HEADER TRANSFERASE 09-MAR-20 6W3E
TITLE STRUCTURE OF PHOSPHORYLATED IRE1 IN COMPLEX WITH G-0701
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL-
COMPND 5 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A;
COMPND 6 EC: 2.7.11.1,3.1.26.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ERN1, IRE1;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9
KEYWDS KINASE, UPR, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.FERRI,W.WANG,R.JOACHIM,K.MORTARA
REVDAT 5 06-NOV-24 6W3E 1 REMARK
REVDAT 4 18-OCT-23 6W3E 1 REMARK
REVDAT 3 16-JUN-21 6W3E 1 REMARK
REVDAT 2 30-DEC-20 6W3E 1 JRNL
REVDAT 1 09-DEC-20 6W3E 0
JRNL AUTH E.FERRI,A.LE THOMAS,H.A.WALLWEBER,E.S.DAY,B.T.WALTERS,
JRNL AUTH 2 S.E.KAUFMAN,M.G.BRAUN,K.R.CLARK,M.H.BERESINI,K.MORTARA,
JRNL AUTH 3 Y.A.CHEN,B.CANTER,W.PHUNG,P.S.LIU,A.LAMMENS,A.ASHKENAZI,
JRNL AUTH 4 J.RUDOLPH,W.WANG
JRNL TITL ACTIVATION OF THE IRE1 RNASE THROUGH REMODELING OF THE
JRNL TITL 2 KINASE FRONT POCKET BY ATP-COMPETITIVE LIGANDS.
JRNL REF NAT COMMUN V. 11 6387 2020
JRNL REFN ESSN 2041-1723
JRNL PMID 33318494
JRNL DOI 10.1038/S41467-020-19974-5
REMARK 2
REMARK 2 RESOLUTION. 2.74 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.9_1692
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.94
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 67.4
REMARK 3 NUMBER OF REFLECTIONS : 17403
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.267
REMARK 3 R VALUE (WORKING SET) : 0.262
REMARK 3 FREE R VALUE : 0.317
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010
REMARK 3 FREE R VALUE TEST SET COUNT : 1742
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 6.2641 - 4.9730 0.92 1814 193 0.2626 0.3107
REMARK 3 2 4.9730 - 4.3446 0.95 1842 209 0.2331 0.2818
REMARK 3 3 4.3446 - 3.9475 0.90 1734 193 0.2366 0.3106
REMARK 3 4 3.9475 - 3.6646 0.94 1810 192 0.2670 0.3149
REMARK 3 5 3.6646 - 3.4486 0.94 1833 204 0.2812 0.3393
REMARK 3 6 3.4486 - 3.2759 0.82 1592 174 0.3047 0.3328
REMARK 3 7 3.2759 - 3.1333 0.64 1223 141 0.3128 0.3553
REMARK 3 8 3.1333 - 3.0127 0.47 902 103 0.3444 0.3872
REMARK 3 9 3.0127 - 2.9088 0.34 647 73 0.3530 0.3394
REMARK 3 10 2.9088 - 2.8178 0.18 352 40 0.3604 0.4039
REMARK 3 11 2.8178 - 2.7373 0.04 85 11 0.3488 0.3847
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.250
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 43.82
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.29
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 6182
REMARK 3 ANGLE : 0.777 8372
REMARK 3 CHIRALITY : 0.031 908
REMARK 3 PLANARITY : 0.004 1077
REMARK 3 DIHEDRAL : 12.227 2239
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): -1.3156 -22.0839 28.2090
REMARK 3 T TENSOR
REMARK 3 T11: 0.0767 T22: 0.0857
REMARK 3 T33: 0.1082 T12: 0.0480
REMARK 3 T13: 0.0106 T23: 0.0108
REMARK 3 L TENSOR
REMARK 3 L11: 0.1164 L22: 0.2662
REMARK 3 L33: 0.7716 L12: 0.1100
REMARK 3 L13: 0.0773 L23: -0.4329
REMARK 3 S TENSOR
REMARK 3 S11: 0.0240 S12: -0.0118 S13: 0.0408
REMARK 3 S21: 0.0121 S22: 0.0426 S23: 0.0474
REMARK 3 S31: -0.1765 S32: -0.1287 S33: 0.0305
