HEADER IMMUNE SYSTEM 11-MAR-20 6W4V TITLE STRUCTURE OF ANTI-FERROPORTIN FAB45D8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB45D8 LIGHT CHAIN; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB45D8 HEAVY CHAIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FERROPORTIN, TRANSPORTER, IRON, HEPCIDIN, ANTIBODY, FAB, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.B.BILLESBOELLE,C.M.AZUMAYA,S.GONEN,A.POWERS,R.C.KRETSCH, AUTHOR 2 S.SCHNEIDER,T.ARVEDSON,R.O.DROR,Y.CHENG,A.MANGLIK REVDAT 4 20-NOV-24 6W4V 1 REMARK REVDAT 3 18-OCT-23 6W4V 1 REMARK REVDAT 2 11-NOV-20 6W4V 1 JRNL REVDAT 1 09-SEP-20 6W4V 0 JRNL AUTH C.B.BILLESBOLLE,C.M.AZUMAYA,R.C.KRETSCH,A.S.POWERS,S.GONEN, JRNL AUTH 2 S.SCHNEIDER,T.ARVEDSON,R.O.DROR,Y.CHENG,A.MANGLIK JRNL TITL STRUCTURE OF HEPCIDIN-BOUND FERROPORTIN REVEALS IRON JRNL TITL 2 HOMEOSTATIC MECHANISMS. JRNL REF NATURE V. 586 807 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32814342 JRNL DOI 10.1038/S41586-020-2668-Z REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.390 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8200 - 3.8200 1.00 4204 152 0.1693 0.2055 REMARK 3 2 3.8200 - 3.0300 1.00 4058 147 0.2194 0.2395 REMARK 3 3 3.0300 - 2.6500 1.00 4047 140 0.2519 0.2755 REMARK 3 4 2.6500 - 2.4100 1.00 4040 142 0.2821 0.3496 REMARK 3 5 2.4100 - 2.2300 0.99 4009 141 0.2966 0.3273 REMARK 3 6 2.2300 - 2.1000 0.86 3476 114 0.3116 0.3461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.279 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3460 REMARK 3 ANGLE : 0.918 4719 REMARK 3 CHIRALITY : 0.054 533 REMARK 3 PLANARITY : 0.005 599 REMARK 3 DIHEDRAL : 18.123 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4718 2.2926 32.8595 REMARK 3 T TENSOR REMARK 3 T11: 0.5901 T22: 0.6482 REMARK 3 T33: 0.4540 T12: 0.1116 REMARK 3 T13: 0.0220 T23: -0.1757 REMARK 3 L TENSOR REMARK 3 L11: 1.5789 L22: 1.0806 REMARK 3 L33: 2.2398 L12: 0.8810 REMARK 3 L13: -0.1025 L23: 0.1995 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.6369 S13: 0.4028 REMARK 3 S21: 0.2649 S22: 0.1635 S23: 0.0048 REMARK 3 S31: 0.1027 S32: 0.1014 S33: 0.1989 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 106 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1877 -10.2709 19.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.3395 T22: 0.3193 REMARK 3 T33: 0.4086 T12: 0.0345 REMARK 3 T13: -0.0288 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 4.6443 L22: 1.5764 REMARK 3 L33: 2.0554 L12: -1.1816 REMARK 3 L13: 0.2246 L23: -0.1358 REMARK 3 S TENSOR REMARK 3 S11: -0.1560 S12: -0.4598 S13: 0.7100 REMARK 3 S21: 0.0841 S22: 0.1272 S23: -0.5483 REMARK 3 S31: -0.0713 S32: 0.2016 S33: -0.0818 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6515 -4.2737 13.1401 REMARK 3 T TENSOR REMARK 3 T11: 0.2810 T22: 0.3608 REMARK 3 T33: 0.3307 T12: 0.0198 REMARK 3 T13: 0.0197 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.4812 L22: 1.1170 REMARK 3 L33: 1.0342 L12: -0.8970 REMARK 3 L13: -0.6722 L23: 0.3197 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: 