HEADER TRANSFERASE 09-MAR-20 6W3E TITLE STRUCTURE OF PHOSPHORYLATED IRE1 IN COMPLEX WITH G-0701 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL- COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A; COMPND 6 EC: 2.7.11.1,3.1.26.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERN1, IRE1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS KINASE, UPR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FERRI,W.WANG,R.JOACHIM,K.MORTARA REVDAT 5 06-NOV-24 6W3E 1 REMARK REVDAT 4 18-OCT-23 6W3E 1 REMARK REVDAT 3 16-JUN-21 6W3E 1 REMARK REVDAT 2 30-DEC-20 6W3E 1 JRNL REVDAT 1 09-DEC-20 6W3E 0 JRNL AUTH E.FERRI,A.LE THOMAS,H.A.WALLWEBER,E.S.DAY,B.T.WALTERS, JRNL AUTH 2 S.E.KAUFMAN,M.G.BRAUN,K.R.CLARK,M.H.BERESINI,K.MORTARA, JRNL AUTH 3 Y.A.CHEN,B.CANTER,W.PHUNG,P.S.LIU,A.LAMMENS,A.ASHKENAZI, JRNL AUTH 4 J.RUDOLPH,W.WANG JRNL TITL ACTIVATION OF THE IRE1 RNASE THROUGH REMODELING OF THE JRNL TITL 2 KINASE FRONT POCKET BY ATP-COMPETITIVE LIGANDS. JRNL REF NAT COMMUN V. 11 6387 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33318494 JRNL DOI 10.1038/S41467-020-19974-5 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.4 REMARK 3 NUMBER OF REFLECTIONS : 17403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.2641 - 4.9730 0.92 1814 193 0.2626 0.3107 REMARK 3 2 4.9730 - 4.3446 0.95 1842 209 0.2331 0.2818 REMARK 3 3 4.3446 - 3.9475 0.90 1734 193 0.2366 0.3106 REMARK 3 4 3.9475 - 3.6646 0.94 1810 192 0.2670 0.3149 REMARK 3 5 3.6646 - 3.4486 0.94 1833 204 0.2812 0.3393 REMARK 3 6 3.4486 - 3.2759 0.82 1592 174 0.3047 0.3328 REMARK 3 7 3.2759 - 3.1333 0.64 1223 141 0.3128 0.3553 REMARK 3 8 3.1333 - 3.0127 0.47 902 103 0.3444 0.3872 REMARK 3 9 3.0127 - 2.9088 0.34 647 73 0.3530 0.3394 REMARK 3 10 2.9088 - 2.8178 0.18 352 40 0.3604 0.4039 REMARK 3 11 2.8178 - 2.7373 0.04 85 11 0.3488 0.3847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6182 REMARK 3 ANGLE : 0.777 8372 REMARK 3 CHIRALITY : 0.031 908 REMARK 3 PLANARITY : 0.004 1077 REMARK 3 DIHEDRAL : 12.227 2239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -1.3156 -22.0839 28.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0857 REMARK 3 T33: 0.1082 T12: 0.0480 REMARK 3 T13: 0.0106 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.1164 L22: 0.2662 REMARK 3 L33: 0.7716 L12: 0.1100 REMARK 3 L13: 0.0773 L23: -0.4329 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0118 S13: 0.0408 REMARK 3 S21: 0.0121 S22: 0.0426 S23: 0.0474 REMARK 3 S31: -0.1765 S32: -0.1287 S33: 0.0305 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 4161 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.737 REMARK 200 RESOLUTION RANGE LOW (A) : 55.937 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.1 M POTASSIUM REMARK 280 DIHYDROGEN PHOSPHATE, 16 %W/V PEG 8K, 5.2 MM FOS-MEA-10, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 69.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 PRO A 550 REMARK 465 SER A 551 REMARK 465 LEU A 552 REMARK 465 GLU A 553 REMARK 465 GLN A 554 REMARK 465 ASP A 555 REMARK 465 ASP A 556 REMARK 465 GLY A 557 REMARK 465 ASP A 558 REMARK 465 GLU A 559 REMARK 465 GLU A 560 REMARK 465 THR A 561 REMARK 465 LEU A 714 REMARK 465 CYS A 715 REMARK 465 LYS A 716 REMARK 465 LYS A 717 REMARK 465 LEU A 718 REMARK 465 ALA A 719 REMARK 465 VAL A 720 REMARK 465 GLY A 721 REMARK 465 ARG A 722 REMARK 465 HIS A 723 REMARK 465 SEP A 724 REMARK 465 PHE A 725 REMARK 465 SEP A 726 REMARK 465 ARG A 727 REMARK 465 ARG A 728 REMARK 465 SEP A 729 REMARK 465 GLY A 730 REMARK 465 VAL A 731 REMARK 465 PRO A 732 REMARK 465 GLY A 733 REMARK 465 THR A 734 REMARK 465 MET A 742 REMARK 465 LEU A 743 REMARK 465 SER A 744 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 465 CYS A 747 REMARK 465 LYS A 748 REMARK 465 GLU A 749 REMARK 465 ASN A 750 REMARK 465 PRO A 751 REMARK 465 ARG A 887 REMARK 465 LYS A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 HIS A 963 REMARK 465 GLU A 964 REMARK 465 PRO A 965 REMARK 465 PRO A 966 REMARK 465 GLU A 967 REMARK 465 PRO A 968 REMARK 465 GLN A 969 REMARK 465 PRO