HEADER HYDROLASE 12-MAR-20 6W58
TITLE HPGDS COMPLEXED WITH AN AZA-QUINOLINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: H-PGDS,GST CLASS-SIGMA,GLUTATHIONE S-TRANSFERASE,
COMPND 5 GLUTATHIONE-DEPENDENT PGD SYNTHASE,GLUTATHIONE-REQUIRING
COMPND 6 PROSTAGLANDIN D SYNTHASE,PROSTAGLANDIN-H2 D-ISOMERASE;
COMPND 7 EC: 5.3.99.2,2.5.1.18;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HPGDS, GSTS, PGDS, PTGDS2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GLUTATHIONE S-TRANSFERASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.A.ELKINS,P.WARD
REVDAT 3 03-APR-24 6W58 1 REMARK
REVDAT 2 06-MAR-24 6W58 1 REMARK
REVDAT 1 04-NOV-20 6W58 0
JRNL AUTH R.CADILLA,D.N.DEATON,Y.DO,P.A.ELKINS,D.ENNULAT,J.H.GUSS,
JRNL AUTH 2 J.HOLT,M.R.JEUNE,A.G.KING,J.C.KLAPWIJK,H.F.KRAMER,
JRNL AUTH 3 N.J.KRAMER,S.B.LAFFAN,P.I.MASURIA,A.V.MCDOUGAL,
JRNL AUTH 4 P.N.MORTENSON,C.MUSETTI,G.E.PECKHAM,B.L.PIETRAK,C.POOLE,
JRNL AUTH 5 D.J.PRICE,A.R.RENDINA,G.SATI,G.SAXTY,B.G.SHEARER,
JRNL AUTH 6 L.M.SHEWCHUK,H.F.SNEDDON,E.L.STEWART,J.D.STUART,D.N.THOMAS,
JRNL AUTH 7 S.A.THOMSON,P.WARD,J.W.WILSON,T.XU,M.A.YOUNGMAN
JRNL TITL THE EXPLORATION OF AZA-QUINOLINES AS HEMATOPOIETIC
JRNL TITL 2 PROSTAGLANDIN D SYNTHASE (H-PGDS) INHIBITORS WITH LOW BRAIN
JRNL TITL 3 EXPOSURE.
JRNL REF BIOORG.MED.CHEM. V. 28 15791 2020
JRNL REFN ESSN 1464-3391
JRNL PMID 33059303
JRNL DOI 10.1016/J.BMC.2020.115791
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220
REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1
REMARK 3 NUMBER OF REFLECTIONS : 15587
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.188
REMARK 3 R VALUE (WORKING SET) : 0.185
REMARK 3 FREE R VALUE : 0.248
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970
REMARK 3 FREE R VALUE TEST SET COUNT : 1465
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 10.0000 - 5.1600 0.91 2889 93 0.1655 0.1894
REMARK 3 2 5.1600 - 4.0900 0.96 3015 134 0.1372 0.2035
REMARK 3 3 4.0900 - 3.5800 0.93 2898 157 0.1540 0.2142
REMARK 3 4 3.5800 - 3.2500 0.95 2938 149 0.1796 0.2534
REMARK 3 5 3.2500 - 3.0200 0.96 3000 188 0.2072 0.2860
REMARK 3 6 3.0200 - 2.8400 0.95 2943 152 0.2254 0.2803
REMARK 3 7 2.8400 - 2.7000 0.96 2976 160 0.2528 0.3293
REMARK 3 8 2.7000 - 2.5800 0.94 2901 181 0.2866 0.3415
REMARK 3 9 2.5800 - 2.4800 0.81 2564 125 0.3124 0.3448
REMARK 3 10 2.4800 - 2.3950 0.63 1894 126 0.3509 0.4658
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.470
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 18
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:35)
REMARK 3 ORIGIN FOR THE GROUP (A): 59.7100 -0.7549 63.8853
REMARK 3 T TENSOR
REMARK 3 T11: 0.5963 T22: 0.3681
REMARK 3 T33: 0.9301 T12: -0.0582
REMARK 3 T13: 0.2079 T23: -0.0620
REMARK 3 L TENSOR
REMARK 3 L11: 5.8929 L22: 6.1821
REMARK 3 L33: 4.7568 L12: 0.5268
REMARK 3 L13: 1.3720 L23: 1.5610
REMARK 3 S TENSOR
REMARK 3 S11: -0.1246 S12: 0.0996 S13: 0.2286
