HEADER TRANSFERASE 19-MAR-20 6W7I TITLE LMFPPS MUTANT T164W IN COMPLEX WITH 476A, IPP & CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.1,2.5.1.10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: FPPS, LMJF_22_1360; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FPPS, FARNESYL DIPHOSPHATE SYNTHASE, ISOPRENOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAHESHWARI,Y.S.KIM,S.ARIPIRALA,S.B.GABELLI REVDAT 3 30-OCT-24 6W7I 1 REMARK REVDAT 2 18-OCT-23 6W7I 1 REMARK REVDAT 1 07-OCT-20 6W7I 0 JRNL AUTH S.MAHESHWARI,Y.S.KIM,S.ARIPIRALA,M.MURPHY,L.M.AMZEL, JRNL AUTH 2 S.B.GABELLI JRNL TITL IDENTIFYING STRUCTURAL DETERMINANTS OF PRODUCT SPECIFICITY JRNL TITL 2 IN LEISHMANIA MAJOR FARNESYL DIPHOSPHATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 59 2751 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32584028 JRNL DOI 10.1021/ACS.BIOCHEM.0C00432 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 36846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6050 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8221 ; 1.165 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 4.915 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;38.063 ;24.489 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1038 ;13.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ; 9.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 911 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4524 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3399 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4240 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 487 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 21 ; 0.145 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6W7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000246500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 77.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4JZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 15-25 % PEG 8000, 100-200 REMARK 280 MM CAACETATE, VAPOR DIFFUSION, TEMPERATURE 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.98850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 270 CD GLU A 270 OE2 -0.087 REMARK 500 GLU B 97 CD GLU B 97 OE1 -0.075 REMARK 500 GLU B 97 CD GLU B 97 OE2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 77.62 53.60 REMARK 500 VAL A 119 -73.69 -113.28 REMARK 500 THR A 120 153.24 77.61 REMARK 500 THR A 208 -53.62 -125.74 REMARK 500 VAL B 119 -73.52 -115.35 REMARK 500 THR B 120 155.50 77.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 101 -11.47 REMARK 500 MET A 101 -11.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 102 OD2 75.1 REMARK 620 3 476 A 406 O12 95.4 165.1 REMARK 620 4 476 A 406 O15 82.3 78.8 88.6 REMARK 620 5 HOH A 531 O 88.0 96.2 94.9 170.0 REMARK 620 6 HOH A 669 O 170.8 95.8 93.8 97.8 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 102 OD1 85.5 REMARK 620 3 ASP A 102 OD2 78.7 45.4 REMARK 620 4 476 A 406 O15 102.3 122.8 80.2 REMARK 620 5 HOH A 526 O 92.0 68.0 113.1 162.4 REMARK 620 6 HOH A 536 O 82.8 151.7 153.1 84.9 86.7 REMARK 620 7 HOH A 665 O 169.5 100.2 111.6 82.1 82.1 88.