A 970 REMARK 465 PRO A 971 REMARK 465 VAL A 972 REMARK 465 THR A 973 REMARK 465 PRO A 974 REMARK 465 ASP A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 GLY B 547 REMARK 465 SER B 548 REMARK 465 SER B 549 REMARK 465 PRO B 550 REMARK 465 SER B 551 REMARK 465 LEU B 552 REMARK 465 GLU B 553 REMARK 465 GLN B 554 REMARK 465 ASP B 555 REMARK 465 ASP B 556 REMARK 465 GLY B 557 REMARK 465 ASP B 558 REMARK 465 GLU B 559 REMARK 465 GLU B 560 REMARK 465 THR B 561 REMARK 465 SER B 562 REMARK 465 GLY B 580 REMARK 465 ALA B 581 REMARK 465 GLU B 582 REMARK 465 ARG B 728 REMARK 465 SEP B 729 REMARK 465 GLY B 730 REMARK 465 VAL B 731 REMARK 465 SER B 744 REMARK 465 GLU B 745 REMARK 465 ASP B 746 REMARK 465 CYS B 747 REMARK 465 LYS B 748 REMARK 465 GLU B 964 REMARK 465 PRO B 965 REMARK 465 PRO B 966 REMARK 465 GLU B 967 REMARK 465 PRO B 968 REMARK 465 GLN B 969 REMARK 465 PRO B 970 REMARK 465 PRO B 971 REMARK 465 VAL B 972 REMARK 465 THR B 973 REMARK 465 PRO B 974 REMARK 465 ASP B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 565 CG1 CG2 CD1 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 GLU A 604 CG CD OE1 OE2 REMARK 470 SER A 607 OG REMARK 470 ARG A 611 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 633 CG CD CE NZ REMARK 470 GLN A 636 CG CD OE1 NE2 REMARK 470 GLU A 735 CG CD OE1 OE2 REMARK 470 GLN A 818 CG CD OE1 NE2 REMARK 470 LYS A 851 CG CD CE NZ REMARK 470 ARG A 867 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 876 CG CD OE1 OE2 REMARK 470 VAL A 880 CG1 CG2 REMARK 470 THR A 884 OG1 CG2 REMARK 470 THR A 891 OG1 CG2 REMARK 470 LYS A 893 CG CD CE NZ REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 917 CG CD OE1 OE2 REMARK 470 GLU A 920 CG CD OE1 OE2 REMARK 470 VAL B 563 CG1 CG2 REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 HIS B 579 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 584 OG1 CG2 REMARK 470 ILE B 585 CG1 CG2 CD1 REMARK 470 CYS B 605 SG REMARK 470 PHE B 608 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 633 CG CD CE NZ REMARK 470 ARG B 727 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 749 CG CD OE1 OE2 REMARK 470 ASP B 793 CG OD1 OD2 REMARK 470 GLN B 818 CG CD OE1 NE2 REMARK 470 LYS B 819 CG CD CE NZ REMARK 470 LYS B 851 CG CD CE NZ REMARK 470 LEU B 854 CG CD1 CD2 REMARK 470 ARG B 867 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 907 CG CD CE NZ REMARK 470 ARG B 912 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 917 CG CD OE1 OE2 REMARK 470 ARG B 919 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 920 CG CD OE1 OE2 REMARK 470 LEU B 922 CG CD1 CD2 REMARK 470 HIS B 953 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 962 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 963 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 700 N LYS B 704 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 563 100.74 -164.41 REMARK 500 ALA A 581 -137.54 23.18 REMARK 500 SER A 619 12.99 -145.07 REMARK 500 PHE A 629 -70.50 -97.05 REMARK 500 ASP A 634 -167.63 -114.87 REMARK 500 ASP A 688 62.78 -106.65 REMARK 500 ASP A 711 89.13 60.00 REMARK 500 GLN A 780 -6.71 -140.21 REMARK 500 LEU A 792 46.63 -107.46 REMARK 500 MET A 872 -56.19 75.08 REMARK 500 TYR A 961 -63.43 -128.53 REMARK 500 SER B 619 13.05 -145.78 REMARK 500 PHE B 629 -72.51 -98.19 REMARK 500 ASP B 688 62.20 -102.83 REMARK 500 ASP B 711 84.04 63.20 REMARK 500 ARG B 722 -145.63 -135.16 REMARK 500 HIS B 723 -174.32 65.36 REMARK 500 SEP B 726 -174.73 79.73 REMARK 500 THR B 734 175.78 63.33 REMARK 500 LEU B 779 -0.32 72.54 REMARK 500 GLN B 780 -3.43 -142.84 REMARK 500 LEU B 792 45.98 -106.10 REMARK 500 MET B 872 -55.41 73.08 REMARK 500 THR B 891 78.29 63.88 REMARK 500 TYR B 961 -63.77 -126.