HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-MAR-20 6W6D TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN ARGININE N-METHYLTRANSFERASE 6 TITLE 2 (PRMT6) IN COMPLEX WITH SGC6870 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 6,HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS PRMT6 AND SGC6870 INHIBITOR, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,H.ZENG,A.DONG,J.JIN,Y.SHEN,H.U.KANISKAN,A.HUTCHINSON, AUTHOR 2 A.SEITOVA,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,P.J.BROWN,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 16-OCT-24 6W6D 1 REMARK REVDAT 3 18-OCT-23 6W6D 1 REMARK REVDAT 2 23-FEB-22 6W6D 1 JRNL REVDAT 1 29-APR-20 6W6D 0 JRNL AUTH Y.SHEN,F.LI,M.M.SZEWCZYK,L.HALABELIAN,I.CHAU,M.S.ERAM, JRNL AUTH 2 C.DELA SENA,K.S.PARK,F.MENG,H.CHEN,H.ZENG,A.DONG,H.WU, JRNL AUTH 3 V.V.TRUSH,D.MCLEOD,C.A.ZEPEDA-VELAZQUEZ,R.M.CAMPBELL, JRNL AUTH 4 M.M.MADER,B.M.WATSON,M.SCHAPIRA,C.H.ARROWSMITH,R.AL-AWAR, JRNL AUTH 5 D.BARSYTE-LOVEJOY,H.U.KANISKAN,P.J.BROWN,M.VEDADI,J.JIN JRNL TITL A FIRST-IN-CLASS, HIGHLY SELECTIVE AND CELL-ACTIVE JRNL TITL 2 ALLOSTERIC INHIBITOR OF PROTEIN ARGININE METHYLTRANSFERASE JRNL TITL 3 6. JRNL REF J.MED.CHEM. V. 64 3697 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33591753 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02160 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.042 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2687 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2458 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 1.446 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5654 ; 1.318 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;31.926 ;20.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;15.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3153 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 601 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6W6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5WCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG3350, 4% (V/V) TASCIMATE REMARK 280 TM PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.30150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 47.30150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.04700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.30150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.02350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.30150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.07050 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.30150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.30150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.04700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 47.30150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 81.07050 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 47.30150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.02350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.60300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 GLU A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 465 THR A 39 REMARK 465 LYS A 40 REMARK 465 ARG A 41 REMARK 465 GLU A 42 REMARK 465 ARG A 43 REMARK 465 ASP A 44 REMARK 465 GLN A 45 REMARK 465 GLU A 300 REMARK 465 SER A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 47 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 TYR A 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 52 OG REMARK 470 ARG A 64 CD NE CZ NH1 NH2 REMARK 470 GLU A 122 CD OE1 OE2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 131 OD1 OD2 REMARK 470 GLN A 199 CD OE1 NE2 REMARK 470 SER A 209 OG REMARK 470 LYS A 212 CE NZ REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLN A 265 CD OE1 NE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 348 CG OD1 OD2 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 LYS A 367 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 282 OE1 GLU A 332 2.13 REMARK 500 O LEU A 178 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -71.60 -49.64 REMARK 500 CYS A 221 -9.82 -58.06 REMARK 500 LYS A 319 -136.40 48.81 REMARK 500 ARG A 347 -66.43 -137.