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 476 A 406 O11 92.2 REMARK 620 3 476 A 406 O14 98.1 81.6 REMARK 620 4 HOH A 504 O 84.1 92.1 173.3 REMARK 620 5 HOH A 540 O 91.1 168.0 86.5 99.8 REMARK 620 6 HOH A 599 O 166.6 97.7 92.4 86.5 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD2 REMARK 620 2 ASP B 102 OD2 94.2 REMARK 620 3 476 B 405 O14 82.9 78.2 REMARK 620 4 476 B 405 O11 86.4 163.3 85.3 REMARK 620 5 HOH B 550 O 85.6 98.5 167.7 98.2 REMARK 620 6 HOH B 682 O 178.8 84.7 96.8 94.7 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD1 REMARK 620 2 ASP B 102 OD1 89.2 REMARK 620 3 ASP B 102 OD2 89.0 47.9 REMARK 620 4 476 B 405 O14 93.6 123.5 75.8 REMARK 620 5 HOH B 517 O 76.8 148.3 156.3 86.2 REMARK 620 6 HOH B 588 O 91.2 69.7 117.6 165.9 82.1 REMARK 620 7 HOH B 647 O 171.3 99.3 98.2 83.4 94.8 89.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 250 OD2 REMARK 620 2 476 B 405 O16 98.9 REMARK 620 3 476 B 405 O12 95.9 84.5 REMARK 620 4 HOH B 527 O 88.5 85.7 169.7 REMARK 620 5 HOH B 573 O 77.5 176.2 94.4 95.6 REMARK 620 6 HOH B 595 O 162.6 95.0 95.9 82.0 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPR B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 476 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FME B 1 and ALA B 2 DBREF 6W7I A 2 362 UNP Q4QBL1 Q4QBL1_LEIMA 2 362 DBREF 6W7I B 2 362 UNP Q4QBL1 Q4QBL1_LEIMA 2 362 SEQADV 6W7I FME A 1 UNP Q4QBL1 EXPRESSION TAG SEQADV 6W7I TRP A 164 UNP Q4QBL1 THR 164 ENGINEERED MUTATION SEQADV 6W7I FME B 1 UNP Q4QBL1 EXPRESSION TAG SEQADV 6W7I TRP B 164 UNP Q4QBL1 THR 164 ENGINEERED MUTATION SEQRES 1 A 362 FME ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 A 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 A 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 A 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 A 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 A 362 ALA HIS PHE LEU VAL GLU ASP ASP ILE MET ASP HIS SER SEQRES 9 A 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 A 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 A 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 A 362 HIS ASP VAL ASP LEU THR THR TRP ILE GLY GLN LEU TYR SEQRES 14 A 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 A 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 A 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 A 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 A 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 A 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 A 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 A 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 A 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 A 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 A 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS SEQRES 1 B 362 FME ALA HIS MET GLU