 5 2.2300 - 2.0700 1.00 5281 281 0.1236 0.1571 REMARK 3 6 2.0700 - 1.9500 1.00 5244 250 0.1181 0.1384 REMARK 3 7 1.9500 - 1.8500 1.00 5212 255 0.1187 0.1426 REMARK 3 8 1.8500 - 1.7700 1.00 5223 271 0.1087 0.1414 REMARK 3 9 1.7700 - 1.7000 1.00 5202 277 0.1046 0.1399 REMARK 3 10 1.7000 - 1.6400 1.00 5204 265 0.1031 0.1317 REMARK 3 11 1.6400 - 1.5900 1.00 5189 284 0.1016 0.1434 REMARK 3 12 1.5900 - 1.5500 1.00 5152 289 0.1029 0.1446 REMARK 3 13 1.5500 - 1.5100 1.00 5161 304 0.1030 0.1436 REMARK 3 14 1.5100 - 1.4700 1.00 5153 282 0.1095 0.1452 REMARK 3 15 1.4700 - 1.4400 1.00 5183 274 0.1160 0.1570 REMARK 3 16 1.4400 - 1.4100 1.00 5159 301 0.1283 0.1740 REMARK 3 17 1.4100 - 1.3800 1.00 5129 271 0.1382 0.1847 REMARK 3 18 1.3800 - 1.3500 1.00 5150 293 0.1459 0.1949 REMARK 3 19 1.3500 - 1.3300 1.00 5158 246 0.1529 0.1754 REMARK 3 20 1.3300 - 1.3000 1.00 5174 291 0.1569 0.1863 REMARK 3 21 1.3000 - 1.2800 1.00 5108 274 0.1846 0.2022 REMARK 3 22 1.2800 - 1.2600 1.00 5182 283 0.1759 0.2000 REMARK 3 23 1.2600 - 1.2500 1.00 5157 249 0.1860 0.2249 REMARK 3 24 1.2500 - 1.2300 1.00 5163 271 0.1941 0.2054 REMARK 3 25 1.2300 - 1.2100 1.00 5103 263 0.2050 0.2237 REMARK 3 26 1.2100 - 1.2000 1.00 5197 289 0.2060 0.2355 REMARK 3 27 1.2000 - 1.1800 1.00 5129 249 0.2177 0.2237 REMARK 3 28 1.1800 - 1.1700 1.00 5200 256 0.2252 0.2765 REMARK 3 29 1.1700 - 1.1500 1.00 5077 255 0.2365 0.2609 REMARK 3 30 1.1500 - 1.1400 0.97 5054 289 0.2605 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.103 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.721 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3545 REMARK 3 ANGLE : 1.225 4826 REMARK 3 CHIRALITY : 0.184 540 REMARK 3 PLANARITY : 0.009 647 REMARK 3 DIHEDRAL : 18.199 1332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 164046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 52.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2RJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, 20 % PEG REMARK 280 3,350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.22450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.38250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.37300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.38250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.22450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.37300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 279 REMARK 465 ASP A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 GLY A 283 REMARK 465 ARG A 284 REMARK 465 GLU A 285 REMARK 465 GLY A 286 REMARK 465 ALA A 405 REMARK 465 GLY A 406 REMARK 465 ILE A 407 REMARK 465 PHE A 408 REMARK 465 GLN A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 LEU A 412 REMARK 465 GLY A 413 REMARK 465 ASP A 414 REMARK 465 ASP A 415 REMARK 465 ALA A 416 REMARK 465 GLN A 417 REMARK 465 ALA A 418 REMARK 465 GLU A 419 REMARK 465 TYR A 420 REMARK 465 GLY A 421 REMARK 465 GLY A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 