HEADER SIGNALING PROTEIN 08-MAR-20 6W32 TITLE CRYSTAL STRUCTURE OF SFH5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SFH5; COMPND 3 CHAIN: B, A, C; COMPND 4 SYNONYM: PITP SFH5,SEC14 HOMOLOG 5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN YJM789); SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 307796; SOURCE 5 STRAIN: YJM789; SOURCE 6 GENE: SFH5, SCY_3146; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.GULTEN,D.KHAN,A.AGGARWAL,I.KRIEGER,J.C.SACCHETTINI,V.A.BANKAITIS REVDAT 2 06-MAR-24 6W32 1 REMARK REVDAT 1 25-NOV-20 6W32 0 JRNL AUTH D.KHAN,D.LEE,G.GULTEN,A.AGGARWAL,J.WOFFORD,I.KRIEGER, JRNL AUTH 2 A.TRIPATHI,J.W.PATRICK,D.M.ECKERT,A.LAGANOWSKY, JRNL AUTH 3 J.SACCHETTINI,P.LINDAHL,V.A.BANKAITIS JRNL TITL A SEC14-LIKE PHOSPHATIDYLINOSITOL TRANSFER PROTEIN PARALOG JRNL TITL 2 DEFINES A NOVEL CLASS OF HEME-BINDING PROTEINS. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32780017 JRNL DOI 10.7554/ELIFE.57081 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3240 - 8.0720 0.98 2602 152 0.1683 0.2357 REMARK 3 2 8.0720 - 6.4292 0.99 2663 109 0.1944 0.2228 REMARK 3 3 6.4292 - 5.6230 0.99 2662 113 0.2215 0.2867 REMARK 3 4 5.6230 - 5.1118 0.99 2658 153 0.2044 0.2927 REMARK 3 5 5.1118 - 4.7471 0.99 2666 111 0.2032 0.3119 REMARK 3 6 4.7471 - 4.4682 1.00 2706 94 0.1955 0.3128 REMARK 3 7 4.4682 - 4.2451 0.99 2596 159 0.2037 0.3100 REMARK 3 8 4.2451 - 4.0608 1.00 2696 132 0.2185 0.2718 REMARK 3 9 4.0608 - 3.9049 1.00 2658 163 0.2349 0.3169 REMARK 3 10 3.9049 - 3.7704 1.00 2623 135 0.2324 0.3214 REMARK 3 11 3.7704 - 3.6528 1.00 2682 152 0.2397 0.2926 REMARK 3 12 3.6528 - 3.5485 0.99 2589 176 0.2647 0.3094 REMARK 3 13 3.5485 - 3.4553 1.00 2689 126 0.2740 0.3790 REMARK 3 14 3.4553 - 3.3711 1.00 2651 140 0.2850 0.3122 REMARK 3 15 3.3711 - 3.2945 1.00 2657 154 0.2848 0.3221 REMARK 3 16 3.2945 - 3.2245 1.00 2651 140 0.2980 0.4052 REMARK 3 17 3.2245 - 3.1601 1.00 2641 149 0.3102 0.3916 REMARK 3 18 3.1601 - 3.1005 1.00 2656 149 0.3149 0.3336 REMARK 3 19 3.1005 - 3.0452 1.00 2644 137 0.3395 0.3847 REMARK 3 20 3.0452 - 2.9936 1.00 2673 138 0.3508 0.3971 REMARK 3 21 2.9936 - 2.9454 1.00 2659 164 0.3438 0.4073 REMARK 3 22 2.9454 - 2.9001 1.00 2664 145 0.3416 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 2.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KSCN, 0.1 M NA-CITRATE (PH 4.2), REMARK 280 24% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.15650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 102.67150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 102.67150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.23475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 102.67150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 