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SJV A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SJV B 1001 DBREF 6W3E A 547 977 UNP O75460 ERN1_HUMAN 547 977 DBREF 6W3E B 547 977 UNP O75460 ERN1_HUMAN 547 977 SEQRES 1 A 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 A 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 A 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 A 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 A 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 A 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 A 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 A 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 A 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 A 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 A 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 A 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 A 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 A 431 LYS LYS LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG SEQRES 15 A 431 SEP GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 A 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 A 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 A 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 A 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 A 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 A 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 A 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 A 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 A 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 A 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 A 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 A 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 A 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 A 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 A 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 A 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 A 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 A 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 A 431 ALA LEU SEQRES 1 B 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU SEQRES 2 B 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS SEQRES 3 B 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE SEQRES 4 B 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL SEQRES 5 B 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG SEQRES 6 B 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN SEQRES 7 B 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE SEQRES 8 B 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN SEQRES 9 B 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU SEQRES 10 B 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU SEQRES 11 B 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU SEQRES 12 B 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS SEQRES 13 B 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS SEQRES 14 B 431 LYS LYS LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG SEQRES 15 B 431 SEP GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU SEQRES 16 B 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR SEQRES 17 B 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL SEQRES 18 B 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN SEQRES 19 B 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP SEQRES 20 B 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG SEQRES 21 B 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS SEQRES 22 B 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE SEQRES 23 B 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SEQRES 24 B 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE SEQRES 25 B 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS SEQRES 26 B 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR SEQRES 27 B 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL SEQRES 28 B 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS SEQRES 29 B 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SEQRES 30 B 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG SEQRES 31 B 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU SEQRES 32 B 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE SEQRES 33 B 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP SEQRES 34 B 431 ALA LEU MODRES 6W3E SEP