REMARK 3 S21: -1.2159 S22: 0.3706 S23: -1.3025
REMARK 3 S31: -0.2261 S32: 0.4020 S33: -0.2993
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 36:52)
REMARK 3 ORIGIN FOR THE GROUP (A): 69.1259 6.1032 74.8469
REMARK 3 T TENSOR
REMARK 3 T11: 0.4581 T22: 0.8437
REMARK 3 T33: 1.9268 T12: -0.0166
REMARK 3 T13: 0.0591 T23: -0.1388
REMARK 3 L TENSOR
REMARK 3 L11: 1.9390 L22: 0.0682
REMARK 3 L33: 3.5192 L12: -0.3572
REMARK 3 L13: -0.2230 L23: 0.1579
REMARK 3 S TENSOR
REMARK 3 S11: -0.1624 S12: 0.8692 S13: 0.3170
REMARK 3 S21: -0.1562 S22: 0.1105 S23: -2.6438
REMARK 3 S31: -0.2583 S32: 1.3633 S33: -0.0567
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 53:63)
REMARK 3 ORIGIN FOR THE GROUP (A): 59.1651 10.3734 67.3580
REMARK 3 T TENSOR
REMARK 3 T11: 0.6309 T22: 0.5310
REMARK 3 T33: 1.2270 T12: 0.0181
REMARK 3 T13: 0.2297 T23: 0.0354
REMARK 3 L TENSOR
REMARK 3 L11: 3.0242 L22: 8.8094
REMARK 3 L33: 2.5932 L12: 1.1051
REMARK 3 L13: -2.7704 L23: -0.4143
REMARK 3 S TENSOR
REMARK 3 S11: 0.2364 S12: -0.0689 S13: 1.1757
REMARK 3 S21: -1.3739 S22: -0.4913 S23: -1.4862
REMARK 3 S31: -0.8566 S32: 0.3535 S33: 0.2903
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 64:101)
REMARK 3 ORIGIN FOR THE GROUP (A): 45.4212 0.0359 72.8216
REMARK 3 T TENSOR
REMARK 3 T11: 0.3595 T22: 0.3209
REMARK 3 T33: 0.7406 T12: -0.0176
REMARK 3 T13: -0.1021 T23: -0.0451
REMARK 3 L TENSOR
REMARK 3 L11: 2.6458 L22: 7.0179
REMARK 3 L33: 7.7337 L12: 1.1957
REMARK 3 L13: -2.5287 L23: -1.4627
REMARK 3 S TENSOR
REMARK 3 S11: -0.0520 S12: 0.0681 S13: 0.3570
REMARK 3 S21: -0.2833 S22: -0.0067 S23: 0.7198
REMARK 3 S31: -0.0552 S32: -0.4371 S33: 0.0828
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 102:121)
REMARK 3 ORIGIN FOR THE GROUP (A): 62.9396 -13.0806 86.5403
REMARK 3 T TENSOR
REMARK 3 T11: 0.9687 T22: 0.7907
REMARK 3 T33: 1.3001 T12: 0.2880
REMARK 3 T13: -0.3836 T23: -0.0872
REMARK 3 L TENSOR
REMARK 3 L11: 5.4544 L22: 9.3936
REMARK 3 L33: 6.6791 L12: 3.3307
REMARK 3 L13: -3.5637 L23: -3.4144
REMARK 3 S TENSOR
REMARK 3 S11: 0.2868 S12: -0.6689 S13: 0.4908
REMARK 3 S21: 2.1206 S22: 0.3572 S23: -1.1596
REMARK 3 S31: 0.1407 S32: 0.8420 S33: -0.6216
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:135)
REMARK 3 ORIGIN FOR THE GROUP (A): 43.6217 -15.1876 81.2291
REMARK 3 T TENSOR
REMARK 3 T11: 0.7736 T22: 0.6524
REMARK 3 T33: 1.1129 T12: -0.1815
REMARK 3 T13: 0.2245 T23: 0.1694
REMARK 3 L TENSOR
REMARK 3 L11: 2.1950 L22: 5.6757
REMARK 3 L33: 8.9045 L12: -0.2413
REMARK 3 L13: 3.3144 L23: 0.2570
REMARK 3 S TENSOR
REMARK 3 S11: 0.1166 S12: -0.9324 S13: -0.8070
REMARK 3 S21: 0.9714 S22: -0.1374 S23: 1.6229
REMARK 3 S31: 1.0696 S32: -1.1659 S33: -0.0012
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 136:163)
REMARK 3 ORIGIN FOR THE GROUP (A): 47.0987 -10.8349 70.8808
REMARK 3 T TENSOR
REMARK 3 T11: 0.5102 T22: 0.3692
REMARK 3 T33: 0.9485 T12: -0.0700
REMARK 3 T13: -0.0890 T23: -0.0241
REMARK 3 L TENSOR