102.67150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.07825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 102.67150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.67150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.23475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 102.67150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.67150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.07825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.15650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 THR B 44 REMARK 465 VAL B 293 REMARK 465 GLU B 294 REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PHE A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 35 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 THR A 44 REMARK 465 ASP A 292 REMARK 465 VAL A 293 REMARK 465 GLU A 294 REMARK 465 MET C -9 REMARK 465 GLY C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 GLY C 42 REMARK 465 LEU C 43 REMARK 465 THR C 44 REMARK 465 GLN C 45 REMARK 465 GLU C 46 REMARK 465 GLU C 47 REMARK 465 VAL C 293 REMARK 465 GLU C 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS C 269 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 97 -38.71 -130.10 REMARK 500 LEU B 127 55.67 -92.12 REMARK 500 LYS B 135 33.85 -95.37 REMARK 500 ASN B 166 35.27 -147.53 REMARK 500 ASN B 274 109.47 -53.77 REMARK 500 HIS B 276 82.81 62.17 REMARK 500 PRO B 277 153.86 -48.32 REMARK 500 LYS A 16 5.09 -69.30 REMARK 500 LYS A 26 12.35 -143.22 REMARK 500 PHE A 70 25.75 46.69 REMARK 500 TYR A 72 -71.96 -54.62 REMARK 500 PRO A 91 -24.13 -28.71 REMARK 500 HIS A 100 -72.22 -99.85 REMARK 500 ASN A 101 119.18 -171.99 REMARK 500 ASN A 119 -8.47 72.46 REMARK 500 LYS A 120 44.56 -89.73 REMARK 500 ASN A 166 33.89 -146.89 REMARK 500 TYR A 207 -65.90 -95.91 REMARK 500 PRO A 215 141.34 -39.09 REMARK 500 LYS A 227 -1.40 -58.24 REMARK 500 ASP A 242 69.79 60.68 REMARK 500 ASP A 252 62.15 -102.16 REMARK 500 GLU A 256 75.07 65.07 REMARK 500 LYS A 264 -70.68 -57.16 REMARK 500 ASN A 266 -179.02 -67.56 REMARK 500 HIS A 276 85.26 57.09 REMARK 500 PRO A 277 170.19 -50.70 REMARK 500 ALA C 28 -0.65 65.42 REMARK 500 ASP C 31 41.04 -143.84 REMARK 500 TYR C 34 16.97 55.21 REMARK 500 LEU C 38 -1.50 -145.83 REMARK 500 ASP C 53 130.95 -170.69 REMARK 500 LYS C 55 -76.14 -57.39 REMARK 500 ALA C 57 5.76 -69.56 REMARK 500 GLN C 69 59.84 39.88 REMARK 500 SER C 73 10.38 -68.75 REMARK 500 THR C 74 -63.24 -127.84 REMARK 500 THR C 162 -144.68 -149.68 REMARK 500 SER C 163 -81.70 -49.59 REMARK 500 SER C 164 -25.34 -147.48 REMARK 500 ASN C 166 16.41 -145.43 REMARK 500 LYS C 227 10.53 -66.98 REMARK 500 ASP C 252 46.95 -89.63 REMARK 500 TYR C 255 170.24 83.02 REMARK 500 GLU C 256 -0.97 80.51 REMARK 500 ASP C 262 47.83 -161.95 REMARK 500 HIS C 276 83.71 62.43 REMARK 500 PRO C 277 -172.23 -65.