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : 1
REMARK 3 NCS GROUP : 1
REMARK 3 NCS OPERATOR : 1
REMARK 3 REFERENCE SELECTION: CHAIN A
REMARK 3 SELECTION : CHAIN B
REMARK 3 ATOM PAIRS NUMBER : 4161
REMARK 3 RMSD : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6W3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1000247171.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 31-JAN-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL12-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17906
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.737
REMARK 200 RESOLUTION RANGE LOW (A) : 55.937
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4
REMARK 200 DATA REDUNDANCY : 3.000
REMARK 200 R MERGE (I) : 0.18000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6
REMARK 200 DATA REDUNDANCY IN SHELL : 2.80
REMARK 200 R MERGE FOR SHELL (I) : 1.01600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5HGI
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.81
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.1 M POTASSIUM
REMARK 280 DIHYDROGEN PHOSPHATE, 16 %W/V PEG 8K, 5.2 MM FOS-MEA-10, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 69.62000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 547
REMARK 465 SER A 548
REMARK 465 SER A 549
REMARK 465 PRO A 550
REMARK 465 SER A 551
REMARK 465 LEU A 552
REMARK 465 GLU A 553
REMARK 465 GLN A 554
REMARK 465 ASP A 555
REMARK 465 ASP A 556
REMARK 465 GLY A 557
REMARK 465 ASP A 558
REMARK 465 GLU A 559
REMARK 465 GLU A 560
REMARK 465 THR A 561
REMARK 465 LEU A 714
REMARK 465 CYS A 715
REMARK 465 LYS A 716
REMARK 465 LYS A 717
REMARK 465 LEU A 718
REMARK 465 ALA A 719
REMARK 465 VAL A 720
REMARK 465 GLY A 721
REMARK 465 ARG A 722
REMARK 465 HIS A 723
REMARK 465 SEP A 724
REMARK 465 PHE A 725
REMARK 465 SEP A 726
REMARK 465 ARG A 727
REMARK 465 ARG A 728
REMARK 465 SEP A 729
REMARK 465 GLY A 730
REMARK 465 VAL A 731
REMARK 465 PRO A 732
REMARK 465 GLY A 733
REMARK 465 THR A 734
REMARK 465 MET A 742
REMARK 465 LEU A 743
REMARK 465 SER A 744
REMARK 465 GLU A 745
REMARK 465 ASP A 746
REMARK 465 CYS A 747
REMARK 465 LYS A 748
REMARK 465 GLU A 749
REMARK 465 ASN A 750
REMARK 465 PRO A 751
REMARK 465 ARG A 887
REMARK 465 LYS A 888
REMARK 465 PHE A 889
REMARK 465 ARG A 890
REMARK 465 HIS A 963
REMARK 465 GLU A 964
REMARK 465 PRO A 965
REMARK 465 PRO A 966
REMARK 465 GLU A 967
REMARK 465 PRO A 968
REMARK 465 GLN A 969
REMARK 465 PRO A 970
REMARK 465 PRO A 971
REMARK 465 VAL A 972
REMARK 465 THR A 973
REMARK 465 PRO A 974
REMARK 465 ASP A 975
REMARK 465 ALA A 976
REMARK 465 LEU A 977
REMARK 465 GLY B 547
REMARK 465 SER B 548
REMARK 465 SER B 549
REMARK 465 PRO B 550
REMARK 465 SER B 551
REMARK 465 LEU B 552
REMARK 465 GLU B 553
REMARK 465 GLN B 554
REMARK 465 ASP B 555
REMARK 465 ASP B 556
REMARK 465 GLY B 557
REMARK 465 ASP B 558
REMARK 465 GLU B 559
REMARK 465 GLU B 560
REMARK 465 THR B 561
REMARK 465 SER B 562
REMARK 465 GLY B 580
REMARK 465 ALA B 581
REMARK 465 GLU B 582
REMARK 465 ARG B 728
REMARK 465 SEP B 729
REMARK 465 GLY B 730
