HEADER IMMUNE SYSTEM 12-MAR-20 6W5A TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY TITLE 2 CONTAINING THE FLUORESCENT NON-CANONICAL AMINO ACID L-(7- TITLE 3 HYDROXYCOUMARIN-4-YL)ETHYLGLYCINE AT PH 9.7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 5C8* FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 5C8* FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN, FAB, L-(7-HYDROXYCOUMARIN-4-YL)ETHYLGLYCINE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.N.HENDERSON,C.R.SIMMONS,J.H.MILLS REVDAT 4 06-NOV-24 6W5A 1 REMARK REVDAT 3 15-NOV-23 6W5A 1 LINK REVDAT 2 18-OCT-23 6W5A 1 REMARK REVDAT 1 23-DEC-20 6W5A 0 JRNL AUTH J.N.HENDERSON,C.R.SIMMONS,N.E.FAHMI,J.W.JEFFS,C.R.BORGES, JRNL AUTH 2 J.H.MILLS JRNL TITL STRUCTURAL INSIGHTS INTO HOW PROTEIN ENVIRONMENTS TUNE THE JRNL TITL 2 SPECTROSCOPIC PROPERTIES OF A NONCANONICAL AMINO ACID JRNL TITL 3 FLUOROPHORE. JRNL REF BIOCHEMISTRY V. 59 3401 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32845612 JRNL DOI 10.1021/ACS.BIOCHEM.0C00474 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 37564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3329 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2967 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4550 ; 1.723 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6885 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 7.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;38.393 ;25.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;12.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3814 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 716 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 117 REMARK 3 ORIGIN FOR THE GROUP (A): -39.587 12.978 24.752 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0797 REMARK 3 T33: 0.0576 T12: 0.0128 REMARK 3 T13: 0.0699 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.9781 L22: 1.4733 REMARK 3 L33: 2.3289 L12: -0.1991 REMARK 3 L13: 0.2921 L23: -0.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.1437 S13: 0.0211 REMARK 3 S21: 0.3426 S22: 0.0273 S23: 0.2713 REMARK 3 S31: -0.0305 S32: -0.1605 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 118 H 219 REMARK 3 ORIGIN FOR THE GROUP (A): -30.174 4.985 -2.756 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0579 REMARK 3 T33: 0.0930 T12: 0.0012 REMARK 3 T13: -0.0310 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.2298 L22: 2.0790 REMARK 3 L33: 0.5988 L12: -1.0021 REMARK 3 L13: -0.4141 L23: 0.5124 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.1082 S13: -0.0739 REMARK 3 S21: -0.1106 S22: -0.0936 S23: 0.1553 REMARK 3 S31: 0.0051 S32: -0.0936 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 114 REMARK 3 ORIGIN FOR THE GROUP (A): -17.492 9.206 28.355 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.1767 REMARK 3 T33: 0.0298 T12: 0.0546 REMARK 3 T13: -0.0146 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.3434 L22: 0.4320 REMARK 3 L33: 2.1110 L12: -0.4536 REMARK 3 L13: -0.9056 L23: 0.5490 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: -0.3375 S13: 0.0923 REMARK 3 S21: 0.2283 S22: 0.1532 S23: -0.0734 REMARK 3 S31: 0.2295 S32: 0.2056 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 115 L 216 REMARK 3 ORIGIN FOR THE GROUP (A): -17.636 12.095 -9.744 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.0511 REMARK 3 T33: 0.0483 T12: 0.0127 REMARK 3 T13: -0.0092 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.4207 L22: 1.3151 REMARK 3 L33: 1.8761 L12: -0.3893 REMARK 3 L13: 0.6431 L23: -0.6215 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.1382 S13: 0.0436 REMARK 3 S21: -0.1729 S22: -0.0252 S23: 0.0503 REMARK 3 S31: 0.0343 S32: 0.0532 S33: 0.0077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6W5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 72.