HEADER TRANSFERASE 06-MAR-20 6W2L TITLE CRYSTAL STRUCTURE OF HUMAN DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE TITLE 2 (NGBR/DHDDS) IN COMPLEX WITH MG AND IPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CIS-ISOPRENYLTRANSFERASE,CIS-IPTASE,CIS-PRENYLTRANSFERASE COMPND 5 SUBUNIT HCIT,EPIDIDYMIS TISSUE PROTEIN LI 189M; COMPND 6 EC: 2.5.1.87; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT NUS1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CIS-PRENYLTRANSFERASE SUBUNIT NGBR,NOGO-B RECEPTOR,NGBR, COMPND 12 NUCLEAR UNDECAPRENYL PYROPHOSPHATE SYNTHASE 1 HOMOLOG; COMPND 13 EC: 2.5.1.87; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHDDS, HDS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: NUS1, C6ORF68, NGBR; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET1 KEYWDS CIS-PRENYLTRANSFERASE, DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.H.EDANI,Y.HA,W.C.SESSA REVDAT 4 18-OCT-23 6W2L 1 REMARK REVDAT 3 09-SEP-20 6W2L 1 JRNL REVDAT 2 02-SEP-20 6W2L 1 JRNL REVDAT 1 19-AUG-20 6W2L 0 JRNL AUTH B.H.EDANI,K.A.GRABINSKA,R.ZHANG,E.J.PARK,B.SICILIANO, JRNL AUTH 2 L.SURMACZ,Y.HA,W.C.SESSA JRNL TITL STRUCTURAL ELUCIDATION OF THECIS-PRENYLTRANSFERASE JRNL TITL 2 NGBR/DHDDS COMPLEX REVEALS INSIGHTS IN REGULATION OF PROTEIN JRNL TITL 3 GLYCOSYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 20794 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32817466 JRNL DOI 10.1073/PNAS.2008381117 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 31367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.136 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3900 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74300 REMARK 3 B22 (A**2) : -1.74300 REMARK 3 B33 (A**2) : 5.65400 REMARK 3 B12 (A**2) : -0.87100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4003 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5443 ; 1.133 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 6.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;36.659 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;19.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.542 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3053 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1846 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2673 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2087 ; 4.630 ; 7.882 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2600 ; 6.966 ;11.802 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 5.353 ; 7.771 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2843 ; 7.911 ;11.553 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6W2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.306 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1X06, 6JCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 MM MGCL2, 3.3 MM IPP, 0.1 M REMARK 280 BICINE, 10% V/V 2-PROPANOL, 22% PEG 1500, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 92.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.59831 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.78367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 92.83500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.59831 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.78367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 92.83500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.59831 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.78367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 