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 175 OH REMARK 620 2 HEM B 301 NA 93.9 REMARK 620 3 HEM B 301 NB 92.1 87.6 REMARK 620 4 HEM B 301 NC 91.7 174.3 91.2 REMARK 620 5 HEM B 301 ND 94.6 90.3 173.2 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 175 OH REMARK 620 2 HEM A 301 NA 97.3 REMARK 620 3 HEM A 301 NB 79.8 87.4 REMARK 620 4 HEM A 301 NC 77.5 174.0 88.7 REMARK 620 5 HEM A 301 ND 96.4 91.0 175.6 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 175 OH REMARK 620 2 HEM C 301 NA 104.9 REMARK 620 3 HEM C 301 NB 95.7 86.6 REMARK 620 4 HEM C 301 NC 76.3 175.8 89.2 REMARK 620 5 HEM C 301 ND 90.1 91.4 174.2 92.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 301 DBREF 6W32 B 1 294 UNP A6ZQI5 SFH5_YEAS7 1 294 DBREF 6W32 A 1 294 UNP A6ZQI5 SFH5_YEAS7 1 294 DBREF 6W32 C 1 294 UNP A6ZQI5 SFH5_YEAS7 1 294 SEQADV 6W32 MET B -9 UNP A6ZQI5 INITIATING METHIONINE SEQADV 6W32 GLY B -8 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -7 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -6 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -5 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -4 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -3 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -2 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B -1 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS B 0 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 MET A -9 UNP A6ZQI5 INITIATING METHIONINE SEQADV 6W32 GLY A -8 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -7 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -6 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -5 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -4 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -3 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -2 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A -1 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS A 0 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 MET C -9 UNP A6ZQI5 INITIATING METHIONINE SEQADV 6W32 GLY C -8 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -7 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -6 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -5 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -4 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -3 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -2 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C -1 UNP A6ZQI5 EXPRESSION TAG SEQADV 6W32 HIS C 0 UNP A6ZQI5 EXPRESSION TAG SEQRES 1 B 304 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS MET LYS PHE SEQRES 2 B 304 ASP ASN ASP SER GLU LYS GLN VAL PHE ASP LYS LEU LYS SEQRES 3 B 304 LYS ALA ILE PRO GLY ILE ILE LYS GLU LYS CYS ALA GLY SEQRES 4 B 304 TYR ASP GLU LEU TYR GLY TYR LYS LEU ASN