HEADER TRANSFERASE 09-MAR-20 6W38 TITLE CRYSTAL STRUCTURE OF THE FAM46C/PLK4 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINAL NUCLEOTIDYLTRANSFERASE 5C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-CANONICAL POLY(A) POLYMERASE FAM46C; COMPND 5 EC: 2.7.7.19; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 585-807; COMPND 11 SYNONYM: POLO-LIKE KINASE 4,PLK-4,SERINE/THREONINE-PROTEIN KINASE 18, COMPND 12 SERINE/THREONINE-PROTEIN KINASE SAK; COMPND 13 EC: 2.7.11.21; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TENT5C, FAM46C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PLK4, SAK, STK18; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,D.F.LU,G.J.SHANG,X.W.ZHANG REVDAT 4 18-OCT-23 6W38 1 REMARK REVDAT 3 19-AUG-20 6W38 1 JRNL REVDAT 2 03-JUN-20 6W38 1 JRNL REVDAT 1 06-MAY-20 6W38 0 JRNL AUTH H.CHEN,D.LU,G.SHANG,G.GAO,X.ZHANG JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF THE FAM46C/PLK4 JRNL TITL 2 COMPLEX. JRNL REF STRUCTURE V. 28 910 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32433990 JRNL DOI 10.1016/J.STR.2020.04.023 REMARK 2 REMARK 2 RESOLUTION. 4.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 6111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6490 - 7.1181 0.98 1650 184 0.1936 0.2764 REMARK 3 2 7.1181 - 5.6530 1.00 1595 181 0.2900 0.3090 REMARK 3 3 5.6530 - 4.9393 0.84 1337 144 0.2474 0.2991 REMARK 3 4 4.9393 - 4.4881 0.58 920 100 0.2309 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4512 REMARK 3 ANGLE : 1.185 6105 REMARK 3 CHIRALITY : 0.062 693 REMARK 3 PLANARITY : 0.009 782 REMARK 3 DIHEDRAL : 7.331 2747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 12:343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6013 177.9701 206.4189 REMARK 3 T TENSOR REMARK 3 T11: 0.5945 T22: 0.1759 REMARK 3 T33: 0.6031 T12: 0.1459 REMARK 3 T13: 0.1297 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 3.1221 L22: 1.7694 REMARK 3 L33: 2.1479 L12: -0.3882 REMARK 3 L13: 0.4335 L23: 0.0921 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.2573 S13: -0.8602 REMARK 3 S21: -0.5602 S22: -0.0876 S23: -0.0446 REMARK 3 S31: -0.1718 S32: -0.3113 S33: 0.0486 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 586:700 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6786 186.9929 235.2483 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.8955 REMARK 3 T33: 0.6583 T12: -0.0660 REMARK 3 T13: 0.0943 T23: 0.2324 REMARK 3 L TENSOR REMARK 3 L11: 3.9478 L22: 2.1429 REMARK 3 L33: 4.1344 L12: -1.1329 REMARK 3 L13: -0.7374 L23: 1.6305 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: -0.9611 S13: 0.5102 REMARK 3 S21: -0.2494 S22: 0.3821 S23: -0.4945 REMARK 3 S31: -0.4471 S32: 0.6311 S33: -0.3063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 701:807 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0765 180.6701 259.