92.83500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 53.59831 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.78367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 92.83500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 53.59831 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.78367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 92.83500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 53.59831 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.78367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 107.19662 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.56733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 107.19662 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.56733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 107.19662 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.56733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 107.19662 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.56733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 107.19662 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.56733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 107.19662 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.56733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 288 REMARK 465 SER A 289 REMARK 465 GLU B 111 REMARK 465 PRO B 112 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 LEU B 162 REMARK 465 ASP B 163 REMARK 465 CYS B 164 REMARK 465 SER B 165 REMARK 465 LYS B 166 REMARK 465 TYR B 167 REMARK 465 SER B 168 REMARK 465 PRO B 169 REMARK 465 GLU B 170 REMARK 465 PHE B 171 REMARK 465 ALA B 172 REMARK 465 ASN B 173 REMARK 465 SER B 174 REMARK 465 ASN B 175 REMARK 465 ASP B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ILE A 20 CD1 REMARK 470 MET A 25 CE REMARK 470 LYS A 27 CE NZ REMARK 470 MET A 33 CE REMARK 470 ARG A 63 CZ NH1 NH2 REMARK 470 LEU A 66 CD1 CD2 REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 SER A 79 OG REMARK 470 LYS A 84 CE NZ REMARK 470 SER A 102 OG REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 104 CD1 CD2 REMARK 470 MET A 105 CG SD CE REMARK 470 GLU A 106 CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 113 CD CE NZ REMARK 470 ILE A 118 CD1 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 GLN A 140 CG CD OE1 NE2 REMARK 470 LYS A 143 CE NZ REMARK 470 ASN A 144 CG OD1 ND2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 CYS A 148 SG REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 PRO A 180 CB CG CD REMARK 470 SER A 181 OG REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LEU A 187 CD1 CD2 REMARK 470 ILE A 202 CD1 REMARK 470 LYS A 256 CD CE NZ REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ARG A 265 CZ NH1 NH2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 GLU A 271 CD OE1 OE2 REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 LEU A 281 CG CD1 CD2 REMARK 470 LEU A 282 CG CD1 CD2 REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 LEU A 286 CG CD1 CD2 REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 ASP A 291 CG OD1 OD2 REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 THR A 297 OG1 CG2 REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 299 CG CD1 CD2 REMARK 470 HIS A 300 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 SER A 303 OG REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 310 CG1 CG2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 GLN A 315 CG CD OE1 NE2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 THR A 