HEADER TRANSFERASE 09-MAR-20 6W39 TITLE STRUCTURE OF UNPHOSPHORYLATED IRE1 IN COMPLEX WITH G-1749 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL- COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A; COMPND 6 EC: 2.7.11.1,3.1.26.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERN1, IRE1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS KINASE, UPR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FERRI,W.WANG,R.JOACHIM,K.MORTARA REVDAT 4 18-OCT-23 6W39 1 REMARK REVDAT 3 16-JUN-21 6W39 1 REMARK REVDAT 2 30-DEC-20 6W39 1 JRNL REVDAT 1 09-DEC-20 6W39 0 JRNL AUTH E.FERRI,A.LE THOMAS,H.A.WALLWEBER,E.S.DAY,B.T.WALTERS, JRNL AUTH 2 S.E.KAUFMAN,M.G.BRAUN,K.R.CLARK,M.H.BERESINI,K.MORTARA, JRNL AUTH 3 Y.A.CHEN,B.CANTER,W.PHUNG,P.S.LIU,A.LAMMENS,A.ASHKENAZI, JRNL AUTH 4 J.RUDOLPH,W.WANG JRNL TITL ACTIVATION OF THE IRE1 RNASE THROUGH REMODELING OF THE JRNL TITL 2 KINASE FRONT POCKET BY ATP-COMPETITIVE LIGANDS. JRNL REF NAT COMMUN V. 11 6387 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33318494 JRNL DOI 10.1038/S41467-020-19974-5 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.7 REMARK 3 NUMBER OF REFLECTIONS : 76918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.2718 - 4.1844 1.00 3861 188 0.1505 0.1761 REMARK 3 2 4.1844 - 3.6554 1.00 3823 190 0.1524 0.2234 REMARK 3 3 3.6554 - 3.3212 1.00 3789 207 0.1815 0.2470 REMARK 3 4 3.3212 - 3.0832 1.00 3720 238 0.2066 0.2536 REMARK 3 5 3.0832 - 2.9014 1.00 3797 187 0.2204 0.2432 REMARK 3 6 2.9014 - 2.7561 1.00 3740 211 0.2166 0.2402 REMARK 3 7 2.7561 - 2.6361 1.00 3735 214 0.2112 0.2569 REMARK 3 8 2.6361 - 2.5346 1.00 3732 208 0.2110 0.2048 REMARK 3 9 2.5346 - 2.4471 1.00 3714 227 0.2020 0.2338 REMARK 3 10 2.4471 - 2.3706 1.00 3731 175 0.2019 0.2237 REMARK 3 11 2.3706 - 2.3028 1.00 3726 196 0.2026 0.2470 REMARK 3 12 2.3028 - 2.2422 1.00 3715 216 0.2036 0.2473 REMARK 3 13 2.2422 - 2.1875 1.00 3701 210 0.2106 0.2672 REMARK 3 14 2.1875 - 2.1378 0.99 3678 217 0.2199 0.2694 REMARK 3 15 2.1378 - 2.0923 0.97 3658 160 0.2394 0.3026 REMARK 3 16 2.0923 - 2.0504 0.87 3251 153 0.2496 0.2915 REMARK 3 17 2.0504 - 2.0117 0.66 2471 134 0.2548 0.2774 REMARK 3 18 2.0117 - 1.9758 0.53 1952 79 0.2625 0.2983 REMARK 3 19 1.9758 - 1.9423 0.38 1417 80 0.2665 0.3068 REMARK 3 20 1.9423 - 1.9110 0.30 1129 65 0.2743 0.2777 REMARK 3 21 1.9110 - 1.8816 0.22 802 51 0.2918 0.2847 REMARK 3 22 1.8816 - 1.8539 0.16 572 42 0.2877 0.3542 REMARK 3 23 1.8539 - 1.8278 0.12 460 24 0.2990 0.3220 REMARK 3 24 1.8278 - 1.8031 0.09 321 17 0.2831 0.3000 REMARK 3 25 1.8031 - 1.7796 0.07 255 10 0.3282 0.3537 REMARK 3 26 1.7796 - 1.7574 0.04 132 7 0.2784 0.3791 REMARK 3 27 1.7574 - 1.7362 0.03 98 3 0.3271 0.4139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6169 REMARK 3 ANGLE : 1.134 8362 REMARK 3 CHIRALITY : 0.044 913 REMARK 3 PLANARITY : 0.006 1075 REMARK 3 DIHEDRAL : 12.779 2236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 97.1924 33.1149 51.5546 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.0986 REMARK 3 T33: 0.1148 T12: 0.0108 REMARK 3 T13: 0.0016 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.7527 L22: 1.2400 REMARK 3 L33: 0.2304 L12: 0.7020 REMARK 3 L13: 0.0989 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.1509 S13: 0.0237 REMARK 3 S21: 0.0447 S22: -0.0790 S23: -0.0012 REMARK 3 S31: -0.0038 S32: -0.0257 S33: 0.0327 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000246913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.736 REMARK 200 RESOLUTION RANGE LOW (A) : 82.312 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.06700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M MAGNESIUM REMARK 280 ACETATE, 18% W/V PEG 8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.85350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.31150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.46100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.31150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.85350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.46100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 PRO