0.0283 S13: -0.1885 REMARK 3 S21: 0.0677 S22: -0.0049 S23: 0.0990 REMARK 3 S31: 0.0802 S32: 0.0853 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7692 -3.9413 11.3343 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.3482 REMARK 3 T33: 0.3699 T12: 0.0363 REMARK 3 T13: 0.0166 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.8570 L22: 0.9756 REMARK 3 L33: 1.2028 L12: -1.3651 REMARK 3 L13: -0.2601 L23: 1.3155 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: -0.0344 S13: 0.2910 REMARK 3 S21: 0.0998 S22: 0.1755 S23: 0.1458 REMARK 3 S31: 0.2156 S32: -0.0433 S33: 0.0262 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 125 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3789 -23.9815 16.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.4404 T22: 0.4232 REMARK 3 T33: 0.4638 T12: 0.0718 REMARK 3 T13: -0.0947 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.4081 L22: 0.3599 REMARK 3 L33: 0.6012 L12: -0.1901 REMARK 3 L13: -0.1947 L23: -0.2159 REMARK 3 S TENSOR REMARK 3 S11: -0.3936 S12: 0.1634 S13: 0.3430 REMARK 3 S21: 0.3219 S22: -0.5107 S23: -0.6933 REMARK 3 S31: -0.1686 S32: 0.5747 S33: -0.0374 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 140 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9145 -21.6541 13.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.2649 REMARK 3 T33: 0.3853 T12: 0.0053 REMARK 3 T13: -0.0528 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.4727 L22: 1.3120 REMARK 3 L33: 0.3603 L12: -0.7904 REMARK 3 L13: -0.0549 L23: -0.2628 REMARK 3 S TENSOR REMARK 3 S11: 0.1103 S12: 0.0508 S13: -0.4678 REMARK 3 S21: 0.0752 S22: -0.0088 S23: 0.1384 REMARK 3 S31: 0.1738 S32: -0.0235 S33: -0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24736 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6BZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M TRIMETHYLAMINE-N-OXIDE (TMAO), REMARK 280 0.1 M TRIS, PH 8.5, 30% W/V PEG2000 MME, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.45350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE C 221 REMARK 465 THR C 222 REMARK 465 GLN C 223 REMARK 465 ASN C 224 REMARK 465 PRO C 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 27 CE NZ REMARK 470 ASN D 161 CG OD1 ND2 REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 470 LYS C 64 CD CE NZ REMARK 470 ARG C 101 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA D 64 O HOH D 401 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 131 N PRO C 131 CA 0.203 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 131 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO C 131 CA - N - CD ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 32 -129.34 57.19 REMARK 500 ALA D 55 -49.43 75.14 REMARK 500 ALA D 88 -177.21 -178.04 REMARK 500 GLU D 217 71.22 -107.25 REMARK 500 SER C 15 -4.54 85.70 REMARK 500 ASN C 43 13.11 -140.25 REMARK 500 ASN C 102 -51.84 -122.70 REMARK 500 PRO C 131 150.51 -48.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 474 DISTANCE = 6.