B 724 SER MODIFIED RESIDUE MODRES 6W3E SEP B 726 SER MODIFIED RESIDUE HET SEP B 724 13 HET SEP B 726 13 HET SJV A1001 37 HET SJV B1001 37 HETNAM SEP PHOSPHOSERINE HETNAM SJV METHYL ~{N}-[6-METHYL-5-[3-[2-[[(3~{S})-PIPERIDIN-3- HETNAM 2 SJV YL]AMINO]PYRIMIDIN-4-YL]PYRIDIN-2-YL]OXY-NAPHTHALEN-1- HETNAM 3 SJV YL]CARBAMATE HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 3 SJV 2(C27 H28 N6 O3) HELIX 1 AA1 LEU A 602 GLU A 604 5 3 HELIX 2 AA2 CYS A 605 ASP A 620 1 16 HELIX 3 AA3 LEU A 649 LYS A 656 1 8 HELIX 4 AA4 ASP A 657 LEU A 661 5 5 HELIX 5 AA5 LEU A 663 SER A 681 1 19 HELIX 6 AA6 TYR A 753 SER A 769 1 17 HELIX 7 AA7 GLN A 780 GLY A 788 1 9 HELIX 8 AA8 LYS A 799 ILE A 813 1 15 HELIX 9 AA9 ASP A 816 ARG A 820 5 5 HELIX 10 AB1 SER A 822 LYS A 828 1 7 HELIX 11 AB2 HIS A 829 TRP A 833 5 5 HELIX 12 AB3 SER A 834 ILE A 849 1 16 HELIX 13 AB4 GLY A 856 ARG A 864 1 9 HELIX 14 AB5 GLY A 865 VAL A 870 1 6 HELIX 15 AB6 ASP A 873 ILE A 878 1 6 HELIX 16 AB7 THR A 879 THR A 884 1 6 HELIX 17 AB8 SER A 896 HIS A 910 1 15 HELIX 18 AB9 TYR A 911 LEU A 914 5 4 HELIX 19 AC1 PRO A 915 GLY A 923 1 9 HELIX 20 AC2 PRO A 926 SER A 935 1 10 HELIX 21 AC3 PRO A 938 MET A 948 1 11 HELIX 22 AC4 GLU A 949 GLN A 958 5 10 HELIX 23 AC5 LEU B 602 GLU B 604 5 3 HELIX 24 AC6 CYS B 605 ASP B 620 1 16 HELIX 25 AC7 LEU B 649 GLU B 654 1 6 HELIX 26 AC8 ASP B 657 LEU B 661 5 5 HELIX 27 AC9 LEU B 663 SER B 681 1 19 HELIX 28 AD1 ALA B 739 LEU B 743 5 5 HELIX 29 AD2 TYR B 753 SER B 769 1 17 HELIX 30 AD3 GLN B 780 GLY B 788 1 9 HELIX 31 AD4 LYS B 799 ILE B 813 1 15 HELIX 32 AD5 ASP B 816 ARG B 820 5 5 HELIX 33 AD6 SER B 822 LEU B 827 1 6 HELIX 34 AD7 LYS B 828 TRP B 833 5 6 HELIX 35 AD8 SER B 834 ILE B 849 1 16 HELIX 36 AD9 GLY B 856 ARG B 864 1 9 HELIX 37 AE1 GLY B 865 VAL B 870 1 6 HELIX 38 AE2 ASP B 873 ILE B 878 1 6 HELIX 39 AE3 THR B 879 LEU B 886 1 8 HELIX 40 AE4 ARG B 887 THR B 891 5 5 HELIX 41 AE5 SER B 896 HIS B 910 1 15 HELIX 42 AE6 TYR B 911 LEU B 914 5 4 HELIX 43 AE7 PRO B 915 GLY B 923 1 9 HELIX 44 AE8 PRO B 926 SER B 935 1 10 HELIX 45 AE9 PRO B 938 MET B 948 1 11 HELIX 46 AF1 GLU B 949 GLN B 958 5 10 SHEET 1 AA1 6 VAL A 564 VAL A 566 0 SHEET 2 AA1 6 ILE A 569 GLY A 580 -1 O ILE A 569 N VAL A 566 SHEET 3 AA1 6 THR A 584 PHE A 591 -1 O VAL A 586 N LEU A 577 SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587 SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O ILE A 642 N ALA A 597 SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N GLU A 632 O TYR A 639 SHEET 1 AA2 3 ALA A 647 THR A 648 0 SHEET 2 AA2 3 LEU A 695 ILE A 696 -1 O ILE A 696 N ALA A 647 SHEET 3 AA2 3 ALA A 707 MET A 708 -1 O MET A 708 N LEU A 695 SHEET 1 AA3 6 VAL B 564 VAL B 566 0 SHEET 2 AA3 6 ILE B 569 GLY B 578 -1 O ILE B 569 N VAL B 566 SHEET 3 AA3 6 ILE B 585 PHE B 591 -1 O VAL B 586 N GLY B 578 SHEET 4 AA3 6 ARG B 594 ILE B 601 -1 O VAL B 598 N TYR B 587 SHEET 5 AA3 6 GLN B 638 GLU B 643 -1 O ILE B 642 N ALA B 597 SHEET 6 AA3 6 TYR B 628 LYS B 633 -1 N CYS B 630 O ALA B 641 SHEET 1 AA4 3 ALA B 647 THR B 648 0 SHEET 2 AA4 3 LEU B 695 ILE B 696 -1 O ILE B 696 N ALA B 647 SHEET 3 AA4 3 ALA B 707 MET B 708 -1 O MET B 708 N LEU B 695 SHEET 1 AA5 2 ILE B 684 HIS B 686 0 SHEET 2 AA5 2 CYS B 715 LYS B 717 -1 O LYS B 716 N VAL B 685 LINK C HIS B 723 N SEP B 724 1555 1555 1.33 LINK C SEP B 724 N PHE B 725 1555 1555 1.33 LINK C PHE B 725 N SEP B 726 1555 1555 1.33 LINK C SEP B 726 N ARG B 727 1555 1555 1.33 CISPEP 1 LEU A 925 PRO A 926 0 -9.81 CISPEP 2 LEU B 925 PRO B 926 0 -7.32 SITE 1 AC1 13 ALA A 597 LYS A 599 ALA A 609 GLU A 612 SITE 2 AC1 13 VAL A 613 ILE A 640 ILE A 642 CYS A 645 SITE 3 AC1 13 ALA A 646 GLU A 651 HIS A 692 SER A 710 SITE 4 AC1 13 ASP A 711 SITE 1 AC2 11 ALA B 597 LYS B 599 GLU B 612 ILE B 640 SITE 2 AC2 11 ILE B 642 LEU B 644 CYS B 645 ALA B 646 SITE 3 AC2 11 GLU B 651 SER B 710 ASP B 711 CRYST1 61.670 139.240 63.950 90.00 114.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016215 0.000000 0.007527 0.00000 SCALE2 0.000000 0.007182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017240 0.00000