REMARK 465 VAL B 731
REMARK 465 SER B 744
REMARK 465 GLU B 745
REMARK 465 ASP B 746
REMARK 465 CYS B 747
REMARK 465 LYS B 748
REMARK 465 GLU B 964
REMARK 465 PRO B 965
REMARK 465 PRO B 966
REMARK 465 GLU B 967
REMARK 465 PRO B 968
REMARK 465 GLN B 969
REMARK 465 PRO B 970
REMARK 465 PRO B 971
REMARK 465 VAL B 972
REMARK 465 THR B 973
REMARK 465 PRO B 974
REMARK 465 ASP B 975
REMARK 465 ALA B 976
REMARK 465 LEU B 977
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ILE A 565 CG1 CG2 CD1
REMARK 470 LYS A 574 CG CD CE NZ
REMARK 470 GLU A 604 CG CD OE1 OE2
REMARK 470 SER A 607 OG
REMARK 470 ARG A 611 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 633 CG CD CE NZ
REMARK 470 GLN A 636 CG CD OE1 NE2
REMARK 470 GLU A 735 CG CD OE1 OE2
REMARK 470 GLN A 818 CG CD OE1 NE2
REMARK 470 LYS A 851 CG CD CE NZ
REMARK 470 ARG A 867 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 876 CG CD OE1 OE2
REMARK 470 VAL A 880 CG1 CG2
REMARK 470 THR A 884 OG1 CG2
REMARK 470 THR A 891 OG1 CG2
REMARK 470 LYS A 893 CG CD CE NZ
REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 917 CG CD OE1 OE2
REMARK 470 GLU A 920 CG CD OE1 OE2
REMARK 470 VAL B 563 CG1 CG2
REMARK 470 LYS B 574 CG CD CE NZ
REMARK 470 HIS B 579 CG ND1 CD2 CE1 NE2
REMARK 470 THR B 584 OG1 CG2
REMARK 470 ILE B 585 CG1 CG2 CD1
REMARK 470 CYS B 605 SG
REMARK 470 PHE B 608 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 LYS B 633 CG CD CE NZ
REMARK 470 ARG B 727 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 749 CG CD OE1 OE2
REMARK 470 ASP B 793 CG OD1 OD2
REMARK 470 GLN B 818 CG CD OE1 NE2
REMARK 470 LYS B 819 CG CD CE NZ
REMARK 470 LYS B 851 CG CD CE NZ
REMARK 470 LEU B 854 CG CD1 CD2
REMARK 470 ARG B 867 CG CD NE CZ NH1 NH2
REMARK 470 LYS B 907 CG CD CE NZ
REMARK 470 ARG B 912 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 917 CG CD OE1 OE2
REMARK 470 ARG B 919 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 920 CG CD OE1 OE2
REMARK 470 LEU B 922 CG CD1 CD2
REMARK 470 HIS B 953 CG ND1 CD2 CE1 NE2
REMARK 470 PHE B 962 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 HIS B 963 CG ND1 CD2 CE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASN B 700 N LYS B 704 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 563 100.74 -164.41
REMARK 500 ALA A 581 -137.54 23.18
REMARK 500 SER A 619 12.99 -145.07
REMARK 500 PHE A 629 -70.50 -97.05
REMARK 500 ASP A 634 -167.63 -114.87
REMARK 500 ASP A 688 62.78 -106.65
REMARK 500 ASP A 711 89.13 60.00
REMARK 500 GLN A 780 -6.71 -140.21
REMARK 500 LEU A 792 46.63 -107.46
REMARK 500 MET A 872 -56.19 75.08
REMARK 500 TYR A 961 -63.43 -128.53
REMARK 500 SER B 619 13.05 -145.78
REMARK 500 PHE B 629 -72.51 -98.19
REMARK 500 ASP B 688 62.20 -102.83
REMARK 500 ASP B 711 84.04 63.20
REMARK 500 ARG B 722 -145.63 -135.16
REMARK 500 HIS B 723 -174.32 65.36
REMARK 500 SEP B 726 -174.73 79.73
REMARK 500 THR B 734 175.78 63.33
REMARK 500 LEU B 779 -0.32 72.54
REMARK 500 GLN B 780 -3.43 -142.84
REMARK 500 LEU B 792 45.98 -106.10
REMARK 500 MET B 872 -55.41 73.08
REMARK 500 THR B 891 78.29 63.88