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 6BJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1 M CITRIC ACID/SODIUM REMARK 280 CITRATE PH 3.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.93050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.09100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.93050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.09100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 465 LYS H 223 REMARK 465 THR H 224 REMARK 465 HIS H 225 REMARK 465 THR H 226 REMARK 465 ASP L 1 REMARK 465 GLU L 217 REMARK 465 CYS L 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 13 CD CE NZ REMARK 470 LYS H 19 CD CE NZ REMARK 470 TYR H 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS H 63 CG CD CE NZ REMARK 470 LYS H 74 CD CE NZ REMARK 470 ARG H 87 CZ NH1 NH2 REMARK 470 SER H 88 CB OG REMARK 470 GLU H 89 CB CG CD OE1 OE2 REMARK 470 LYS H 134 CE NZ REMARK 470 LYS H 211 CE NZ REMARK 470 LYS H 214 NZ REMARK 470 LYS H 215 CE NZ REMARK 470 LYS H 219 CG CD CE NZ REMARK 470 ILE L 2 CD1 REMARK 470 ARG L 18 CZ NH1 NH2 REMARK 470 ILE L 21 CD1 REMARK 470 ARG L 24 CD NE CZ NH1 NH2 REMARK 470 TYR L 34 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN L 46 OE1 NE2 REMARK 470 GLU L 97 CD OE1 OE2 REMARK 470 DV7 L 98 CG CD CE2 CZ3 CH2 CT OI REMARK 470 DV7 L 98 CH1 CZ2 OH1 CZ1 CE1 OH2 REMARK 470 LYS L 111 CG CD CE NZ REMARK 470 LYS L 130 CE NZ REMARK 470 ARG L 146 CD NE CZ NH1 NH2 REMARK 470 LYS L 187 NZ REMARK 470 LYS L 192 CD CE NZ REMARK 470 LYS L 211 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 198 CB CYS L 198 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 103 -95.41 -114.33 REMARK 500 SER H 137 99.20 -169.18 REMARK 500 ASP H 149 62.11 68.11 REMARK 500 TYR L 36 54.53 -105.56 REMARK 500 ALA L 55 -45.10 75.69 REMARK 500 ASN L 142 60.78 60.78 REMARK 500 ASN L 156 -9.20 73.49 REMARK 500 ASN L 162 18.00 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BJZ RELATED DB: PDB REMARK 900 RELATED ID: 6W4W RELATED DB: PDB DBREF 6W5A H 1 226 PDB 6W5A 6W5A 1 226 DBREF 6W5A L 1 218 PDB 6W5A 6W5A 1 218 SEQRES 1 H 226 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL VAL LYS SEQRES 2 H 226 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 226 TYR ILE PHE THR SER TYR TYR MET TYR TRP VAL LYS GLN SEQRES 4 H 226 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 H 226 PRO SER ASN GLY ASP THR ASN PHE ASN GLU LYS PHE LYS SEQRES 6 H 226 SER LYS ALA THR LEU THR VAL ASP LYS SER ALA SER THR SEQRES 7 H 226 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS THR ARG SER ASP GLY ARG ASN ASP SEQRES 9 H 226 MET ASP SER TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 226 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 226 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 226 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 226 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 226 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 226 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 226 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 226 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 H 226 ASP LYS THR HIS THR SEQRES 1 L 218 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 218 SER PRO GLY GLU ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 GLN ARG VAL SER SER SER THR TYR SER TYR MET HIS TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 LYS TYR ALA SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 L 218 ILE SER SER VAL GLU PRO GLU ASP PHE ALA THR TYR TYR SEQRES 8 L 218 CYS GLN HIS SER TRP GLU DV7 PRO PRO THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET PCA H 1 8 HET DV7 L 98 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM DV7 L-(7-HYDROXYCOUMARIN-4-YL)ETHYLGLYCINE HETSYN