REMARK 3 L11: 2.3347 L22: 2.0026
REMARK 3 L33: 6.3066 L12: 2.1586
REMARK 3 L13: 0.5987 L23: 0.9260
REMARK 3 S TENSOR
REMARK 3 S11: 0.7845 S12: -0.0293 S13: -1.0426
REMARK 3 S21: -0.7428 S22: -0.2864 S23: 0.7078
REMARK 3 S31: 0.7874 S32: -0.3422 S33: -0.3871
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 164:183)
REMARK 3 ORIGIN FOR THE GROUP (A): 47.6684 -20.0541 71.8092
REMARK 3 T TENSOR
REMARK 3 T11: 0.6244 T22: 0.4088
REMARK 3 T33: 1.2135 T12: -0.0230
REMARK 3 T13: -0.1876 T23: -0.0237
REMARK 3 L TENSOR
REMARK 3 L11: 4.9602 L22: 7.2628
REMARK 3 L33: 7.4624 L12: 3.1230
REMARK 3 L13: -4.1450 L23: 0.0028
REMARK 3 S TENSOR
REMARK 3 S11: -0.2842 S12: -0.2400 S13: -0.9394
REMARK 3 S21: 0.3860 S22: -0.0651 S23: -0.1903
REMARK 3 S31: 1.0631 S32: -0.1841 S33: 0.3875
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 184:199)
REMARK 3 ORIGIN FOR THE GROUP (A): 58.5474 -11.3362 62.0136
REMARK 3 T TENSOR
REMARK 3 T11: 0.7269 T22: 0.3978
REMARK 3 T33: 1.0975 T12: 0.0315
REMARK 3 T13: 0.1745 T23: -0.1232
REMARK 3 L TENSOR
REMARK 3 L11: 6.2850 L22: 2.7835
REMARK 3 L33: 5.7134 L12: -0.4299
REMARK 3 L13: 0.8140 L23: 0.8863
REMARK 3 S TENSOR
REMARK 3 S11: 0.2304 S12: 0.6203 S13: -0.3535
REMARK 3 S21: -1.2606 S22: -0.1996 S23: -1.3155
REMARK 3 S31: 0.9073 S32: 0.2793 S33: -0.1671
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:24)
REMARK 3 ORIGIN FOR THE GROUP (A): 37.8028 8.6791 89.6055
REMARK 3 T TENSOR
REMARK 3 T11: 0.6817 T22: 0.7448
REMARK 3 T33: 0.8463 T12: -0.0771
REMARK 3 T13: 0.2921 T23: -0.2007
REMARK 3 L TENSOR
REMARK 3 L11: 9.5636 L22: 6.4290
REMARK 3 L33: 3.4988 L12: 2.6161
REMARK 3 L13: -0.2230 L23: 2.2253
REMARK 3 S TENSOR
REMARK 3 S11: 0.4329 S12: -0.6653 S13: 0.7201
REMARK 3 S21: 0.9917 S22: -0.8178 S23: 1.2984
REMARK 3 S31: 0.6402 S32: -0.8844 S33: 0.4468
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 25:38)
REMARK 3 ORIGIN FOR THE GROUP (A): 33.0734 7.0058 92.9430
REMARK 3 T TENSOR
REMARK 3 T11: 0.9727 T22: 1.3721
REMARK 3 T33: 1.4482 T12: -0.1441
REMARK 3 T13: 0.5264 T23: -0.2821
REMARK 3 L TENSOR
REMARK 3 L11: 1.5906 L22: 9.0113
REMARK 3 L33: 2.7755 L12: -0.5613
REMARK 3 L13: -0.1680 L23: -0.3723
REMARK 3 S TENSOR
REMARK 3 S11: -0.2286 S12: -0.9602 S13: -0.0378
REMARK 3 S21: 2.1057 S22: 0.3933 S23: 2.8349
REMARK 3 S31: 0.5292 S32: -1.3340 S33: -0.8417
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 39:52)
REMARK 3 ORIGIN FOR THE GROUP (A): 39.2830 -7.1741 91.4294
REMARK 3 T TENSOR
REMARK 3 T11: 1.1545 T22: 1.0775
REMARK 3 T33: 1.2999 T12: -0.1873
REMARK 3 T13: 0.3319 T23: 0.3120
REMARK 3 L TENSOR
REMARK 3 L11: 3.3018 L22: 2.5084
REMARK 3 L33: 3.7163 L12: -1.7136
REMARK 3 L13: -1.7551 L23: -1.2033
REMARK 3 S TENSOR
REMARK 3 S11: -0.6597 S12: -0.9159 S13: -0.8848
REMARK 3 S21: 1.5455 S22: 1.4536 S23: 1.5124
REMARK 3 S31: 0.6048 S32: -1.1580 S33: -0.2587
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 53:101)