REMARK 500 TYR B 961 -63.77 -126.33
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SJV A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SJV B 1001
DBREF 6W3E A 547 977 UNP O75460 ERN1_HUMAN 547 977
DBREF 6W3E B 547 977 UNP O75460 ERN1_HUMAN 547 977
SEQRES 1 A 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU
SEQRES 2 A 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS
SEQRES 3 A 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE
SEQRES 4 A 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL
SEQRES 5 A 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG
SEQRES 6 A 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN
SEQRES 7 A 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE
SEQRES 8 A 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN
SEQRES 9 A 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU
SEQRES 10 A 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU
SEQRES 11 A 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU
SEQRES 12 A 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS
SEQRES 13 A 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS
SEQRES 14 A 431 LYS LYS LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG
SEQRES 15 A 431 SEP GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU
SEQRES 16 A 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR
SEQRES 17 A 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL
SEQRES 18 A 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN
SEQRES 19 A 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP
SEQRES 20 A 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG
SEQRES 21 A 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS
SEQRES 22 A 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE
SEQRES 23 A 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL
SEQRES 24 A 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE
SEQRES 25 A 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS
SEQRES 26 A 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR
SEQRES 27 A 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL
SEQRES 28 A 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS
SEQRES 29 A 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY
SEQRES 30 A 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG
SEQRES 31 A 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU
SEQRES 32 A 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE
SEQRES 33 A 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP
SEQRES 34 A 431 ALA LEU
SEQRES 1 B 431 GLY SER SER PRO SER LEU GLU GLN ASP ASP GLY ASP GLU
SEQRES 2 B 431 GLU THR SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS
SEQRES 3 B 431 PRO LYS ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE
SEQRES 4 B 431 VAL TYR ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL
SEQRES 5 B 431 LYS ARG ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG
SEQRES 6 B 431 GLU VAL GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN
SEQRES 7 B 431 VAL ILE ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE