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.4733 T22: 1.4265 REMARK 3 T33: 0.3575 T12: -0.0342 REMARK 3 T13: 0.0264 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.5881 L22: 2.7600 REMARK 3 L33: 1.9136 L12: 0.6789 REMARK 3 L13: 0.0617 L23: 1.4300 REMARK 3 S TENSOR REMARK 3 S11: 0.1651 S12: -0.6810 S13: -0.0469 REMARK 3 S21: 0.6640 S22: -0.1909 S23: -0.3496 REMARK 3 S31: 0.5018 S32: 0.7578 S33: 0.0959 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6713 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4N7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIS, PH 10, SMALL TUBES, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.69600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.30650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.74900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.69600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.30650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.74900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.69600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 79.30650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.74900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.69600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 79.30650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.74900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 196 REMARK 465 GLN A 344 REMARK 465 ASN A 345 REMARK 465 ILE A 346 REMARK 465 ILE A 347 REMARK 465 PRO A 348 REMARK 465 SER A 349 REMARK 465 ALA A 350 REMARK 465 THR A 351 REMARK 465 ASN A 352 REMARK 465 VAL A 353 REMARK 465 THR A 354 REMARK 465 CYS A 355 REMARK 465 TYR A 356 REMARK 465 TYR A 357 REMARK 465 GLN A 358 REMARK 465 ARG B 585 REMARK 465 GLY B 653 REMARK 465 GLY B 654 REMARK 465 ARG B 655 REMARK 465 GLY B 656 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 15 OG REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ASN A 125 CG OD1 ND2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ASN A 161 CG OD1 ND2 REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 LYS B 748 CG CD CE NZ REMARK 470 ARG B 794 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 806 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 605 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 -156.07 -108.07 REMARK 500 HIS A 96 99.59 -65.42 REMARK 500 PRO A 121 -70.26 -72.29 REMARK 500 LYS A 126 49.04 -74.57 REMARK 500 LEU A 127 43.03 -78.42 REMARK 500 THR A 147 -156.44 -115.02 REMARK 500 ARG A 151 100.04 -164.94 REMARK 500 LYS A 160 -145.24 -164.60 REMARK 500 ARG A 174 40.49 -70.38 REMARK 500 ARG A 175 78.17 49.69 REMARK 500 GLN A 176 80.60 -58.41 REMARK 500 GLU A 178 -137.93 -152.04 REMARK 500 PHE A 194 0.12 -54.42 REMARK 500 PHE A 206 81.58 -153.52 REMARK 500 ARG A 240 -166.04 -116.90 REMARK 500 GLU B 617 -2.39 75.62 REMARK 500 ALA B 628 -129.24 58.92 REMARK 500 SER B 629 0.69 -45.96 REMARK 500 PRO B 651 -77.75 -64.35 REMARK 500 THR B 667 -135.06 -102.86 REMARK 500 ASN B 669 85.64 -69.39 REMARK 500 THR B 707 -169.38 -105.74 REMARK 500 ASP B 738 -72.83 -111.39 REMARK 500 LYS B 753 -75.09 -91.77 REMARK 500 SER B 795 -160.91 -171.