REMARK 3 ORIGIN FOR THE GROUP (A): 44.3379 8.1116 79.0575
REMARK 3 T TENSOR
REMARK 3 T11: 0.3979 T22: 0.4320
REMARK 3 T33: 0.9320 T12: 0.0516
REMARK 3 T13: -0.0173 T23: -0.0029
REMARK 3 L TENSOR
REMARK 3 L11: 5.5465 L22: 3.7738
REMARK 3 L33: 4.6597 L12: 1.7137
REMARK 3 L13: -0.3016 L23: 2.2132
REMARK 3 S TENSOR
REMARK 3 S11: -0.0236 S12: 0.1107 S13: -0.0599
REMARK 3 S21: 0.0541 S22: -0.1387 S23: 1.1426
REMARK 3 S31: 0.0483 S32: -0.6595 S33: 0.1022
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 102:122)
REMARK 3 ORIGIN FOR THE GROUP (A): 60.6591 0.7228 97.6785
REMARK 3 T TENSOR
REMARK 3 T11: 1.2088 T22: 0.7574
REMARK 3 T33: 0.8738 T12: -0.0045
REMARK 3 T13: -0.3530 T23: 0.2337
REMARK 3 L TENSOR
REMARK 3 L11: 4.9516 L22: 4.6459
REMARK 3 L33: 1.5473 L12: 2.2654
REMARK 3 L13: -0.9387 L23: 1.5676
REMARK 3 S TENSOR
REMARK 3 S11: 0.7905 S12: -1.0502 S13: -1.6501
REMARK 3 S21: 1.4559 S22: -0.9821 S23: -0.2434
REMARK 3 S31: 0.5033 S32: 0.8000 S33: 0.3609
REMARK 3 TLS GROUP : 15
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 123:135)
REMARK 3 ORIGIN FOR THE GROUP (A): 62.9982 15.4806 84.5662
REMARK 3 T TENSOR
REMARK 3 T11: 0.5945 T22: 0.5017
REMARK 3 T33: 1.0059 T12: 0.0252
REMARK 3 T13: -0.1368 T23: -0.0904
REMARK 3 L TENSOR
REMARK 3 L11: 2.4564 L22: 5.2012
REMARK 3 L33: 3.9938 L12: 1.6310
REMARK 3 L13: -0.5301 L23: -4.3467
REMARK 3 S TENSOR
REMARK 3 S11: 0.2936 S12: -0.3035 S13: -0.3974
REMARK 3 S21: -0.2206 S22: -0.5093 S23: -0.9125
REMARK 3 S31: -0.0634 S32: 0.7206 S33: 0.2356
REMARK 3 TLS GROUP : 16
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 136:163)
REMARK 3 ORIGIN FOR THE GROUP (A): 51.0893 17.5385 85.4833
REMARK 3 T TENSOR
REMARK 3 T11: 0.4962 T22: 0.3615
REMARK 3 T33: 0.5516 T12: 0.0958
REMARK 3 T13: -0.0549 T23: -0.1116
REMARK 3 L TENSOR
REMARK 3 L11: 6.4505 L22: 6.1110
REMARK 3 L33: 9.7595 L12: 0.3157
REMARK 3 L13: 1.7213 L23: 0.3709
REMARK 3 S TENSOR
REMARK 3 S11: -0.2665 S12: -0.1630 S13: 0.6899
REMARK 3 S21: 0.5266 S22: -0.1431 S23: 0.0806
REMARK 3 S31: -1.0895 S32: -0.3319 S33: 0.3729
REMARK 3 TLS GROUP : 17
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 164:183)
REMARK 3 ORIGIN FOR THE GROUP (A): 56.7990 21.7855 91.5005
REMARK 3 T TENSOR
REMARK 3 T11: 0.8704 T22: 0.5692
REMARK 3 T33: 0.7725 T12: 0.0464
REMARK 3 T13: -0.1839 T23: -0.0684
REMARK 3 L TENSOR
REMARK 3 L11: 3.4255 L22: 3.0517
REMARK 3 L33: 3.1962 L12: 1.4416
REMARK 3 L13: -0.9335 L23: 1.5964
REMARK 3 S TENSOR
REMARK 3 S11: -0.2104 S12: -1.2260 S13: 1.2679
REMARK 3 S21: 1.1607 S22: -0.0340 S23: -0.8110
REMARK 3 S31: -1.0788 S32: 0.0002 S33: 0.2328
REMARK 3 TLS GROUP : 18
REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 184:199)
REMARK 3 ORIGIN FOR THE GROUP (A): 40.5227 17.4336 95.5818
REMARK 3 T TENSOR
REMARK 3 T11: 0.9545 T22: 0.9798
REMARK 3 T33: 1.1441 T12: 0.0092
REMARK 3 T13: 0.5926 T23: -0.6787
REMARK 3 L TENSOR
REMARK 3 L11: 1.2167 L22: 0.7096