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W4S RELATED DB: PDB REMARK 900 RELATED ID: EMD-21539 RELATED DB: EMDB DBREF 6W4V D 1 218 PDB 6W4V 6W4V 1 218 DBREF 6W4V C 1 225 PDB 6W4V 6W4V 1 225 SEQRES 1 D 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU PRO VAL SEQRES 2 D 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 D 218 LYS SER VAL SER ALA SER ALA TYR SER TYR MET HIS TRP SEQRES 4 D 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS PRO LEU ILE SEQRES 5 D 218 TYR LEU ALA SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 D 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 D 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 D 218 CYS GLN HIS ASN ARG GLU LEU PRO TYR THR PHE GLY GLY SEQRES 9 D 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 D 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 D 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 D 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 D 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 D 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 D 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 D 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 D 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 C 225 GLU VAL GLN LEU GLN GLU SER GLY PRO GLY LEU ALA LYS SEQRES 2 C 225 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 C 225 SER SER ILE THR SER ASP TYR TRP ASN TRP ILE ARG LYS SEQRES 4 C 225 PHE PRO GLY ASN LYS LEU GLU TYR MET GLY TYR ILE SER SEQRES 5 C 225 TYR SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SER SEQRES 6 C 225 GLN ILE SER ILE THR ARG ASP THR SER LYS ASN HIS TYR SEQRES 7 C 225 TYR LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA SEQRES 8 C 225 THR TYR TYR CYS ALA ARG GLN GLY LEU ARG ASN TRP TYR SEQRES 9 C 225 PHE ASP VAL TRP GLY THR GLY THR THR VAL THR VAL SER SEQRES 10 C 225 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 C 225 PRO VAL CYS GLY GLY THR THR GLY SER SER VAL THR LEU SEQRES 12 C 225 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 C 225 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 C 225 THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR LEU SEQRES 15 C 225 SER SER SER VAL THR VAL THR SER ASN THR TRP PRO SER SEQRES 16 C 225 GLN THR ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 C 225 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG VAL PRO ILE SEQRES 18 C 225 THR GLN ASN PRO HET EDO D 301 4 HET EDO D 302 4 HET EDO D 303 4 HET EDO D 304 4 HET EDO C 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *125(H2 O) HELIX 1 AA1 GLU D 83 ALA D 87 5 5 HELIX 2 AA2 SER D 125 SER D 131 1 7 HELIX 3 AA3 LYS D 187 GLU D 191 1 5 HELIX 4 AA4 THR C 86 THR C 90 5 5 HELIX 5 AA5 SER C 161 SER C 163 5 3 HELIX 6 AA6 PRO C 205 SER C 208 5 4 SHEET 1 AA1 4 LEU D 4 SER D 7 0 SHEET 2 AA1 4 ALA D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AA1 4 ASP D 74 ILE D 79 -1 O LEU D 77 N ILE D 21 SHEET 4 AA1 4 PHE D 66 SER D 71 -1 N SER D 67 O ASN D 78 SHEET 1 AA2 6 SER D 10 SER