PRO GLU GLY SEQRES 5 B 304 LEU THR GLN GLU GLU VAL ASP LYS TYR TYR ASP GLU LYS SEQRES 6 B 304 ILE ALA ASP ARG LEU THR TYR LYS LEU CYS LYS ALA TYR SEQRES 7 B 304 GLN PHE GLU TYR SER THR ILE VAL GLN ASN LEU ILE ASP SEQRES 8 B 304 ILE LEU ASN TRP ARG ARG GLU PHE ASN PRO LEU SER CYS SEQRES 9 B 304 ALA TYR LYS GLU VAL HIS ASN THR GLU LEU GLN ASN VAL SEQRES 10 B 304 GLY ILE LEU THR PHE ASP ALA ASN GLY ASP ALA ASN LYS SEQRES 11 B 304 LYS ALA VAL THR TRP ASN LEU TYR GLY GLN LEU VAL LYS SEQRES 12 B 304 LYS LYS GLU LEU PHE GLN ASN VAL ASP LYS PHE VAL ARG SEQRES 13 B 304 TYR ARG ILE GLY LEU MET GLU LYS GLY LEU SER LEU LEU SEQRES 14 B 304 ASP PHE THR SER SER ASP ASN ASN TYR MET THR GLN VAL SEQRES 15 B 304 HIS ASP TYR LYS GLY VAL SER VAL TRP ARG MET ASP SER SEQRES 16 B 304 ASP ILE LYS ASN CYS SER LYS THR VAL ILE GLY ILE PHE SEQRES 17 B 304 GLN LYS TYR TYR PRO GLU LEU LEU TYR ALA LYS TYR PHE SEQRES 18 B 304 VAL ASN VAL PRO THR VAL PHE GLY TRP VAL TYR ASP LEU SEQRES 19 B 304 ILE LYS LYS PHE VAL ASP GLU THR THR ARG LYS LYS PHE SEQRES 20 B 304 VAL VAL LEU THR ASP GLY SER LYS LEU GLY GLN TYR LEU SEQRES 21 B 304 LYS ASP CYS PRO TYR GLU GLY TYR GLY GLY LYS ASP LYS SEQRES 22 B 304 LYS ASN ASN LEU THR LYS GLN ASN VAL THR ASN VAL HIS SEQRES 23 B 304 PRO THR GLU TYR GLY LEU TYR ILE LEU GLN LYS GLN ILE SEQRES 24 B 304 ILE GLU ASP VAL GLU SEQRES 1 A 304 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS MET LYS PHE SEQRES 2 A 304 ASP ASN ASP SER GLU LYS GLN VAL PHE ASP LYS LEU LYS SEQRES 3 A 304 LYS ALA ILE PRO GLY ILE ILE LYS GLU LYS CYS ALA GLY SEQRES 4 A 304 TYR ASP GLU LEU TYR GLY TYR LYS LEU ASN PRO GLU GLY SEQRES 5 A 304 LEU THR GLN GLU GLU VAL ASP LYS TYR TYR ASP GLU LYS SEQRES 6 A 304 ILE ALA ASP ARG LEU THR TYR LYS LEU CYS LYS ALA TYR SEQRES 7 A 304 GLN PHE GLU TYR SER THR ILE VAL GLN ASN LEU ILE ASP SEQRES 8 A 304 ILE LEU ASN TRP ARG ARG GLU PHE ASN PRO LEU SER CYS SEQRES 9 A 304 ALA TYR LYS GLU VAL HIS ASN THR GLU LEU GLN ASN VAL SEQRES 10 A 304 GLY ILE LEU THR PHE ASP ALA ASN GLY ASP ALA ASN LYS SEQRES 11 A 304 LYS ALA VAL THR TRP ASN LEU TYR GLY GLN LEU VAL LYS SEQRES 12 A 304 LYS LYS GLU LEU PHE GLN ASN VAL ASP LYS PHE VAL ARG SEQRES 13 A 304 TYR ARG ILE GLY LEU MET GLU LYS GLY LEU SER LEU LEU SEQRES 14 A 304 ASP PHE THR SER SER ASP ASN ASN TYR MET THR GLN VAL SEQRES 15 A 304 HIS ASP TYR LYS GLY VAL SER VAL TRP ARG MET ASP SER SEQRES 16 A 304 ASP ILE LYS ASN CYS SER LYS THR VAL ILE GLY ILE PHE SEQRES 17 A 304 GLN LYS TYR TYR PRO GLU LEU LEU TYR ALA LYS TYR PHE SEQRES 18 A 304 VAL ASN VAL PRO THR VAL PHE GLY TRP VAL TYR ASP LEU SEQRES 19 A 304 ILE LYS LYS PHE VAL ASP GLU THR THR ARG LYS LYS PHE SEQRES 20 A 304 VAL VAL LEU THR ASP GLY SER LYS LEU GLY GLN TYR LEU SEQRES 21 A 304 LYS ASP CYS PRO TYR GLU GLY TYR GLY GLY LYS ASP LYS SEQRES 