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T9A A 402 DBREF 6W6D A 1 375 UNP Q96LA8 ANM6_HUMAN 1 375 SEQADV 6W6D GLY A 0 UNP Q96LA8 EXPRESSION TAG SEQADV 6W6D VAL A 194 UNP Q96LA8 ALA 194 CONFLICT SEQRES 1 A 376 GLY MET SER GLN PRO LYS LYS ARG LYS LEU GLU SER GLY SEQRES 2 A 376 GLY GLY GLY GLU GLY GLY GLU GLY THR GLU GLU GLU ASP SEQRES 3 A 376 GLY ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO ARG ARG SEQRES 4 A 376 THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU CYS TYR SEQRES 5 A 376 SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP ARG SEQRES 6 A 376 VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU ARG ASN SEQRES 7 A 376 TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL GLY SEQRES 8 A 376 ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN ALA SEQRES 9 A 376 GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA ILE SEQRES 10 A 376 TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN GLY LEU SEQRES 11 A 376 GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU THR SEQRES 12 A 376 VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SER GLU SEQRES 13 A 376 TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SER SEQRES 14 A 376 SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU GLY SEQRES 15 A 376 GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE ILE VAL SEQRES 16 A 376 PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY PHE SEQRES 17 A 376 TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SER SEQRES 18 A 376 CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET GLY HIS SEQRES 19 A 376 SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU ASP VAL SEQRES 20 A 376 LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SER SEQRES 21 A 376 ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY VAL GLY SEQRES 22 A 376 GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO MET SEQRES 23 A 376 HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE PRO GLY SEQRES 24 A 376 GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SER PRO SEQRES 25 A 376 PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU TYR SEQRES 26 A 376 LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR ASP VAL SEQRES 27 A 376 SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP ASN PRO SEQRES 28 A 376 ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL GLY ASP SEQRES 29 A 376 GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP HET SAH A 401 26 HET T9A A 402 29 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM T9A (5R)-4-(5-BROMOTHIOPHENE-2-CARBONYL)-5-(3,5- HETNAM 2 T9A DIMETHYLPHENYL)-7-METHYL-1,3,4,5-TETRAHYDRO-2H-1,4- HETNAM 3 T9A BENZODIAZEPIN-2-ONE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 T9A C23 H21 BR N2 O2 S FORMUL 4 HOH *132(H2 O) HELIX 1 AA1 CYS A 50 ASP A 63 1 14 HELIX 2 AA2 ASP A 63 ARG A 76 1 14 HELIX 3 AA3 ASN A 77 ARG A 82 1 6 HELIX 4 AA4 GLY A 94 ALA A 103 1 10 HELIX 5 AA5 ILE A 116 ASN A 127 1 12 HELIX 6 AA6 GLY A 160 TRP A 177 1 18 HELIX 7 AA7 ASP A 198 PHE A 207 1 10 HELIX 8 AA8 GLN A 210 GLY A 216 1 7 HELIX 9 AA9 MET A 219 CYS A 221 5 3 HELIX 10 AB1 LEU A 222 GLY A 232 1 11 HELIX 11 AB2 SER A 242 VAL A 246 5 5 HELIX 12 AB3 GLY A 262 GLU A 268 1 7 SHEET 1 AA1 5 VAL A 133 PRO A 137 0 SHEET 2 AA1 5 ARG A 107 GLU A 112 1 N ALA A 110 O LEU A 136 SHEET 3 AA1 5 THR A 85 VAL A 89 1 N ASP A 88 O TYR A 109 SHEET 4 AA1 5 VAL A 149 SER A 154 1 O VAL A 153 N LEU A 87 SHEET 5 AA1 5 LEU A 178 LEU A 185 1 O LYS A 179 N VAL A 149 SHEET 1 AA2 5 VAL A 237 GLN A 239 0 SHEET 2 AA2 5 GLN A 320 VAL A 331 -1 O LEU A 322 N VAL A 237 SHEET 3 AA2 5 ALA A 283 PHE A 296 -1 N MET A 285 O VAL A 329 SHEET 4 AA2 5 SER A 188 ILE A 196 -1 N GLU A 190 O GLN A 293 SHEET 5 AA2 5 GLN A 251 GLU A 257 -1 O LEU A 256 N ALA A 189 SHEET 1 AA3 4 VAL A 237 GLN A 239 0 SHEET 2 AA3 4 GLN A 320 VAL A 331 -1 O LEU A 322 N VAL A 237 SHEET 3 AA3 4 ALA A 283 PHE A 296 -1 N MET A 285 O VAL A 329 SHEET 4 AA3 4 LEU A 305 SER A 308 -1 O LEU A 305 N PHE A 296 SHEET 1 AA4 4 VAL A 271 SER A 278 0 SHEET 2 AA4 4 ASP A 336 LEU A 344 -1 O LEU A 343 N VAL A 271 SHEET 3 AA4 4 LEU A 353 VAL A 361 -1 O LEU A 356 N THR A 342 SHEET 4 AA4 4 LYS A 367 MET A 373 -1 O PHE A 371 N VAL A 355 SSBOND 1 CYS A 50 CYS A 229 1555 6565 2.61 CISPEP 1 LEU A 185 PRO A 186 0 -2.98 CISPEP 2 ASN A 349 PRO A 350 0 -6.22 SITE 1 AC1 18 ARG A 66 GLY A 90 ALA A 91 GLY A 92 SITE 2 AC1 18 THR A 93 LEU A 96 GLU A 112 ALA A 113 SITE 3 AC1 18 SER A 114 PRO A 139 VAL A 140 GLU A 141 SITE 4 AC1 18 GLU A 155 MET A 166 SER A 169 HOH A 534 SITE 5 AC1 18 HOH A 569 HOH A 592 SITE 1 AC2 10 TRP A 156 GLY A 158 TYR A 159 GLY A 160 SITE 2 AC2 10 HIS A 163 GLU A 164 LEU A 256 PHE A 292 SITE 3 AC2 10 LEU A 343 PRO A 345 CRYST1 94.603 94.603 108.094 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009251 0.00000