SEQRES 8 B 431 GLN TYR ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN
SEQRES 9 B 431 GLU TYR VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU
SEQRES 10 B 431 GLU PRO ILE THR LEU LEU GLN GLN THR THR SER GLY LEU
SEQRES 11 B 431 ALA HIS LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU
SEQRES 12 B 431 LYS PRO HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS
SEQRES 13 B 431 GLY LYS ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS
SEQRES 14 B 431 LYS LYS LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG
SEQRES 15 B 431 SEP GLY VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU
SEQRES 16 B 431 MET LEU SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR
SEQRES 17 B 431 VAL ASP ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL
SEQRES 18 B 431 ILE SER GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN
SEQRES 19 B 431 ARG GLN ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP
SEQRES 20 B 431 CYS LEU HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG
SEQRES 21 B 431 GLU LEU ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS
SEQRES 22 B 431 ARG PRO SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE
SEQRES 23 B 431 TRP SER LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL
SEQRES 24 B 431 SER ASP ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE
SEQRES 25 B 431 VAL LYS GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS
SEQRES 26 B 431 MET ASP TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR
SEQRES 27 B 431 ASP LEU ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL
SEQRES 28 B 431 ARG ASP LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS
SEQRES 29 B 431 TYR ARG GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY
SEQRES 30 B 431 SER LEU PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG
SEQRES 31 B 431 PHE PRO HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU
SEQRES 32 B 431 LEU CYS SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE
SEQRES 33 B 431 HIS GLU PRO PRO GLU PRO GLN PRO PRO VAL THR PRO ASP
SEQRES 34 B 431 ALA LEU
MODRES 6W3E SEP B 724 SER MODIFIED RESIDUE
MODRES 6W3E SEP B 726 SER MODIFIED RESIDUE
HET SEP B 724 13
HET SEP B 726 13
HET SJV A1001 37
HET SJV B1001 37
HETNAM SEP PHOSPHOSERINE
HETNAM SJV METHYL ~{N}-[6-METHYL-5-[3-[2-[[(3~{S})-PIPERIDIN-3-
HETNAM 2 SJV YL]AMINO]PYRIMIDIN-4-YL]PYRIDIN-2-YL]OXY-NAPHTHALEN-1-
HETNAM 3 SJV YL]CARBAMATE
HETSYN SEP PHOSPHONOSERINE
FORMUL 2 SEP 2(C3 H8 N O6 P)
FORMUL 3 SJV 2(C27 H28 N6 O3)
HELIX 1 AA1 LEU A 602 GLU A 604 5 3
HELIX 2 AA2 CYS A 605 ASP A 620 1 16
HELIX 3 AA3 LEU A 649 LYS A 656 1 8
HELIX 4 AA4 ASP A 657 LEU A 661 5 5
HELIX 5 AA5 LEU A 663 SER A 681 1 19
HELIX 6 AA6 TYR A 753 SER A 769 1 17
HELIX 7 AA7 GLN A 780 GLY A 788 1 9
HELIX 8 AA8 LYS A 799 ILE A 813 1 15
HELIX 9 AA9 ASP A 816 ARG A 820 5 5
HELIX 10 AB1 SER A 822 LYS A 828 1 7
HELIX 11 AB2 HIS A 829 TRP A 833 5 5
HELIX 12 AB3 SER A 834 ILE A 849 1 16
HELIX 13 AB4 GLY A 856 ARG A 864 1 9
HELIX 14 AB5 GLY A 865 VAL A 870 1 6
HELIX 15 AB6 ASP A 873 ILE A 878 1 6
HELIX 16 AB7 THR A 879 THR A 884 1 6