D 14 0 SHEET 2 AA2 6 THR D 106 LYS D 111 1 O LYS D 111 N VAL D 13 SHEET 3 AA2 6 ALA D 88 HIS D 94 -1 N ALA D 88 O LEU D 108 SHEET 4 AA2 6 MET D 37 GLN D 42 -1 N HIS D 38 O GLN D 93 SHEET 5 AA2 6 LYS D 49 TYR D 53 -1 O LYS D 49 N GLN D 41 SHEET 6 AA2 6 ASN D 57 LEU D 58 -1 O ASN D 57 N TYR D 53 SHEET 1 AA3 2 SER D 30 ALA D 31 0 SHEET 2 AA3 2 TYR D 34 SER D 35 -1 O TYR D 34 N ALA D 31 SHEET 1 AA4 4 THR D 118 PHE D 122 0 SHEET 2 AA4 4 GLY D 133 PHE D 143 -1 O PHE D 139 N SER D 120 SHEET 3 AA4 4 TYR D 177 THR D 186 -1 O LEU D 183 N VAL D 136 SHEET 4 AA4 4 VAL D 163 TRP D 167 -1 N SER D 166 O SER D 180 SHEET 1 AA5 4 SER D 157 ARG D 159 0 SHEET 2 AA5 4 ASN D 149 ILE D 154 -1 N ILE D 154 O SER D 157 SHEET 3 AA5 4 SER D 195 THR D 201 -1 O GLU D 199 N LYS D 151 SHEET 4 AA5 4 ILE D 209 ASN D 214 -1 O ILE D 209 N ALA D 200 SHEET 1 AA6 4 GLN C 3 SER C 7 0 SHEET 2 AA6 4 LEU C 18 THR C 25 -1 O THR C 21 N SER C 7 SHEET 3 AA6 4 HIS C 77 ASN C 83 -1 O LEU C 80 N LEU C 20 SHEET 4 AA6 4 GLN C 66 ASP C 72 -1 N THR C 70 O TYR C 79 SHEET 1 AA7 6 LEU C 11 ALA C 12 0 SHEET 2 AA7 6 THR C 112 VAL C 116 1 O THR C 115 N ALA C 12 SHEET 3 AA7 6 ALA C 91 GLN C 98 -1 N TYR C 93 O THR C 112 SHEET 4 AA7 6 TYR C 33 LYS C 39 -1 N ILE C 37 O TYR C 94 SHEET 5 AA7 6 LEU C 45 ILE C 51 -1 O ILE C 51 N TRP C 34 SHEET 6 AA7 6 THR C 57 TYR C 59 -1 O TYR C 58 N TYR C 50 SHEET 1 AA8 4 LEU C 11 ALA C 12 0 SHEET 2 AA8 4 THR C 112 VAL C 116 1 O THR C 115 N ALA C 12 SHEET 3 AA8 4 ALA C 91 GLN C 98 -1 N TYR C 93 O THR C 112 SHEET 4 AA8 4 PHE C 105 TRP C 108 -1 O VAL C 107 N ARG C 97 SHEET 1 AA9 4 SER C 125 LEU C 129 0 SHEET 2 AA9 4 SER C 140 TYR C 150 -1 O LEU C 146 N TYR C 127 SHEET 3 AA9 4 LEU C 179 THR C 189 -1 O TYR C 180 N TYR C 150 SHEET 4 AA9 4 VAL C 168 THR C 170 -1 N HIS C 169 O SER C 185 SHEET 1 AB1 4 SER C 125 LEU C 129 0 SHEET 2 AB1 4 SER C 140 TYR C 150 -1 O LEU C 146 N TYR C 127 SHEET 3 AB1 4 LEU C 179 THR C 189 -1 O TYR C 180 N TYR C 150 SHEET 4 AB1 4 LEU C 174 GLN C 176 -1 N GLN C 176 O LEU C 179 SHEET 1 AB2 3 THR C 156 TRP C 159 0 SHEET 2 AB2 3 THR C 199 HIS C 204 -1 O ASN C 201 N THR C 158 SHEET 3 AB2 3 THR C 209 LYS C 214 -1 O VAL C 211 N VAL C 202 SSBOND 1 CYS D 23 CYS D 92 1555 1555 2.04 SSBOND 2 CYS D 138 CYS D 198 1555 1555 2.04 SSBOND 3 CYS D 218 CYS C 133 1555 1555 2.04 SSBOND 4 CYS C 22 CYS C 95 1555 1555 2.04 SSBOND 5 CYS C 145 CYS C 200 1555 1555 2.04 CISPEP 1 SER D 7 PRO D 8 0 -2.16 CISPEP 2 HIS D 80 PRO D 81 0 -6.14 CISPEP 3 LEU D 98 PRO D 99 0 -2.00 CISPEP 4 TYR D 144 PRO D 145 0 2.72 CISPEP 5 PHE C 151 PRO C 152 0 -2.64 CISPEP 6 GLU C 153 PRO C 154 0 -2.84 CISPEP 7 TRP C 193 PRO C 194 0 -0.05 SITE 1 AC1 3 GLN D 41 LYS D 43 ASP D 86 SITE 1 AC2 4 ASP D 169 GLN D 170 ASP D 171 SER D 172 SITE 1 AC3 2 SER D 166 TRP D 167 SITE 1 AC4 1 TYR D 36 SITE 1 AC5 1 LEU C 157 CRYST1 73.097 36.907 86.514 90.00 112.99 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013680 0.000000 0.005804 0.00000 SCALE2 0.000000 0.027095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012556 0.00000