REMARK 3 L33: 0.5337 L12: 0.1289
REMARK 3 L13: 0.2031 L23: -0.5609
REMARK 3 S TENSOR
REMARK 3 S11: -0.4321 S12: -0.9914 S13: 0.6986
REMARK 3 S21: 1.5404 S22: 0.0574 S23: 0.9269
REMARK 3 S31: 0.1628 S32: -0.9492 S33: -0.4676
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6W58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1000247090.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-MAR-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5-8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-D
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.07820
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15587
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395
REMARK 200 RESOLUTION RANGE LOW (A) : 67.281
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9
REMARK 200 DATA REDUNDANCY : 3.500
REMARK 200 R MERGE (I) : 0.05400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40
REMARK 200 COMPLETENESS FOR SHELL (%) : 60.4
REMARK 200 DATA REDUNDANCY IN SHELL : 3.20
REMARK 200 R MERGE FOR SHELL (I) : 0.50800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: IN-HOUSE MODEL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.49
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN [10 MG/ML IN 50 MM
REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE HYDROCHLORIDE AT PH 7.5, 50 MM
REMARK 280 SODIUM CHLORIDE, 1 MM DITHIOTHREITOL, 15 MM GLUTATHIONE, AND 1
REMARK 280 MM MAGNESIUM CHLORIDE] WAS MIXED WITH AN EQUAL VOLUME OF
REMARK 280 PRECIPITANT SOLUTION (21% POLY(ETHYLENE GLYCOL) 6000, 1% 1,4-
REMARK 280 DIOXANE, 5.5% GLYCEROL, 10 MM DITHIOTHREITOL, AND 60 MM
REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHANE HYDROCHLORIDE AT PH 8.5, VAPOR
REMARK 280 DIFFUSION, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.64050
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 MET A 1 CG SD CE
REMARK 470 ASN A 3 CG OD1 ND2
REMARK 470 LYS A 5 NZ
REMARK 470 GLN A 28 CG CD OE1 NE2
REMARK 470 GLU A 35 CG CD OE1 OE2
REMARK 470 ASP A 38 CG OD1 OD2
REMARK 470 GLU A 41 CG CD OE1 OE2
REMARK 470 LYS A 50 CG CD CE NZ
REMARK 470 GLU A 55 CD OE1 OE2
REMARK 470 VAL A 56 CG1 CG2
REMARK 470 ASP A 76 CG OD1 OD2
REMARK 470 GLU A 106 CG CD OE1 OE2
REMARK 470 LYS A 107 CG CD CE NZ
REMARK 470 LYS A 108 CG CD CE NZ
REMARK 470 GLN A 109 CG CD OE1 NE2
REMARK 470 ASP A 110 CG OD1 OD2
REMARK 470 VAL A 111 CG1 CG2
REMARK 470 LYS A 112 CE NZ
REMARK 470 GLU A 113 CG CD OE1 OE2
REMARK 470 GLN A 114 CG CD OE1 NE2
REMARK 470 MET A 115 CG SD CE
REMARK 470 ASN A 117 CG OD1 ND2
REMARK 470 GLU A 118 CG CD OE1 OE2
REMARK 470 TYR A 122 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ASN A 123 CG OD1 ND2
REMARK 470 HIS A 126 CG ND1 CD2 CE1 NE2
REMARK 470 GLN A 129 CG CD OE1 NE2
REMARK 470 GLU A 139 CG CD OE1 OE2
REMARK 470 LYS A 164 CD CE NZ
REMARK 470 LYS A 192 CG CD CE NZ
REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 196 CG CD OE1 NE2
REMARK 470 LYS A 198 NZ