ARG PHE GLN LYS VAL TYR GLU GLU SEQRES 2 B 362 VAL GLN GLU PHE LEU LEU GLY ASP ALA GLU LYS ARG PHE SEQRES 3 B 362 GLU MET ASP VAL HIS ARG LYS GLY TYR LEU LYS SER MET SEQRES 4 B 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR ASN ARG GLY SEQRES 5 B 362 LEU CYS VAL VAL ASP VAL ALA GLU ALA MET ALA LYS ASP SEQRES 6 B 362 THR GLN MET ASP ALA ALA ALA MET GLU ARG VAL LEU HIS SEQRES 7 B 362 ASP ALA CYS VAL CYS GLY TRP MET ILE GLU MET LEU GLN SEQRES 8 B 362 ALA HIS PHE LEU VAL GLU ASP ASP ILE MET ASP HIS SER SEQRES 9 B 362 LYS THR ARG ARG GLY LYS PRO CYS TRP TYR LEU HIS PRO SEQRES 10 B 362 GLY VAL THR ALA GLN VAL ALA ILE ASN ASP GLY LEU ILE SEQRES 11 B 362 LEU LEU ALA TRP ALA THR GLN MET ALA LEU HIS TYR PHE SEQRES 12 B 362 ALA ASP ARG PRO PHE LEU ALA GLU VAL LEU ARG VAL PHE SEQRES 13 B 362 HIS ASP VAL ASP LEU THR THR TRP ILE GLY GLN LEU TYR SEQRES 14 B 362 ASP VAL THR SER MET VAL ASP SER ALA LYS LEU ASP ALA SEQRES 15 B 362 LYS VAL ALA HIS ALA ASN THR THR ASP TYR VAL GLU TYR SEQRES 16 B 362 THR PRO PHE ASN HIS ARG ARG ILE VAL VAL TYR LYS THR SEQRES 17 B 362 ALA TYR TYR THR TYR TRP LEU PRO LEU VAL MET GLY LEU SEQRES 18 B 362 LEU VAL SER GLY THR LEU GLU LYS VAL ASP LYS LYS ALA SEQRES 19 B 362 THR HIS LYS VAL ALA MET VAL MET GLY GLU TYR PHE GLN SEQRES 20 B 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 B 362 LYS LEU GLY LYS ILE GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 B 362 CYS SER TRP LEU ALA VAL THR PHE LEU THR THR ALA PRO SEQRES 23 B 362 ALA GLU LYS VAL ALA GLU PHE LYS ALA ASN TYR GLY SER SEQRES 24 B 362 THR ASP PRO ALA ALA VAL ALA VAL ILE LYS GLN LEU TYR SEQRES 25 B 362 THR GLU GLN ASN LEU LEU ALA ARG PHE GLU GLU TYR GLU SEQRES 26 B 362 LYS ALA VAL VAL ALA GLU VAL GLU GLN LEU ILE ALA ALA SEQRES 27 B 362 LEU GLU ALA GLN ASN ALA ALA PHE ALA ALA SER VAL LYS SEQRES 28 B 362 VAL LEU TRP SER LYS THR TYR LYS ARG GLN LYS HET FME A 1 10 HET FME B 1 10 HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET ACT A 404 7 HET IPR A 405 14 HET 476 A 406 20 HET PEG A 407 7 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HET IPR B 404 14 HET 476 B 405 20 HETNAM FME N-FORMYLMETHIONINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM IPR ISOPENTYL PYROPHOSPHATE HETNAM 476 3-BUTYL-1-(2,2-DIPHOSPHONOETHYL)PYRIDINIUM HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 FME 2(C6 H11 N O3 S) FORMUL 3 CA 6(CA 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 IPR 2(C5 H14 O7 P2) FORMUL 8 476 2(C11 H20 N O6 P2 1+) FORMUL 9 PEG C4 H10 O3 FORMUL 15 HOH *440(H2 O) HELIX 1 AA1 HIS A 3 GLU A 27 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 GLN A 67 1 19 HELIX 4 AA4 ASP A 69 ASP A 102 1 34 HELIX 5 AA5 TRP A 113 HIS A 116 5 4 HELIX 6 AA6 VAL A 119 PHE A 143 1 25 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 THR A 226 VAL A 230 5 5 HELIX 13 AB4 ASP A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 SER A 275 ALA A 285 1 11 HELIX 16 AB7 PRO A 286 ALA A 295 1 10 HELIX 17 AB8 ASP A 301 GLN A 315 1 15 HELIX 