330 OG1 CG2 REMARK 470 HIS B 82 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 MET B 85 CG SD CE REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 VAL B 108 CG1 CG2 REMARK 470 GLU B 109 CG CD OE1 OE2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 SER B 113 OG REMARK 470 ILE B 117 CD1 REMARK 470 SER B 119 OG REMARK 470 VAL B 121 CG1 CG2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 151 CD OE1 OE2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 VAL B 181 CG1 CG2 REMARK 470 HIS B 185 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 189 CE NZ REMARK 470 GLN B 209 OE1 NE2 REMARK 470 VAL B 211 CG1 CG2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LEU B 221 CD1 CD2 REMARK 470 SER B 231 OG REMARK 470 SER B 232 OG REMARK 470 ASN B 233 CG OD1 ND2 REMARK 470 ILE B 258 CD1 REMARK 470 LEU B 270 CD1 CD2 REMARK 470 GLU B 275 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 146 -4.12 -146.84 REMARK 500 PRO A 180 -34.19 -35.51 REMARK 500 ASP A 291 6.69 -150.62 REMARK 500 ALA B 81 -22.55 79.42 REMARK 500 SER B 232 -109.42 -93.82 REMARK 500 ASN B 233 -74.41 -126.40 REMARK 500 LEU B 254 63.75 17.83 REMARK 500 ILE B 258 30.80 -99.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 IPE A 402 O2A 63.6 REMARK 620 3 IPE A 402 O3B 54.3 68.7 REMARK 620 4 IPE A 403 O1A 58.7 76.1 112.5 REMARK 620 5 HOH A 506 O 62.5 126.0 82.7 74.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPE A 403 DBREF 6W2L A 2 330 UNP Q86SQ9 DHDDS_HUMAN 2 330 DBREF 6W2L B 80 293 UNP Q96E22 NGBR_HUMAN 80 293 SEQADV 6W2L ALA A 1 UNP Q86SQ9 EXPRESSION TAG SEQADV 6W2L MET A 253 UNP Q86SQ9 VAL 253 VARIANT SEQRES 1 A 330 ALA SER TRP ILE LYS GLU GLY GLU LEU SER LEU TRP GLU SEQRES 2 A 330 ARG PHE CYS ALA ASN ILE ILE LYS ALA GLY PRO MET PRO SEQRES 3 A 330 LYS HIS ILE ALA PHE ILE MET ASP GLY ASN ARG ARG TYR SEQRES 4 A 330 ALA LYS LYS CYS GLN VAL GLU ARG GLN GLU GLY HIS SER SEQRES 5 A 330 GLN GLY PHE ASN LYS LEU ALA GLU THR LEU ARG TRP CYS SEQRES 6 A 330 LEU ASN LEU GLY ILE LEU GLU VAL THR VAL TYR ALA PHE SEQRES 7 A 330 SER ILE GLU ASN PHE LYS ARG SER LYS SER GLU VAL ASP SEQRES 8 A 330 GLY LEU MET ASP LEU ALA ARG GLN LYS PHE SER ARG LEU SEQRES 9 A 330 MET GLU GLU LYS GLU LYS LEU GLN LYS HIS GLY VAL CYS SEQRES 10 A 330 ILE ARG VAL LEU GLY ASP LEU HIS LEU LEU PRO LEU ASP SEQRES 11 A 330 LEU GLN GLU LEU ILE ALA GLN ALA VAL GLN ALA THR LYS SEQRES 12 A 330 ASN TYR ASN LYS CYS PHE LEU ASN VAL CYS PHE ALA TYR SEQRES 13 A 330 THR SER ARG HIS GLU ILE SER ASN ALA VAL ARG GLU MET SEQRES 14 A 330 ALA TRP GLY VAL GLU GLN GLY LEU LEU ASP PRO SER ASP SEQRES 15 A 330 ILE SER GLU SER LEU LEU ASP LYS CYS LEU TYR THR ASN SEQRES 16 A 330 ARG SER PRO HIS PRO ASP ILE LEU ILE ARG THR SER GLY SEQRES 17 A 330 GLU VAL ARG LEU SER ASP PHE LEU LEU TRP GLN THR SER SEQRES 18 A 330 HIS SER CYS LEU VAL PHE GLN PRO VAL LEU TRP PRO GLU SEQRES 19 A 330 TYR THR PHE TRP ASN LEU PHE GLU ALA ILE LEU GLN PHE SEQRES 20 A 330 GLN MET ASN HIS SER MET LEU GLN LYS ALA ARG ASP MET SEQRES 21 A 330 TYR ALA GLU GLU ARG LYS ARG GLN GLN LEU GLU ARG ASP SEQRES 22 A 330 GLN ALA THR VAL THR GLU GLN LEU LEU ARG GLU GLY LEU SEQRES 23 A 330 GLN ALA SER GLY ASP ALA GLN LEU ARG ARG THR ARG LEU SEQRES 24 A 330 HIS LYS LEU SER ALA ARG ARG GLU GLU ARG VAL GLN GLY SEQRES 25 A 330 PHE LEU GLN ALA LEU GLU LEU LYS ARG ALA ASP TRP LEU SEQRES 26 A 330 ALA ARG LEU GLY THR SEQRES 1 B 214 ALA ALA HIS HIS ARG MET ARG TRP ARG ALA ASP GLY ARG SEQRES 2 B 214 SER LEU GLU LYS LEU PRO VAL HIS MET GLY LEU VAL ILE SEQRES 3 B 214 THR GLU