REMARK 470 MET B 1 CG SD CE
REMARK 470 ASN B 10 CG OD1 ND2
REMARK 470 GLN B 28 CG CD OE1 NE2
REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2
REMARK 470 ILE B 34 CG1 CG2 CD1
REMARK 470 GLU B 35 CG CD OE1 OE2
REMARK 470 GLN B 36 CG CD OE1 NE2
REMARK 470 ASP B 38 CG OD1 OD2
REMARK 470 GLU B 41 CG CD OE1 OE2
REMARK 470 ILE B 42 CG1 CG2 CD1
REMARK 470 LYS B 43 CG CD CE NZ
REMARK 470 SER B 44 OG
REMARK 470 THR B 45 OG1 CG2
REMARK 470 LEU B 46 CG CD1 CD2
REMARK 470 LYS B 50 CG CD CE NZ
REMARK 470 LYS B 73 CG CD CE NZ
REMARK 470 LYS B 107 CG CD CE NZ
REMARK 470 LYS B 108 CG CD CE NZ
REMARK 470 GLN B 109 OE1 NE2
REMARK 470 VAL B 111 CG1 CG2
REMARK 470 GLU B 113 CG CD OE1 OE2
REMARK 470 GLN B 114 CD OE1 NE2
REMARK 470 MET B 115 CE
REMARK 470 ASN B 117 CG OD1 ND2
REMARK 470 GLU B 118 CG CD OE1 OE2
REMARK 470 LYS B 179 CE NZ
REMARK 470 ASN B 189 CG OD1 ND2
REMARK 470 ILE B 191 CD1
REMARK 470 LYS B 192 CG CD CE NZ
REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2
REMARK 470 GLN B 196 CG CD OE1 NE2
REMARK 470 LYS B 198 CG CD CE NZ
REMARK 470 LEU B 199 CG CD1 CD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 63 106.66 76.24
REMARK 500 LYS A 108 98.52 -68.33
REMARK 500 GLN A 182 -9.63 -59.55
REMARK 500 GLN B 63 96.32 72.66
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SWS A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SWS B 201
DBREF 6W58 A 1 199 UNP O60760 HPGDS_HUMAN 1 199
DBREF 6W58 B 1 199 UNP O60760 HPGDS_HUMAN 1 199
SEQRES 1 A 199 MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY
SEQRES 2 A 199 ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP
SEQRES 3 A 199 ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP
SEQRES 4 A 199 PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO
SEQRES 5 A 199 ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU
SEQRES 6 A 199 ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA
SEQRES 7 A 199 GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE
SEQRES 8 A 199 VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP
SEQRES 9 A 199 ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN
SEQRES 10 A 199 GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP
SEQRES 11 A 199 LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY
SEQRES 12 A 199 ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS
SEQRES 13 A 199 SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP
SEQRES 14 A 199 ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN
SEQRES 15 A 199 ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO
SEQRES 16 A 199 GLN THR LYS LEU
SEQRES 1 B 199 MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG GLY
SEQRES 2 B 199 ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU ASP
SEQRES 3 B 199 ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP TRP
SEQRES 4 B 199 PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE PRO
SEQRES 5 B 199 ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER LEU