A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 GLU A 553 REMARK 465 GLN A 554 REMARK 465 ASP A 555 REMARK 465 ASP A 556 REMARK 465 GLY A 557 REMARK 465 ASP A 558 REMARK 465 GLU A 559 REMARK 465 GLU A 560 REMARK 465 THR A 561 REMARK 465 SER A 562 REMARK 465 GLY A 580 REMARK 465 CYS A 715 REMARK 465 LYS A 716 REMARK 465 LYS A 717 REMARK 465 LEU A 718 REMARK 465 ALA A 719 REMARK 465 VAL A 720 REMARK 465 GLY A 721 REMARK 465 ARG A 722 REMARK 465 HIS A 723 REMARK 465 SER A 724 REMARK 465 PHE A 725 REMARK 465 SER A 726 REMARK 465 ARG A 727 REMARK 465 ARG A 728 REMARK 465 SER A 729 REMARK 465 GLY A 730 REMARK 465 VAL A 731 REMARK 465 PRO A 732 REMARK 465 GLY A 733 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 465 CYS A 747 REMARK 465 LYS A 748 REMARK 465 ARG A 887 REMARK 465 LYS A 888 REMARK 465 PHE A 889 REMARK 465 GLU A 964 REMARK 465 PRO A 965 REMARK 465 PRO A 966 REMARK 465 GLU A 967 REMARK 465 PRO A 968 REMARK 465 GLN A 969 REMARK 465 PRO A 970 REMARK 465 PRO A 971 REMARK 465 VAL A 972 REMARK 465 THR A 973 REMARK 465 PRO A 974 REMARK 465 ASP A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 GLY B 547 REMARK 465 SER B 548 REMARK 465 SER B 549 REMARK 465 PRO B 550 REMARK 465 SER B 551 REMARK 465 LEU B 552 REMARK 465 GLU B 553 REMARK 465 GLN B 554 REMARK 465 ASP B 555 REMARK 465 ASP B 556 REMARK 465 GLY B 557 REMARK 465 ASP B 558 REMARK 465 GLU B 559 REMARK 465 GLU B 560 REMARK 465 THR B 561 REMARK 465 SER B 562 REMARK 465 LYS B 656 REMARK 465 ASP B 657 REMARK 465 CYS B 715 REMARK 465 LYS B 716 REMARK 465 LYS B 717 REMARK 465 LEU B 718 REMARK 465 ALA B 719 REMARK 465 VAL B 720 REMARK 465 GLY B 721 REMARK 465 ARG B 722 REMARK 465 HIS B 723 REMARK 465 SER B 724 REMARK 465 PHE B 725 REMARK 465 SER B 726 REMARK 465 ARG B 727 REMARK 465 ARG B 728 REMARK 465 SER B 729 REMARK 465 GLY B 730 REMARK 465 VAL B 731 REMARK 465 PRO B 732 REMARK 465 GLY B 733 REMARK 465 GLU B 745 REMARK 465 ASP B 746 REMARK 465 CYS B 747 REMARK 465 LYS B 748 REMARK 465 LYS B 888 REMARK 465 PHE B 889 REMARK 465 GLU B 964 REMARK 465 PRO B 965 REMARK 465 PRO B 966 REMARK 465 GLU B 967 REMARK 465 PRO B 968 REMARK 465 GLN B 969 REMARK 465 PRO B 970 REMARK 465 PRO B 971 REMARK 465 VAL B 972 REMARK 465 THR B 973 REMARK 465 PRO B 974 REMARK 465 ASP B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 470 LEU A 602 CG CD1 CD2 REMARK 470 GLU A 604 CG CD OE1 OE2 REMARK 470 SER A 607 OG REMARK 470 GLU A 618 CG CD OE1 OE2 REMARK 470 ARG A 635 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 636 CG CD OE1 NE2 REMARK 470 LYS A 656 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 HIS A 660 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 744 OG REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 ARG A 864 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 890 CG CD NE CZ NH1 NH2 REMARK 470 THR A 891 OG1 CG2 REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 953 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 958 CG CD OE1 NE2 REMARK 470 HIS A 963 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 563 CG1 CG2 REMARK 470 CYS B 572 SG REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 GLU B 582 CG CD OE1 OE2 REMARK 470 GLU B 604 CG CD OE1 OE2 REMARK 470 ARG B 635 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 636 CG CD OE1 NE2 REMARK 470 HIS B 660 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 744 OG REMARK 470 GLU B 749 CG CD OE1 OE2 REMARK 470 ARG B 864 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 867 CG CD NE CZ NH1 NH2 REMARK 470 MET B 872 CG SD CE REMARK 470 LEU B 886 CG CD1 CD2 REMARK 470 ARG B 887 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 890 CG CD NE CZ NH1 NH2 REMARK 470 THR B 891 OG1 CG2 REMARK 470 GLU B 917 CG CD OE1 OE2 REMARK 470 GLU B 920 CG CD OE1 OE2 REMARK 470 ARG B 946 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 958 CG CD OE1 NE2 REMARK 470 HIS B 963 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1110 O HOH A 1234 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 573 -9.05 -59.67 REMARK 500 GLU A 582 38.06 71.60 REMARK 500 GLU A 621 45.13 -93.33 REMARK 500 ASP A 657 -33.58 101.41 REMARK 500 ARG A 687 -19.18 82.30 REMARK 500 ASP A 688 40.53 -143.62 REMARK 500 GLU A 735 -131.09 -110.65 REMARK 500 MET A 872 -49.83 75.20 REMARK 500 HIS B 579 -155.88 -125.12 REMARK 500 GLU B 582 13.27 55.76 REMARK 500 CYS B 605 -10.61 -141.66 REMARK 500 GLU B 621 46.97 -99.68 REMARK 500 ASP B 634 -164.06 -114.36 REMARK 500 ARG B 687 -14.52 80.89 REMARK 500 ASP B 688 38.14 -146.87 REMARK 500 GLU B 735 -117.38 -121.34 REMARK 500 LEU B 792 53.01 -116.64 REMARK 500 MET B 872 -53.29 71.76 REMARK 500 LEU B 886 30.01 -98.