DV7 (2S)-2-AMINO-4-(7-HYDROXY-2-OXO-2H-1-BENZOPYRAN-4-YL) HETSYN 2 DV7 BUTANOIC ACID FORMUL 1 PCA C5 H7 N O3 FORMUL 2 DV7 C13 H13 N O5 FORMUL 3 HOH *271(H2 O) HELIX 1 AA1 ILE H 28 TYR H 32 5 5 HELIX 2 AA2 GLU H 62 LYS H 65 5 4 HELIX 3 AA3 LYS H 74 ALA H 76 5 3 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 132 LYS H 134 5 3 HELIX 6 AA6 SER H 161 ALA H 163 5 3 HELIX 7 AA7 SER H 192 LEU H 194 5 3 HELIX 8 AA8 LYS H 206 ASN H 209 5 4 HELIX 9 AA9 GLU L 83 PHE L 87 5 5 HELIX 10 AB1 SER L 125 SER L 131 1 7 HELIX 11 AB2 LYS L 187 GLU L 191 1 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N LEU H 20 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA2 6 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N TYR H 35 O THR H 97 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA2 6 THR H 58 PHE H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 AA3 4 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA3 4 SER H 107 TRP H 108 -1 O SER H 107 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 140 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 AA4 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AA5 4 THR H 136 SER H 137 0 SHEET 2 AA5 4 THR H 140 TYR H 150 -1 O THR H 140 N SER H 137 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA5 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AA6 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 74 ILE L 79 -1 O ILE L 79 N ALA L 19 SHEET 4 AA7 4 PHE L 66 SER L 71 -1 N SER L 69 O THR L 76 SHEET 1 AA8 6 THR L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AA8 6 ALA L 88 HIS L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AA8 6 MET L 37 GLN L 42 -1 N GLN L 42 O THR L 89 SHEET 5 AA8 6 LYS L 49 LYS L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA8 6 ASN L 57 LEU L 58 -1 O ASN L 57 N LYS L 53 SHEET 1 AA9 4 SER L 118 PHE L 122 0 SHEET 2 AA9 4 THR L 133 PHE L 143 -1 O LEU L 139 N PHE L 120 SHEET 3 AA9 4 TYR L 177 SER L 186 -1 O SER L 181 N CYS L 138 SHEET 4 AA9 4 SER L 163 VAL L 167 -1 N GLN L 164 O THR L 182 SHEET 1 AB1 4 ALA L 157 LEU L 158 0 SHEET 2 AB1 4 LYS L 149 VAL L 154 -1 N VAL L 154 O ALA L 157 SHEET 3 AB1 4 VAL L 195 THR L 201 -1 O GLU L 199 N GLN L 151 SHEET 4 AB1 4 VAL L 209 ASN L 214 -1 O VAL L 209 N VAL L 200 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 2 CYS H 145 CYS H 201 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 92 1555 1555 2.00 SSBOND 4 CYS L 138 CYS L 198 1555 1555 1.95 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 LINK C GLU L 97 N DV7 L 98 1555 1555 1.34 LINK C DV7 L 98 N PRO L 99 1555 1555 1.33 CISPEP 1 PHE H 151 PRO H 152 0 -5.86 CISPEP 2 GLU H 153 PRO H 154 0 -0.89 CISPEP 3 SER L 7 PRO L 8 0 -7.78 CISPEP 4 DV7 L 98 PRO L 99 0 -4.12 CISPEP 5 TYR L 144 PRO L 145 0 1.53 CRYST1 91.861 60.182 73.258 90.00 98.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010886 0.000000 0.001713 0.00000 SCALE2 0.000000 0.016616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013818 0.00000 HETATM 1 N PCA H 1 -36.145 -7.969 25.088 1.00 50.04 N ANISOU 1 N PCA H 1 8167 5089 5755 29 267 500 N HETATM 2 CA PCA H 1 -35.411 -6.754 24.760 1.00 48.39 C ANISOU 2 CA PCA H 1 7790 5053 5540 137 264 445 C HETATM 3 CB PCA H 1 -35.204 -6.811 23.245 1.00 48.22 C ANISOU 3 CB PCA H 1 7745 5022 5554 190 196 365 C HETATM 4 CG PCA H 1 -36.176 -7.876 22.745 1.00 49.56 C ANISOU 4 CG PCA H 1 8040 5020 5769 63 166 366 C HETATM 5 CD PCA H 1 -36.543 -8.635 23.999 1.00 51.31 C ANISOU 5 CD PCA H 1 8394 5140 5962 -15 207 458 C HETATM 6 OE PCA H 1 -37.126 -9.710 23.970 1.00 52.90 O ANISOU 6 OE PCA H 1 8748 5175 6175 -112 184 488 O HETATM 7 C PCA H 1 -36.165 -5.491 25.025 1.00 46.48 C ANISOU 7 C PCA H 1 7358 4946 5353 36 333 440 C HETATM 8 O PCA H 1 -37.295 -5.346 24.545 1.00 45.45 O ANISOU 8 O PCA H 1 7154 4807 5307 -97 353 429 O