22 A 304 LYS ASN ASN LEU THR LYS GLN ASN VAL THR ASN VAL HIS SEQRES 23 A 304 PRO THR GLU TYR GLY LEU TYR ILE LEU GLN LYS GLN ILE SEQRES 24 A 304 ILE GLU ASP VAL GLU SEQRES 1 C 304 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS MET LYS PHE SEQRES 2 C 304 ASP ASN ASP SER GLU LYS GLN VAL PHE ASP LYS LEU LYS SEQRES 3 C 304 LYS ALA ILE PRO GLY ILE ILE LYS GLU LYS CYS ALA GLY SEQRES 4 C 304 TYR ASP GLU LEU TYR GLY TYR LYS LEU ASN PRO GLU GLY SEQRES 5 C 304 LEU THR GLN GLU GLU VAL ASP LYS TYR TYR ASP GLU LYS SEQRES 6 C 304 ILE ALA ASP ARG LEU THR TYR LYS LEU CYS LYS ALA TYR SEQRES 7 C 304 GLN PHE GLU TYR SER THR ILE VAL GLN ASN LEU ILE ASP SEQRES 8 C 304 ILE LEU ASN TRP ARG ARG GLU PHE ASN PRO LEU SER CYS SEQRES 9 C 304 ALA TYR LYS GLU VAL HIS ASN THR GLU LEU GLN ASN VAL SEQRES 10 C 304 GLY ILE LEU THR PHE ASP ALA ASN GLY ASP ALA ASN LYS SEQRES 11 C 304 LYS ALA VAL THR TRP ASN LEU TYR GLY GLN LEU VAL LYS SEQRES 12 C 304 LYS LYS GLU LEU PHE GLN ASN VAL ASP LYS PHE VAL ARG SEQRES 13 C 304 TYR ARG ILE GLY LEU MET GLU LYS GLY LEU SER LEU LEU SEQRES 14 C 304 ASP PHE THR SER SER ASP ASN ASN TYR MET THR GLN VAL SEQRES 15 C 304 HIS ASP TYR LYS GLY VAL SER VAL TRP ARG MET ASP SER SEQRES 16 C 304 ASP ILE LYS ASN CYS SER LYS THR VAL ILE GLY ILE PHE SEQRES 17 C 304 GLN LYS TYR TYR PRO GLU LEU LEU TYR ALA LYS TYR PHE SEQRES 18 C 304 VAL ASN VAL PRO THR VAL PHE GLY TRP VAL TYR ASP LEU SEQRES 19 C 304 ILE LYS LYS PHE VAL ASP GLU THR THR ARG LYS LYS PHE SEQRES 20 C 304 VAL VAL LEU THR ASP GLY SER LYS LEU GLY GLN TYR LEU SEQRES 21 C 304 LYS ASP CYS PRO TYR GLU GLY TYR GLY GLY LYS ASP LYS SEQRES 22 C 304 LYS ASN ASN LEU THR LYS GLN ASN VAL THR ASN VAL HIS SEQRES 23 C 304 PRO THR GLU TYR GLY LEU TYR ILE LEU GLN LYS GLN ILE SEQRES 24 C 304 ILE GLU ASP VAL GLU HET HEM B 301 43 HET HEM A 301 43 HET HEM C 301 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) HELIX 1 AA1 ASN B 5 CYS B 27 1 23 HELIX 2 AA2 GLU B 46 LYS B 50 5 5 HELIX 3 AA3 ASP B 53 TYR B 68 1 16 HELIX 4 AA4 GLU B 71 PHE B 89 1 19 HELIX 5 AA5 ASN B 90 LYS B 97 1 8 HELIX 6 AA6 ASN B 101 ASN B 106 1 6 HELIX 7 AA7 TYR B 128 VAL B 132 5 5 HELIX 8 AA8 ASN B 140 SER B 157 1 18 HELIX 9 AA9 ASP B 184 TYR B 202 1 19 HELIX 10 AB1 PRO B 215 VAL B 217 5 3 HELIX 11 AB2 PHE B 218 LYS B 227 1 10 HELIX 12 AB3 ASP B 230 LYS B 235 1 6 HELIX 13 AB4 ASP B 242 TYR B 249 5 8 HELIX 14 AB5 PRO B 254 GLY B 259 1 6 HELIX 15 AB6 ASN B 266 ASN B 271 1 6 HELIX 16 AB7 THR B 278 ILE B 289 1 12 HELIX 17 AB8 ALA A 18 LYS A 26 1 9 HELIX 18 AB9 GLU A 46 TYR A 52 1 7 HELIX 19 AC1 LYS A 55 TYR A 68 1 14 HELIX 20 AC2 GLU A 71 ASN A 90 1 20 HELIX 21 AC3 ASN A 90 LYS A 97 1 8 HELIX 22 AC4 ASN A 101 ASN A 106 1 6 HELIX 23 AC5 TYR A 128 VAL A 132 5 5 HELIX 24 AC6 ASN A 140 SER A 157 1 18 HELIX 25 AC7 ASP A 184 TYR A 202 