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SJG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SJG B 1001 DBREF 6W39 A 547 977 UNP O75460 ERN1_HUMAN 547 977 DBREF 6W39 B 547 977 UNP O75460 ERN1_HUMAN 547 977 SEQRES 1 A 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 A 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 A 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 A 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 A 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 A 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 A 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 A 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 A 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 A 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 A 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 A 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 A 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 A 431 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SEQRES 15 A 431 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 A 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 A 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 A 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 A 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 A 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 A 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 A 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 A 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 A 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 A 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 A 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 A 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 A 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 A 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 A 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 A 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 A 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 A 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 A 431 ALA LEU SEQRES 1 B 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 B 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 B 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 B 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 B 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 B 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 B 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 B 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 B 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 B 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 B 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 B 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 B 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 B 431 LYS LYS LEU ALA VAL GLY ARG HIS SER PHE SER ARG ARG SEQRES 15 B 431 SER GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 B 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 B 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 B 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 B 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 B 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 B 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 B 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 B 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 B 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 B 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 B 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 B 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 B 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 B 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 B 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 B 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 B 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 B 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 B 431 ALA LEU HET SJG A1001 38 HET SJG B1001 38 HETNAM SJG ETHYL ~{N}-[6-METHYL-5-[3-[2-[[(3~{S})-PIPERIDIN-3- HETNAM 2 SJG YL]AMINO]PYRIMIDIN-4-YL]PYRIDIN-2-YL]OXY-NAPHTHALEN-1- HETNAM 3 SJG YL]CARBAMATE FORMUL 3 SJG 2(C28 H30 N6 O3) FORMUL 5 HOH *388(H2 O) HELIX 1 AA1 LEU A 602 GLU A 604 5 3 HELIX 2 AA2 CYS A 605 ASP A 620 1 16 HELIX 3 AA3 LEU A 649 GLN A 655 1 7 HELIX 4 AA4 ASP A 657 GLY A 662 5 6 HELIX 5 AA5 GLU A 664 LEU A 682 1 19 HELIX 6 AA6 LYS A 690 HIS A 692 5 3 HELIX 7 AA7 ALA A 739 SER A 744 1 6 HELIX 8 AA8 TYR A 753 SER A 769 1 17 HELIX 9 AA9 GLN A 780 GLY A 788 1 9 HELIX 10 AB1 LYS A 799 ILE A 813 1 15 HELIX 11 AB2 ASP A 816 ARG A 820 5 5 HELIX 12 AB3 SER A 822 LYS A 828 1 7 HELIX 13 AB4 HIS A 829 TRP A 833 5 5 HELIX 14 AB5 SER A 834 ILE A 849 1 16 HELIX 15 AB6 GLY A 856 ARG A 864 1 9 HELIX 16 AB7 GLY A 865 VAL A 870 1 6 HELIX 17 AB8 ASP A 873 ASN A 877 5 5 HELIX 18 AB9 THR A 879 ASP A 885 1 7 HELIX 19 AC1 SER A 896 HIS A 910 1 15 HELIX 20 AC2 TYR A 911 LEU A 914 5 4 HELIX 21 AC3 PRO A 915 GLY A 923 1 9 HELIX 22 AC4 PRO A 926 PHE A 937 1 12 HELIX 23 AC5 HIS A 939 MET A 948 1 10 HELIX 24 AC6 GLU A 949 SER A 952 5 4 HELIX 25 AC7 GLU A 954 GLN A 958 5 5 HELIX 26 AC8 ALA B 581 GLY B 583 5 3 HELIX 27 AC9 CYS B 605 ASP B 620 1 16 HELIX 28 AD1 LEU B 649 GLN B 655 1 7 HELIX 29 AD2 PHE B 658 GLY B 662 5 5 HELIX 30 AD3 GLU B 664 LEU B 682 1 19 HELIX 31 AD4 LYS B 690 HIS B 692 5 3 HELIX 32 AD5 ALA B 739 SER B 744 5 6 HELIX 33 AD6 TYR B 753 SER B 769 1 17 HELIX 34 AD7 GLN B 780 GLY B 788 1 9 HELIX 35 AD8 LYS B 799 ILE B 813 1 15 HELIX 36 AD9 ASP B 816 ARG B 820 5 5 HELIX 37 AE1 SER B 822 LYS B 828 1 7 HELIX 38 AE2 HIS B 829 TRP B 833 5 5 HELIX 39 AE3 SER B 834 GLU B 850 1 17 HELIX 40 AE4 GLY B 856 ARG B 864 1 9 HELIX 41 AE5 GLY B 865 VAL B 870 1 6 HELIX 42 AE6 ASP B 873 ILE B 878 5 6 HELIX 43 AE7 THR B 879 LEU B 886 1 8 HELIX 44 AE8 SER B 896 HIS B 910 1 15 HELIX 45 AE9 TYR B 911 LEU B 914 5 4 HELIX 46 AF1 PRO B 915 GLY B 923 1 9 HELIX 47 AF2 PRO B 926 PHE B 937 1 12 HELIX 48 AF3 HIS B 939 MET B 948 1 10 HELIX 49 AF4 GLU B 949 SER B 952 5 4 HELIX 50 AF5 GLU B 954 GLN B 958 5 5 SHEET 1 AA1 6 VAL A 564 VAL A 566 0 SHEET 2 AA1 6 ILE A 569 GLY A 578 -1 O ILE A 569 N VAL A 566 SHEET 3 AA1 6 ILE A 585 PHE A 591 -1 O VAL A 586 N LEU A 577 SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587 SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O GLN A 638 N ILE A 601 SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N GLU A 632 O TYR A 639 SHEET 1 AA2 3 CYS A 645 THR A 648 0 SHEET 2 AA2 3 ILE A 694 SER A 697 -1 O ILE A 696 N ALA A 647 SHEET 3 AA2 3 ALA A 707 ILE A 709 -1 O MET A 708 N LEU A 695 SHEET 1 AA3 6 VAL B 564 VAL B 566 0 SHEET 2 AA3 6 ILE B 569 HIS B 579 -1 O PHE B 571 N VAL B 564 SHEET 3 AA3 6 ILE B 585 PHE B 591 -1 O VAL B 586 N LEU B 577 SHEET 4 AA3 6 ARG B 594 ILE B 601 -1 O ARG B 600 N ILE B 585 SHEET 5 AA3 6 GLN B 638 GLU B 643 -1 O GLN B 638 N ILE B 601 SHEET 6 AA3 6 TYR B 628 LYS B 633 -1 N GLU B 632 O TYR B 639 SHEET 1 AA4 3 CYS B 645 THR B 648 0 SHEET 2 AA4 3 ILE B 694 SER B 697 -1 O ILE B 696 N ALA B 647 SHEET 3 AA4 3 ALA B 707 ILE B 709 -1 O MET B 708 N LEU B 695 CISPEP 1 LEU A 925 PRO A 926 0 -2.64 CISPEP 2 LEU B 925 PRO B 926 0 -3.14 SITE 1 AC1 14 LEU A 577 VAL A 586 ALA A 597 LYS A 599 SITE 2 AC1 14 GLU A 612 ILE A 642 GLU A 643 CYS A 645 SITE 3 AC1 14 ALA A 646 GLU A 651 SER A 710 ASP A 711 SITE 4 AC1 14 PHE A 712 HOH A1183 SITE 1 AC2 12 ALA B 597 LYS B 599 GLU B 612 ILE B 642 SITE 2 AC2 12 GLU B 643 CYS B 645 ALA B 646 GLU B 651 SITE 3 AC2 12 SER B 710 ASP B 711 PHE B 712 HOH B1193 CRYST1 77.707 82.922 164.623 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006074 0.00000