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 753 SER B 754 -146.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 6W38 A 14 358 UNP Q5VWP2 TET5C_HUMAN 14 358 DBREF 6W38 B 585 807 UNP O00444 PLK4_HUMAN 585 807 SEQADV 6W38 MET A 12 UNP Q5VWP2 EXPRESSION TAG SEQADV 6W38 ALA A 13 UNP Q5VWP2 EXPRESSION TAG SEQRES 1 A 347 MET ALA PHE SER VAL LEU ASN TRP ASP GLN VAL SER ARG SEQRES 2 A 347 LEU HIS GLU VAL LEU THR GLU VAL VAL PRO ILE HIS GLY SEQRES 3 A 347 ARG GLY ASN PHE PRO THR LEU GLU ILE THR LEU LYS ASP SEQRES 4 A 347 ILE VAL GLN THR VAL ARG SER ARG LEU GLU GLU ALA GLY SEQRES 5 A 347 ILE LYS VAL HIS ASP VAL ARG LEU ASN GLY SER ALA ALA SEQRES 6 A 347 GLY HIS VAL LEU VAL LYS ASP ASN GLY LEU GLY CYS LYS SEQRES 7 A 347 ASP LEU ASP LEU ILE PHE HIS VAL ALA LEU PRO THR GLU SEQRES 8 A 347 ALA GLU PHE GLN LEU VAL ARG ASP VAL VAL LEU CYS SER SEQRES 9 A 347 LEU LEU ASN PHE LEU PRO GLU GLY VAL ASN LYS LEU LYS SEQRES 10 A 347 ILE SER PRO VAL THR LEU LYS GLU ALA TYR VAL GLN LYS SEQRES 11 A 347 LEU VAL LYS VAL CYS THR ASP THR ASP ARG TRP SER LEU SEQRES 12 A 347 ILE SER LEU SER ASN LYS ASN GLY LYS ASN VAL GLU LEU SEQRES 13 A 347 LYS PHE VAL ASP SER ILE ARG ARG GLN PHE GLU PHE SER SEQRES 14 A 347 VAL ASP SER PHE GLN ILE ILE LEU ASP SER LEU LEU PHE SEQRES 15 A 347 PHE TYR ASP CYS SER ASN ASN PRO ILE SER GLU HIS PHE SEQRES 16 A 347 HIS PRO THR VAL ILE GLY GLU SER MET TYR GLY ASP PHE SEQRES 17 A 347 GLU GLU ALA PHE ASP HIS LEU GLN ASN ARG LEU ILE ALA SEQRES 18 A 347 THR LYS ASN PRO GLU GLU ILE ARG GLY GLY GLY LEU LEU SEQRES 19 A 347 LYS TYR SER ASN LEU LEU VAL ARG ASP PHE ARG PRO THR SEQRES 20 A 347 ASP GLN GLU GLU ILE LYS THR LEU GLU ARG TYR MET CYS SEQRES 21 A 347 SER ARG PHE PHE ILE ASP PHE PRO ASP ILE LEU GLU GLN SEQRES 22 A 347 GLN ARG LYS LEU GLU THR TYR LEU GLN ASN HIS PHE ALA SEQRES 23 A 347 GLU GLU GLU ARG SER LYS TYR ASP TYR LEU MET ILE LEU SEQRES 24 A 347 ARG ARG VAL VAL ASN GLU SER THR VAL CYS LEU MET GLY SEQRES 25 A 347 HIS GLU ARG ARG GLN THR LEU ASN LEU ILE SER LEU LEU SEQRES 26 A 347 ALA LEU ARG VAL LEU ALA GLU GLN ASN ILE ILE PRO SER SEQRES 27 A 347 ALA THR ASN VAL THR CYS TYR TYR GLN SEQRES 1 B 223 ARG THR LEU ARG SER ILE THR SER PRO LEU VAL ALA HIS SEQRES 2 B 223 ARG LEU LYS PRO ILE ARG GLN LYS THR LYS LYS ALA VAL SEQRES 3 B 223 VAL SER ILE LEU ASP SER GLU GLU VAL CYS VAL GLU LEU SEQRES 4 B 223 VAL LYS GLU TYR ALA SER GLN GLU TYR VAL LYS GLU VAL SEQRES 5 B 223 LEU GLN ILE SER SER ASP GLY ASN THR ILE THR ILE TYR SEQRES 6 B 223 TYR PRO ASN GLY GLY ARG GLY PHE PRO LEU ALA ASP ARG SEQRES 7 B 223 PRO PRO SER PRO THR ASP ASN ILE SER ARG TYR SER PHE SEQRES 8 B 223 ASP ASN LEU PRO GLU LYS TYR TRP ARG LYS TYR GLN TYR SEQRES 9 B 223 ALA SER ARG PHE VAL GLN LEU VAL ARG SER LYS SER PRO SEQRES 10 B 223 