HEADER VIRAL PROTEIN/DNA 18-MAR-20 6W7A TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE TITLE 2 MUTANT E119D BOUND TO DNA OLIGOMER TAGCAT (UNCLEAVED, 5MM OVERNIGHT TITLE 3 DNA SOAK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X,POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*AP*GP*CP*AP*T)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: SSDNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 VARIANT: H1N1/CALIFORNIA/2009; SOURCE 7 GENE: PA-X, PA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS NUCLEASE, INFLUENZA, DNA OLIGOMER, UNCLEAVED, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,G.KUMAR,T.WEBB,S.W.WHITE REVDAT 4 25-OCT-23 6W7A 1 REMARK REVDAT 3 21-JUN-23 6W7A 1 REMARK REVDAT 2 03-MAR-21 6W7A 1 JRNL REVDAT 1 03-FEB-21 6W7A 0 JRNL AUTH G.KUMAR,M.CUYPERS,R.R.WEBBY,T.R.WEBB,S.W.WHITE JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 ENDONUCLEASE ACTIVITY OF THE INFLUENZA VIRUS CAP-SNATCHING JRNL TITL 3 MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 49 1609 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33469660 JRNL DOI 10.1093/NAR/GKAA1294 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 16274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9500 - 3.7900 1.00 2745 157 0.1608 0.1916 REMARK 3 2 3.7900 - 3.0100 1.00 2599 154 0.1678 0.1966 REMARK 3 3 3.0100 - 2.6300 1.00 2578 133 0.1880 0.2035 REMARK 3 4 2.6300 - 2.3900 1.00 2580 145 0.1826 0.2280 REMARK 3 5 2.3900 - 2.2200 1.00 2584 114 0.1955 0.2377 REMARK 3 6 2.2200 - 2.0900 0.93 2370 115 0.2380 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.0053 199.2047 275.7782 REMARK 3 T TENSOR REMARK 3 T11: 0.6293 T22: 0.5525 REMARK 3 T33: 0.2569 T12: 0.0081 REMARK 3 T13: 0.0964 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.1501 L22: 2.8061 REMARK 3 L33: 6.4916 L12: 1.0808 REMARK 3 L13: 2.0777 L23: 1.6706 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: 0.7250 S13: -0.1276 REMARK 3 S21: -0.2655 S22: -0.0470 S23: -0.0197 REMARK 3 S31: 0.6759 S32: 0.6158 S33: -0.1068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 135.1559 197.7374 291.1521 REMARK 3 T TENSOR REMARK 3 T11: 0.5464 T22: 0.3980 REMARK 3 T33: 0.1925 T12: -0.0245 REMARK 3 T13: 0.0714 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 6.2492 L22: 1.9732 REMARK 3 L33: 1.4306 L12: 0.7581 REMARK 3 L13: -0.0891 L23: -0.8961 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: -0.2015 S13: -0.1209 REMARK 3 S21: 0.0735 S22: -0.2073 S23: -0.1339 REMARK 3 S31: 0.4092 S32: 0.1509 S33: 0.0587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 119.2384 200.7041 290.5035 REMARK 3 T TENSOR REMARK 3 T11: 0.4644 T22: 0.3570 REMARK 3 T33: 0.1797 T12: -0.1147 REMARK 3 T13: 0.1195 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 4.1951 L22: 1.0821 REMARK 3 L33: 5.8430 L12: -0.8305 REMARK 3 L13: 2.6806 L23: -1.5008 REMARK 3 S TENSOR REMARK 3 S11: 0.2128 S12: -0.2861 S13: 0.1448 REMARK 3 S21: -0.1228 S22: -0.1919 S23: 0.0615 REMARK 3 S31: 0.4683 S32: -0.5412 S33: -0.2410 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.6735 186.8869 284.6415 REMARK 3 T TENSOR REMARK 3 T11: 1.2018 T22: 0.6333 REMARK 3 T33: 0.7121 T12: -0.1723 REMARK 3 T13: 0.0775 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 5.2042 L22: 5.7877 REMARK 3 L33: 3.7641 L12: 3.1997 REMARK 3 L13: 4.2353 L23: 3.7052 REMARK 3 S TENSOR REMARK 3 S11: 0.2580 S12: 0.2521 S13: -1.8996 REMARK 3 S21: -0.8456 S22: -0.0241 S23: -0.6869 REMARK 3 S31: 2.1600 S32: 0.1611 S33: 0.8916 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFMAC5 THEN RIGID BODY WITH REMARK 3 PHENIX.REFINE FOR FINAL CHECK REMARK 4 REMARK 4 