HELIX 17 AB8 SER A 896 HIS A 910 1 15
HELIX 18 AB9 TYR A 911 LEU A 914 5 4
HELIX 19 AC1 PRO A 915 GLY A 923 1 9
HELIX 20 AC2 PRO A 926 SER A 935 1 10
HELIX 21 AC3 PRO A 938 MET A 948 1 11
HELIX 22 AC4 GLU A 949 GLN A 958 5 10
HELIX 23 AC5 LEU B 602 GLU B 604 5 3
HELIX 24 AC6 CYS B 605 ASP B 620 1 16
HELIX 25 AC7 LEU B 649 GLU B 654 1 6
HELIX 26 AC8 ASP B 657 LEU B 661 5 5
HELIX 27 AC9 LEU B 663 SER B 681 1 19
HELIX 28 AD1 ALA B 739 LEU B 743 5 5
HELIX 29 AD2 TYR B 753 SER B 769 1 17
HELIX 30 AD3 GLN B 780 GLY B 788 1 9
HELIX 31 AD4 LYS B 799 ILE B 813 1 15
HELIX 32 AD5 ASP B 816 ARG B 820 5 5
HELIX 33 AD6 SER B 822 LEU B 827 1 6
HELIX 34 AD7 LYS B 828 TRP B 833 5 6
HELIX 35 AD8 SER B 834 ILE B 849 1 16
HELIX 36 AD9 GLY B 856 ARG B 864 1 9
HELIX 37 AE1 GLY B 865 VAL B 870 1 6
HELIX 38 AE2 ASP B 873 ILE B 878 1 6
HELIX 39 AE3 THR B 879 LEU B 886 1 8
HELIX 40 AE4 ARG B 887 THR B 891 5 5
HELIX 41 AE5 SER B 896 HIS B 910 1 15
HELIX 42 AE6 TYR B 911 LEU B 914 5 4
HELIX 43 AE7 PRO B 915 GLY B 923 1 9
HELIX 44 AE8 PRO B 926 SER B 935 1 10
HELIX 45 AE9 PRO B 938 MET B 948 1 11
HELIX 46 AF1 GLU B 949 GLN B 958 5 10
SHEET 1 AA1 6 VAL A 564 VAL A 566 0
SHEET 2 AA1 6 ILE A 569 GLY A 580 -1 O ILE A 569 N VAL A 566
SHEET 3 AA1 6 THR A 584 PHE A 591 -1 O VAL A 586 N LEU A 577
SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587
SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O ILE A 642 N ALA A 597
SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N GLU A 632 O TYR A 639
SHEET 1 AA2 3 ALA A 647 THR A 648 0
SHEET 2 AA2 3 LEU A 695 ILE A 696 -1 O ILE A 696 N ALA A 647
SHEET 3 AA2 3 ALA A 707 MET A 708 -1 O MET A 708 N LEU A 695
SHEET 1 AA3 6 VAL B 564 VAL B 566 0
SHEET 2 AA3 6 ILE B 569 GLY B 578 -1 O ILE B 569 N VAL B 566
SHEET 3 AA3 6 ILE B 585 PHE B 591 -1 O VAL B 586 N GLY B 578
SHEET 4 AA3 6 ARG B 594 ILE B 601 -1 O VAL B 598 N TYR B 587
SHEET 5 AA3 6 GLN B 638 GLU B 643 -1 O ILE B 642 N ALA B 597
SHEET 6 AA3 6 TYR B 628 LYS B 633 -1 N CYS B 630 O ALA B 641
SHEET 1 AA4 3 ALA B 647 THR B 648 0
SHEET 2 AA4 3 LEU B 695 ILE B 696 -1 O ILE B 696 N ALA B 647
SHEET 3 AA4 3 ALA B 707 MET B 708 -1 O MET B 708 N LEU B 695
SHEET 1 AA5 2 ILE B 684 HIS B 686 0
SHEET 2 AA5 2 CYS B 715 LYS B 717 -1 O LYS B 716 N VAL B 685
LINK C HIS B 723 N SEP B 724 1555 1555 1.33
LINK C SEP B 724 N PHE B 725 1555 1555 1.33
LINK C PHE B 725 N SEP B 726 1555 1555 1.33
LINK C SEP B 726 N ARG B 727 1555 1555 1.33
CISPEP 1 LEU A 925 PRO A 926 0 -9.81
CISPEP 2 LEU B 925 PRO B 926 0 -7.32
SITE 1 AC1 13 ALA A 597 LYS A 599 ALA A 609 GLU A 612
SITE 2 AC1 13 VAL A 613 ILE A 640 ILE A 642 CYS A 645
SITE 3 AC1 13 ALA A 646 GLU A 651 HIS A 692 SER A 710
SITE 4 AC1 13 ASP A 711
SITE 1 AC2 11 ALA B 597 LYS B 599 GLU B 612 ILE B 640
SITE 2 AC2 11 ILE B 642 LEU B 644 CYS B 645 ALA B 646
SITE 3 AC2 11 GLU B 651 SER B 710 ASP B 711
CRYST1 61.670 139.240 63.950 90.00 114.90 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016215 0.000000 0.007527 0.00000
SCALE2 0.000000 0.007182 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017240 0.00000