LYS ILE THR TYR PHE THR ARG TYR ALA LYS CYS ILE LEU SEQRES 11 B 223 MET GLU ASN SER PRO GLY ALA ASP PHE GLU VAL TRP PHE SEQRES 12 B 223 TYR ASP GLY VAL LYS ILE HIS LYS THR GLU ASP PHE ILE SEQRES 13 B 223 GLN VAL ILE GLU LYS THR GLY LYS SER TYR THR LEU LYS SEQRES 14 B 223 SER GLU SER GLU VAL ASN SER LEU LYS GLU GLU ILE LYS SEQRES 15 B 223 MET TYR MET ASP HIS ALA ASN GLU GLY HIS ARG ILE CYS SEQRES 16 B 223 LEU ALA LEU GLU SER ILE ILE SER GLU GLU GLU ARG LYS SEQRES 17 B 223 THR ARG SER ALA PRO PHE PHE PRO ILE ILE ILE GLY ARG SEQRES 18 B 223 LYS PRO HELIX 1 AA1 ASN A 18 GLU A 31 1 14 HELIX 2 AA2 LEU A 48 GLY A 63 1 16 HELIX 3 AA3 ASN A 72 VAL A 81 1 10 HELIX 4 AA4 THR A 101 ASN A 118 1 18 HELIX 5 AA5 SER A 130 VAL A 139 1 10 HELIX 6 AA6 PHE A 179 ASP A 182 5 4 HELIX 7 AA7 LEU A 188 PHE A 194 1 7 HELIX 8 AA8 ASP A 218 ASN A 228 1 11 HELIX 9 AA9 ASN A 235 ILE A 239 5 5 HELIX 10 AB1 ARG A 240 GLY A 241 5 2 HELIX 11 AB2 GLY A 242 ARG A 253 1 12 HELIX 12 AB3 ASP A 259 PHE A 278 1 20 HELIX 13 AB4 ASP A 280 PHE A 296 1 17 HELIX 14 AB5 GLU A 299 THR A 318 1 20 HELIX 15 AB6 VAL A 319 LEU A 321 5 3 HELIX 16 AB7 MET A 322 LEU A 341 1 20 HELIX 17 AB8 THR B 586 ILE B 590 5 5 HELIX 18 AB9 ASP B 676 LEU B 678 5 3 HELIX 19 AC1 PRO B 679 SER B 698 1 20 HELIX 20 AC2 SER B 754 ASN B 759 1 6 HELIX 21 AC3 LYS B 762 THR B 793 1 32 SHEET 1 AA114 PHE A 14 VAL A 16 0 SHEET 2 AA114 ILE A 211 SER A 214 -1 O GLY A 212 N SER A 15 SHEET 3 AA114 PHE A 184 ILE A 187 -1 N GLN A 185 O GLU A 213 SHEET 4 AA114 VAL A 66 LEU A 71 -1 N LEU A 71 O ILE A 186 SHEET 5 AA114 ASP A 90 VAL A 97 -1 O ILE A 94 N ARG A 70 SHEET 6 AA114 ASN A 164 SER A 172 1 O LYS A 168 N LEU A 93 SHEET 7 AA114 ARG A 151 SER A 156 -1 N SER A 153 O PHE A 169 SHEET 8 AA114 LEU A 142 CYS A 146 -1 N VAL A 145 O TRP A 152 SHEET 9 AA114 ILE B 670 SER B 674 1 O ARG B 672 N LYS A 144 SHEET 10 AA114 THR B 645 TYR B 649 -1 N ILE B 646 O TYR B 673 SHEET 11 AA114 GLN B 630 ILE B 639 -1 N GLN B 638 O THR B 647 SHEET 12 AA114 VAL B 619 TYR B 627 -1 N LYS B 625 O TYR B 632 SHEET 13 AA114 ALA B 609 ILE B 613 -1 N VAL B 610 O GLU B 622 SHEET 14 AA114 ILE B 602 LYS B 605 -1 N ILE B 602 O ILE B 613 SHEET 1 AA2 2 VAL A 32 ILE A 35 0 SHEET 2 AA2 2 LEU A 44 THR A 47 -1 O LEU A 44 N ILE A 35 SHEET 1 AA3 2 LEU A 230 ILE A 231 0 SHEET 2 AA3 2 ARG A 256 PRO A 257 1 O ARG A 256 N ILE A 231 SHEET 1 AA4 7 SER B 749 TYR B 750 0 SHEET 2 AA4 7 ILE B 740 ILE B 743 -1 N VAL B 742 O TYR B 750 SHEET 3 AA4 7 LYS B 732 LYS B 735 -1 N LYS B 732 O ILE B 743 SHEET 4 AA4 7 PHE B 723 PHE B 727 -1 N VAL B 725 O ILE B 733 SHEET 5 AA4 7 ALA B 710 MET B 715 -1 N LYS B 711 O TRP B 726 SHEET 6 AA4 7 PRO B 701 PHE B 706 -1 N LYS B 702 O LEU B 714 SHEET 7 AA4 7 ILE B 801 ILE B 803 1 O ILE B 801 N THR B 704 CISPEP 1 SER B 718 PRO B 719 0 1.66 CISPEP 2 PHE B 799 PRO B 800 0 2.17 CRYST1 87.392 158.613 165.498 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006042 0.00000