1 19 HELIX 26 AC8 PRO A 215 VAL A 217 5 3 HELIX 27 AC9 PHE A 218 LYS A 227 1 10 HELIX 28 AD1 ASP A 230 LYS A 235 1 6 HELIX 29 AD2 ASP A 242 TYR A 249 5 8 HELIX 30 AD3 THR A 278 GLN A 286 1 9 HELIX 31 AD4 LYS C 9 LYS C 14 1 6 HELIX 32 AD5 ALA C 18 LYS C 24 1 7 HELIX 33 AD6 ASP C 58 CYS C 65 1 8 HELIX 34 AD7 GLU C 71 PHE C 89 1 19 HELIX 35 AD8 ASN C 90 LYS C 97 1 8 HELIX 36 AD9 ASN C 101 ASN C 106 1 6 HELIX 37 AE1 TYR C 128 VAL C 132 5 5 HELIX 38 AE2 LYS C 134 GLN C 139 5 6 HELIX 39 AE3 ASN C 140 GLY C 155 1 16 HELIX 40 AE4 ASP C 184 TYR C 201 1 18 HELIX 41 AE5 PRO C 215 VAL C 217 5 3 HELIX 42 AE6 PHE C 218 LYS C 227 1 10 HELIX 43 AE7 ASP C 230 LYS C 235 1 6 HELIX 44 AE8 GLY C 243 TYR C 249 5 7 HELIX 45 AE9 LEU C 267 ASN C 271 5 5 HELIX 46 AF1 THR C 278 GLN C 286 1 9 SHEET 1 AA1 2 GLU B 32 LEU B 33 0 SHEET 2 AA1 2 TYR B 36 LYS B 37 -1 O TYR B 36 N LEU B 33 SHEET 1 AA2 5 GLY B 108 PHE B 112 0 SHEET 2 AA2 5 ALA B 122 ASN B 126 -1 O TRP B 125 N ILE B 109 SHEET 3 AA2 5 MET B 169 ASP B 174 1 O VAL B 172 N THR B 124 SHEET 4 AA2 5 LEU B 206 VAL B 212 1 O TYR B 207 N MET B 169 SHEET 5 AA2 5 PHE B 237 LEU B 240 1 O LEU B 240 N PHE B 211 SHEET 1 AA3 5 GLY A 108 PHE A 112 0 SHEET 2 AA3 5 ALA A 122 ASN A 126 -1 O VAL A 123 N THR A 111 SHEET 3 AA3 5 MET A 169 ASP A 174 1 O ASP A 174 N ASN A 126 SHEET 4 AA3 5 LEU A 206 VAL A 212 1 O VAL A 212 N HIS A 173 SHEET 5 AA3 5 PHE A 237 LEU A 240 1 O LEU A 240 N PHE A 211 SHEET 1 AA4 2 GLU C 32 LEU C 33 0 SHEET 2 AA4 2 TYR C 36 LYS C 37 -1 O TYR C 36 N LEU C 33 SHEET 1 AA5 5 GLY C 108 THR C 111 0 SHEET 2 AA5 5 VAL C 123 ASN C 126 -1 O TRP C 125 N ILE C 109 SHEET 3 AA5 5 VAL C 172 ASP C 174 1 O ASP C 174 N ASN C 126 SHEET 4 AA5 5 TYR C 210 VAL C 212 1 O VAL C 212 N HIS C 173 SHEET 5 AA5 5 VAL C 238 LEU C 240 1 O LEU C 240 N PHE C 211 LINK OH TYR B 175 FE HEM B 301 1555 1555 2.29 LINK OH TYR A 175 FE HEM A 301 1555 1555 2.35 LINK OH TYR C 175 FE HEM C 301 1555 1555 2.49 SITE 1 AC1 19 TYR B 128 PHE B 138 ARG B 148 HIS B 173 SITE 2 AC1 19 TYR B 175 VAL B 178 MET B 183 ILE B 187 SITE 3 AC1 19 SER B 191 VAL B 194 PHE B 198 LYS B 209 SITE 4 AC1 19 PHE B 211 PHE B 218 VAL B 221 TYR B 222 SITE 5 AC1 19 ILE B 225 VAL B 229 PHE B 237 SITE 1 AC2 17 TYR A 128 PHE A 138 PHE A 144 ARG A 148 SITE 2 AC2 17 HIS A 173 TYR A 175 VAL A 178 ILE A 187 SITE 3 AC2 17 SER A 191 VAL A 194 ILE A 195 LYS A 209 SITE 4 AC2 17 PHE A 211 PHE A 218 VAL A 221 ILE A 225 SITE 5 AC2 17 VAL A 229 SITE 1 AC3 18 TYR C 128 PHE C 138 PHE C 144 ARG C 148 SITE 2 AC3 18 HIS C 173 TYR C 175 VAL C 178 ILE C 187 SITE 3 AC3 18 SER C 191 VAL C 194 ILE C 195 LYS C 209 SITE 4 AC3 18 PHE C 211 PHE C 218 VAL C 221 ILE C 225 SITE 5 AC3 18 VAL C 229 PHE C 237 CRYST1 205.343 205.343 68.313 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014639 0.00000