243 O HOH A 1111 1655 1.85 REMARK 500 O HOH A 1094 O HOH A 1165 2565 1.88 REMARK 500 O HOH A 610 O HOH A 1197 1655 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 175 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 227 CB - CG - CD1 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 352 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 352 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 263 -123.54 53.30 REMARK 500 ASP A 398 -151.45 -109.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1238 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1239 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1242 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1243 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1244 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1245 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1246 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1247 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1248 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1249 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1250 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1251 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A1252 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1253 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A1254 DISTANCE = 7.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HIS A 226 NE2 104.5 REMARK 620 3 GLU A 294 OE1 87.3 91.2 REMARK 620 4 HOH A 618 O 162.0 93.3 95.1 REMARK 620 5 HOH A 929 O 89.4 163.9 97.6 72.6 REMARK 620 6 HOH A 977 O 98.8 91.0 172.8 77.9 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 500 DBREF 6W1G A 1 464 UNP Q88CC1 Q88CC1_PSEPK 1 464 SEQRES 1 A 464 MET PRO ALA ASN ASP PHE VAL SER PRO ASP SER ILE ARG SEQRES 2 A 464 ALA GLN PHE SER ALA ALA MET SER LEU MET TYR LYS GLN SEQRES 3 A 464 GLU VAL PRO LEU TYR GLY THR LEU LEU GLU LEU VAL SER SEQRES 4 A 464 GLU ILE ASN GLN GLN VAL MET ALA GLN GLN PRO GLU VAL SEQRES 5 A 464 ALA GLU ALA LEU ARG TRP THR GLY GLU ILE GLU ARG LEU SEQRES 6 A 464 ASP GLN GLU ARG HIS GLY ALA ILE ARG VAL GLY THR ALA SEQRES 7 A 464 GLU GLU LEU ALA THR ILE ALA ARG LEU PHE ALA VAL MET SEQRES 8 A 464 GLY MET GLN PRO VAL GLY TYR TYR ASP LEU SER SER ALA SEQRES 9 A 464 GLY VAL PRO VAL HIS SER THR ALA PHE ARG ALA VAL HIS SEQRES 10 A 464 GLU GLN SER LEU HIS VAL SER PRO PHE ARG VAL PHE THR SEQRES 11 A 464 SER LEU LEU ARG LEU GLU LEU ILE ASP ASN PRO GLN LEU SEQRES 12 A 464 ARG GLU LEU ALA GLN SER ILE LEU ALA LYS ARG GLN ILE SEQRES 13 A 464 PHE THR SER ARG ALA LEU GLU LEU ILE ALA GLN CYS GLU SEQRES 14 A 464 ARG GLU GLY GLY LEU ASP ALA ALA ASP ALA GLU THR PHE SEQRES 15 A 464 VAL GLN GLU ALA LEU HIS THR PHE ARG TRP HIS GLN ASP SEQRES 16 A 464 ALA THR VAL THR ALA GLU GLN TYR GLN GLN LEU HIS ASP SEQRES 17 A 464 GLN HIS ARG LEU ILE ALA ASP VAL VAL ALA PHE LYS GLY SEQRES 18 A 464 PRO HIS ILE ASN HIS LEU THR PRO ARG THR LEU ASP ILE SEQRES 19 A 464 ASP ALA ILE GLN LEU GLY MET PRO