6W7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.65050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.01200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.65050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.01200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.65050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.01200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.65050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.01200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.65050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.01200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.65050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.01200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.65050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.01200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.65050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.65050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.01200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 465 DT B -1 REMARK 465 DT B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 23 CD OE1 OE2 REMARK 470 LYS A 34 NZ REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 LYS A 102 NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 158 NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 135 1.28 -63.95 REMARK 500 ASN A 136 -56.34 -122.92 REMARK 500 LYS A 139 -76.53 48.51 REMARK 500 SER A 140 69.72 -15.40 REMARK 500 GLU A 141 -57.15 -16.12 REMARK 500 THR A 162 -56.86 71.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 90.9 REMARK 620 3 ASP A 119 OD1 169.8 85.4 REMARK 620 4 ILE A 120 O 86.3 96.7 84.7 REMARK 620 5 HOH B 102 O 92.3 174.0 92.3 88.5 REMARK 620 6 HOH B 104 O 98.9 85.8 90.3 174.1 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W5P RELATED DB: PDB REMARK 900 RNA BOUND VARIANT DBREF1 6W7A A 1 50 UNP A0A4P2TE19_9INFA DBREF2 6W7A A A0A4P2TE19 1 50 DBREF 6W7A A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 DBREF 6W7A B -1 6 PDB 6W7A 6W7A -1 6 SEQADV 6W7A MET A -19 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A GLY A -18 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A SER A -17 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A SER A -16 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -15 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -14 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -13 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -12 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -11 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A -10 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A SER A -9 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A SER A -8 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A GLY A -7 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A LEU A -6 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A VAL A -5 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A PRO A -4 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A ARG A -3 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A GLY A -2 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A SER A -1 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A HIS A 0 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 6W7A GLY A 51 UNP A0A4P2TE1 LINKER SEQADV 6W7A GLY A 52 UNP A0A4P2TE1 LINKER SEQADV 6W7A SER A 53 UNP A0A4P2TE1 LINKER SEQADV 6W7A ASP A 119 UNP C6H0Y9 GLU 119 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE ASP ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG SEQRES 1 B 8 DT DT DA DG DC DA DT DT HET GOL A 201 6 HET GOL A 202 6 HET MN A 203 1 HET SO4 A 204 5 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 MN MN 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 SER A 184 1 21 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 203 1555 1555 2.40 LINK OD2 ASP A 108 MN MN A 203 1555 1555 2.11 LINK OD1 ASP A 119 MN MN A 203 1555 1555 2.34 LINK O ILE A 120 MN MN A 203 1555 1555 2.12 LINK MN MN A 203 O HOH B 102 1555 1555 2.21 LINK MN MN A 203 O HOH B 104 1555 1555 2.15 SITE 1 AC1 6 GLU A 154 TYR A 161 GLU A 165 ARG A 168 SITE 2 AC1 6 LYS A 172 HOH A 367 SITE 1 AC2 3 ILE A 78 GLU A 80 ARG A 82 SITE 1 AC3 6 HIS A 41 ASP A 108 ASP A 119 ILE A 120 SITE 2 AC3 6 HOH B 102 HOH B 104 SITE 1 AC4 4 GLY A 52 SER A 53 ARG A 75 LYS A 113 CRYST1 89.301 89.301 134.024 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011198 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007461 0.00000