VAL GLU GLN GLU PRO SER PHE SER ASP ILE ALA SEQRES 4 B 214 SER LEU VAL VAL TRP CYS MET ALA VAL GLY ILE SER TYR SEQRES 5 B 214 ILE SER VAL TYR ASP HIS GLN GLY ILE PHE LYS ARG ASN SEQRES 6 B 214 ASN SER ARG LEU MET ASP GLU ILE LEU LYS GLN GLN GLN SEQRES 7 B 214 GLU LEU LEU GLY LEU ASP CYS SER LYS TYR SER PRO GLU SEQRES 8 B 214 PHE ALA ASN SER ASN ASP LYS ASP ASP GLN VAL LEU ASN SEQRES 9 B 214 CYS HIS LEU ALA VAL LYS VAL LEU SER PRO GLU ASP GLY SEQRES 10 B 214 LYS ALA ASP ILE VAL ARG ALA ALA GLN ASP PHE CYS GLN SEQRES 11 B 214 LEU VAL ALA GLN LYS GLN LYS ARG PRO THR ASP LEU ASP SEQRES 12 B 214 VAL ASP THR LEU ALA SER LEU LEU SER SER ASN GLY CYS SEQRES 13 B 214 PRO ASP PRO ASP LEU VAL LEU LYS PHE GLY PRO VAL ASP SEQRES 14 B 214 SER THR LEU GLY PHE LEU PRO TRP HIS ILE ARG LEU THR SEQRES 15 B 214 GLU ILE VAL SER LEU PRO SER HIS LEU ASN ILE SER TYR SEQRES 16 B 214 GLU ASP PHE PHE SER ALA LEU ARG GLN TYR ALA ALA CYS SEQRES 17 B 214 GLU GLN ARG LEU GLY LYS HET MG A 401 1 HET IPE A 402 14 HET IPE A 403 14 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 IPE 2(C5 H12 O7 P2) FORMUL 6 HOH *107(H2 O) HELIX 1 AA1 SER A 10 LYS A 21 1 12 HELIX 2 AA2 GLY A 35 CYS A 43 1 9 HELIX 3 AA3 GLU A 46 LEU A 68 1 23 HELIX 4 AA4 GLU A 81 ARG A 85 5 5 HELIX 5 AA5 SER A 86 GLU A 106 1 21 HELIX 6 AA6 GLU A 107 GLY A 115 1 9 HELIX 7 AA7 ASP A 123 LEU A 127 5 5 HELIX 8 AA8 PRO A 128 LYS A 143 1 16 HELIX 9 AA9 THR A 157 GLN A 175 1 19 HELIX 10 AB1 ASP A 179 ILE A 183 5 5 HELIX 11 AB2 SER A 184 LYS A 190 1 7 HELIX 12 AB3 LEU A 231 TYR A 235 5 5 HELIX 13 AB4 THR A 236 GLY A 285 1 50 HELIX 14 AB5 GLN A 293 GLY A 329 1 37 HELIX 15 AB6 ALA B 81 LEU B 94 1 14 HELIX 16 AB7 PHE B 114 GLY B 128 1 15 HELIX 17 AB8 PHE B 141 ARG B 143 5 3 HELIX 18 AB9 ASN B 144 LEU B 159 1 16 HELIX 19 AC1 ASP B 178 ALA B 187 1 10 HELIX 20 AC2 SER B 192 ASP B 195 5 4 HELIX 21 AC3 GLY B 196 GLN B 213 1 18 HELIX 22 AC4 ARG B 217 LEU B 221 5 5 HELIX 23 AC5 ASP B 222 LEU B 230 1 9 HELIX 24 AC6 SER B 273 CYS B 287 1 15 SHEET 1 AA1 6 VAL A 116 LEU A 121 0 SHEET 2 AA1 6 CYS A 148 TYR A 156 1 O CYS A 148 N CYS A 117 SHEET 3 AA1 6 GLU A 72 SER A 79 1 N VAL A 75 O CYS A 153 SHEET 4 AA1 6 HIS A 28 ILE A 32 1 N PHE A 31 O THR A 74 SHEET 5 AA1 6 ILE A 202 ARG A 205 1 O ILE A 204 N ILE A 32 SHEET 6 AA1 6 CYS A 224 PHE A 227 1 O VAL A 226 N LEU A 203 SHEET 1 AA2 5 VAL B 188 LEU B 191 0 SHEET 2 AA2 5 TYR B 131 ASP B 136 1 N VAL B 134 O LEU B 191 SHEET 3 AA2 5 HIS B 100 ILE B 105 1 N MET B 101 O TYR B 131 SHEET 4 AA2 5 LEU B 240 PHE B 244 1 O PHE B 244 N VAL B 104 SHEET 5 AA2 5 GLU B 262 LEU B 266 1 O VAL B 264 N LYS B 243 LINK OD1 ASP A 34 MG MG A 401 1555 1555 2.94 LINK MG MG A 401 O2A IPE A 402 1555 1555 2.41 LINK MG MG A 401 O3B IPE A 402 1555 1555 2.33 LINK MG MG A 401 O1A IPE A 403 1555 1555 2.26 LINK MG MG A 401 O HOH A 506 1555 1555 2.30 SITE 1 AC1 4 ASP A 34 IPE A 402 IPE A 403 HOH A 506 SITE 1 AC2 13 MET A 33 ASP A 34 GLY A 35 ASN A 36 SITE 2 AC2 13 ARG A 37 ARG A 38 HIS A 51 ALA A 77 SITE 3 AC2 13 ASN A 82 ARG A 85 MG A 401 IPE A 403 SITE 4 AC2 13 HOH A 506 SITE 1 AC3 19 ILE A 32 MET A 33 ASP A 34 TYR A 76 SITE 2 AC3 19 ALA A 77 PHE A 78 ASN A 82 ARG A 85 SITE 3 AC3 19 ARG A 205 ARG A 211 SER A 213 MG A 401 SITE 4 AC3 19 IPE A 402 HOH A 506 HOH A 514 ARG B 290 SITE 5 AC3 19 LEU B 291 GLY B 292 HOH B 308 CRYST1 185.670 185.670 113.351 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005386 0.003110 0.000000 0.00000 SCALE2 0.000000 0.006219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008822 0.00000