ALA LYS GLY ILE PRO SEQRES 20 A 464 PRO LYS ALA VAL VAL GLU GLY PRO PRO THR ARG ARG HIS SEQRES 21 A 464 PRO ILE LEU LEU ARG GLN THR SER PHE LYS ALA LEU GLN SEQRES 22 A 464 GLU THR VAL ALA PHE ARG ASP GLN GLN GLY ARG GLU GLY SEQRES 23 A 464 SER HIS THR ALA ARG PHE GLY GLU ILE GLU GLN ARG GLY SEQRES 24 A 464 ALA ALA LEU THR PRO LYS GLY ARG GLN LEU TYR ASP LYS SEQRES 25 A 464 LEU LEU ASP ALA THR ARG VAL ALA LEU GLY GLY ALA PRO SEQRES 26 A 464 ALA GLU ALA ASN ALA GLU ARG TYR MET ALA LEU LEU GLN SEQRES 27 A 464 ALA ASN PHE ALA GLU PHE PRO ASP ASP LEU ALA GLN MET SEQRES 28 A 464 ARG GLU GLN GLY LEU ALA TYR PHE ARG TYR PHE ALA THR SEQRES 29 A 464 GLU LYS GLY LEU ALA ALA ARG ASP GLN GLU GLY ARG PRO SEQRES 30 A 464 THR THR LEU GLN GLY LEU ILE ASP ALA GLY HIS VAL HIS SEQRES 31 A 464 PHE GLU ALA LEU VAL TYR GLU ASP PHE LEU PRO VAL SER SEQRES 32 A 464 ALA ALA GLY ILE PHE GLN SER ASN LEU GLY ASP ASP ALA SEQRES 33 A 464 GLN ALA GLU TYR GLY SER ASN ALA ASN ARG GLU ALA PHE SEQRES 34 A 464 GLU ALA ALA LEU GLY LEU GLN VAL GLN ASP GLU LEU ALA SEQRES 35 A 464 LEU TYR ALA GLN SER GLU ARG ARG SER LEU GLN ALA CYS SEQRES 36 A 464 ALA GLN ALA LEU ASN LEU GLY SER MET HET NI A 500 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *654(H2 O) HELIX 1 AA1 SER A 8 VAL A 28 1 21 HELIX 2 AA2 VAL A 28 GLN A 49 1 22 HELIX 3 AA3 GLN A 49 GLY A 60 1 12 HELIX 4 AA4 GLY A 60 LEU A 65 1 6 HELIX 5 AA5 THR A 77 MET A 91 1 15 HELIX 6 AA6 SER A 102 GLY A 105 5 4 HELIX 7 AA7 HIS A 117 SER A 124 1 8 HELIX 8 AA8 ASN A 140 ARG A 154 1 15 HELIX 9 AA9 THR A 158 GLY A 172 1 15 HELIX 10 AB1 ASP A 175 THR A 189 1 15 HELIX 11 AB2 THR A 199 HIS A 210 1 12 HELIX 12 AB3 HIS A 210 ALA A 218 1 9 HELIX 13 AB4 ASP A 233 MET A 241 1 9 HELIX 14 AB5 PRO A 242 GLY A 245 5 4 HELIX 15 AB6 THR A 303 GLY A 322 1 20 HELIX 16 AB7 ALA A 326 ALA A 328 5 3 HELIX 17 AB8 ASN A 329 ALA A 342 1 14 HELIX 18 AB9 ASP A 347 GLN A 354 1 8 HELIX 19 AC1 THR A 364 ALA A 370 1 7 HELIX 20 AC2 THR A 379 ALA A 386 1 8 HELIX 21 AC3 ASN A 423 GLY A 434 1 12 HELIX 22 AC4 ASP A 439 LEU A 459 1 21 SHEET 1 AA1 5 GLN A 94 ASP A 100 0 SHEET 2 AA1 5 VAL A 108 ARG A 114 -1 O ALA A 112 N VAL A 96 SHEET 3 AA1 5 ARG A 127 LEU A 133 -1 O LEU A 132 N HIS A 109 SHEET 4 AA1 5 ARG A 69 VAL A 75 1 N VAL A 75 O SER A 131 SHEET 5 AA1 5 HIS A 226 PRO A 229 -1 O THR A 228 N HIS A 70 SHEET 1 AA2 2 LEU A 264 THR A 275 0 SHEET 2 AA2 2 HIS A 288 ARG A 298 -1 O ARG A 291 N LEU A 272 SHEET 1 AA3 2 PHE A 359 ALA A 363 0 SHEET 2 AA3 2 VAL A 389 ALA A 393 -1 O GLU A 392 N ARG A 360 LINK NE2 HIS A 70 NI NI A 500 1555 1555 2.10 LINK NE2 HIS A 226 NI NI A 500 1555 1555 2.05 LINK OE1 GLU A 294 NI NI A 500 1555 1555 2.07 LINK NI NI A 500 O HOH A 618 1555 1555 2.28 LINK NI NI A 500 O HOH A 929 1555 1555 2.04 LINK NI NI A 500 O HOH A 977 1555 1555 2.15 SITE 1 AC1 6 HIS A 70 HIS A 226 GLU A 294 HOH A 618 SITE 2 AC1 6 HOH A 929 HOH A 977 CRYST1 42.449 100.746 104.765 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009545 0.00000