SEQRES 6 B 199 ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU ALA
SEQRES 7 B 199 GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA ILE
SEQRES 8 B 199 VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO TRP
SEQRES 9 B 199 ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE ASN
SEQRES 10 B 199 GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN ASP
SEQRES 11 B 199 LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE GLY
SEQRES 12 B 199 ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE CYS
SEQRES 13 B 199 SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU ASP
SEQRES 14 B 199 ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL GLN
SEQRES 15 B 199 ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG PRO
SEQRES 16 B 199 GLN THR LYS LEU
HET GSH A 201 20
HET SWS A 202 27
HET SWS B 201 27
HETNAM GSH GLUTATHIONE
HETNAM SWS 7-(AZETIDIN-1-YL)-~{N}-[4-(2-OXIDANYLPROPAN-2-YL)
HETNAM 2 SWS CYCLOHEXYL]-1,6-NAPHTHYRIDINE-3-CARBOXAMIDE
FORMUL 3 GSH C10 H17 N3 O6 S
FORMUL 4 SWS 2(C21 H28 N4 O2)
FORMUL 6 HOH *22(H2 O)
HELIX 1 AA1 ARG A 12 ARG A 14 5 3
HELIX 2 AA2 ALA A 15 ASP A 26 1 12
HELIX 3 AA3 GLU A 35 ASP A 38 5 4
HELIX 4 AA4 TRP A 39 SER A 44 1 6
HELIX 5 AA5 GLN A 63 LYS A 73 1 11
HELIX 6 AA6 THR A 75 GLY A 79 5 5
HELIX 7 AA7 THR A 81 PHE A 102 1 22
HELIX 8 AA8 LYS A 108 TYR A 122 1 15
HELIX 9 AA9 TYR A 122 GLY A 136 1 15
HELIX 10 AB1 THR A 147 LYS A 164 1 18
HELIX 11 AB2 HIS A 171 ALA A 183 1 13
HELIX 12 AB3 ILE A 184 ARG A 194 1 11
HELIX 13 AB4 ALA B 15 ASP B 26 1 12
HELIX 14 AB5 ASP B 38 LEU B 46 1 9
HELIX 15 AB6 GLN B 63 LYS B 73 1 11
HELIX 16 AB7 THR B 75 GLY B 79 5 5
HELIX 17 AB8 THR B 81 PHE B 102 1 22
HELIX 18 AB9 LYS B 108 TYR B 122 1 15
HELIX 19 AC1 TYR B 122 GLY B 136 1 15
HELIX 20 AC2 THR B 147 LYS B 164 1 18
HELIX 21 AC3 HIS B 171 ALA B 183 1 13
HELIX 22 AC4 ILE B 184 ARG B 194 1 11
SHEET 1 AA1 4 GLU A 30 ILE A 34 0
SHEET 2 AA1 4 TYR A 4 PHE A 9 1 N LEU A 6 O GLU A 30
SHEET 3 AA1 4 ILE A 53 VAL A 56 -1 O ILE A 53 N THR A 7
SHEET 4 AA1 4 LEU A 59 HIS A 62 -1 O LEU A 61 N LEU A 54
SHEET 1 AA2 4 GLU B 30 ILE B 34 0
SHEET 2 AA2 4 TYR B 4 PHE B 9 1 N TYR B 8 O ILE B 34
SHEET 3 AA2 4 ILE B 53 VAL B 56 -1 O GLU B 55 N LYS B 5
SHEET 4 AA2 4 THR B 60 HIS B 62 -1 O LEU B 61 N LEU B 54
CISPEP 1 ILE A 51 PRO A 52 0 5.20
CISPEP 2 ILE B 51 PRO B 52 0 2.92
SITE 1 AC1 9 TYR A 8 PHE A 9 ARG A 14 LYS A 50
SITE 2 AC1 9 ILE A 51 PRO A 52 GLN A 63 SER A 64
SITE 3 AC1 9 ASP B 97
SITE 1 AC2 9 GLY A 13 ARG A 14 GLN A 36 TRP A 39
SITE 2 AC2 9 MET A 99 TRP A 104 TYR A 152 LEU A 199
SITE 3 AC2 9 ASP B 57
SITE 1 AC3 7 GLY B 13 ARG B 14 TRP B 39 MET B 99
SITE 2 AC3 7 TRP B 104 ALA B 105 TYR B 152
CRYST1 47.863 67.281 67.204 90.00 96.83 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020893 0.000000 0.002502 0.00000
SCALE2 0.000000 0.014863 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014986 0.00000