18 AB9 ASN A 316 ASN A 343 1 28 HELIX 19 AC1 ASN A 343 TYR A 358 1 16 HELIX 20 AC2 HIS B 3 GLU B 27 1 25 HELIX 21 AC3 ASP B 29 LEU B 45 1 17 HELIX 22 AC4 TYR B 49 THR B 66 1 18 HELIX 23 AC5 ASP B 69 ASP B 102 1 34 HELIX 24 AC6 TRP B 113 HIS B 116 5 4 HELIX 25 AC7 VAL B 119 PHE B 143 1 25 HELIX 26 AC8 PHE B 148 THR B 172 1 25 HELIX 27 AC9 ASP B 176 LEU B 180 5 5 HELIX 28 AD1 THR B 196 THR B 208 1 13 HELIX 29 AD2 THR B 208 TYR B 213 1 6 HELIX 30 AD3 TYR B 213 SER B 224 1 12 HELIX 31 AD4 THR B 226 VAL B 230 5 5 HELIX 32 AD5 ASP B 231 THR B 257 1 27 HELIX 33 AD6 PRO B 258 GLY B 263 1 6 HELIX 34 AD7 SER B 275 ALA B 285 1 11 HELIX 35 AD8 PRO B 286 TYR B 297 1 12 HELIX 36 AD9 ASP B 301 GLN B 315 1 15 HELIX 37 AE1 ASN B 316 ALA B 341 1 26 HELIX 38 AE2 ASN B 343 TYR B 358 1 16 SHEET 1 AA1 2 THR A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 SHEET 1 AA2 2 THR B 106 ARG B 107 0 SHEET 2 AA2 2 LYS B 110 PRO B 111 -1 O LYS B 110 N ARG B 107 LINK C FME A 1 N ALA A 2 1555 1555 1.33 LINK C FME B 1 N ALA B 2 1555 1555 1.33 LINK OD2 ASP A 98 CA CA A 402 1555 1555 2.35 LINK OD1 ASP A 98 CA CA A 403 1555 1555 2.49 LINK OD2 ASP A 102 CA CA A 402 1555 1555 2.31 LINK OD1 ASP A 102 CA CA A 403 1555 1555 3.01 LINK OD2 ASP A 102 CA CA A 403 1555 1555 2.29 LINK OD2 ASP A 250 CA CA A 401 1555 1555 2.25 LINK CA CA A 401 O11 476 A 406 1555 1555 2.20 LINK CA CA A 401 O14 476 A 406 1555 1555 2.26 LINK CA CA A 401 O HOH A 504 1555 1555 2.46 LINK CA CA A 401 O HOH A 540 1555 1555 2.43 LINK CA CA A 401 O HOH A 599 1555 1555 2.47 LINK CA CA A 402 O12 476 A 406 1555 1555 2.22 LINK CA CA A 402 O15 476 A 406 1555 1555 2.45 LINK CA CA A 402 O HOH A 531 1555 1555 2.21 LINK CA CA A 402 O HOH A 669 1555 1555 2.41 LINK CA CA A 403 O15 476 A 406 1555 1555 2.40 LINK CA CA A 403 O HOH A 526 1555 1555 2.53 LINK CA CA A 403 O HOH A 536 1555 1555 2.41 LINK CA CA A 403 O HOH A 665 1555 1555 2.44 LINK OD2 ASP B 98 CA CA B 402 1555 1555 2.35 LINK OD1 ASP B 98 CA CA B 403 1555 1555 2.44 LINK OD2 ASP B 102 CA CA B 402 1555 1555 2.32 LINK OD1 ASP B 102 CA CA B 403 1555 1555 2.80 LINK OD2 ASP B 102 CA CA B 403 1555 1555 2.45 LINK OD2 ASP B 250 CA CA B 401 1555 1555 2.28 LINK CA CA B 401 O16 476 B 405 1555 1555 2.22 LINK CA CA B 401 O12 476 B 405 1555 1555 2.29 LINK CA CA B 401 O HOH B 527 1555 1555 2.49 LINK CA CA B 401 O HOH B 573 1555 1555 2.65 LINK CA CA B 401 O HOH B 595 1555 1555 2.34 LINK CA CA B 402 O14 476 B 405 1555 1555 2.46 LINK CA CA B 402 O11 476 B 405 1555 1555 2.13 LINK CA CA B 402 O HOH B 550 1555 1555 2.20 LINK CA CA B 402 O HOH B 682 1555 1555 2.38 LINK CA CA B 403 O14 476 B 405 1555 1555 2.46 LINK CA CA B 403 O HOH B 517 1555 1555 2.48 LINK CA CA B 403 O HOH B 588 1555 1555 2.41 LINK CA CA B 403 O HOH B 647 1555 1555 2.42 SITE 1 AC1 5 ASP A 250 476 A 406 HOH A 504 HOH A 540 SITE 2 AC1 5 HOH A 599 SITE 1 AC2 6 ASP A 98 ASP A 102 CA A 403 476 A 406 SITE 2 AC2 6 HOH A 531 HOH A 669 SITE 1 AC3 7 ASP A 98 ASP A 102 CA A 402 476 A 406 SITE 2 AC3 7 HOH A 526 HOH A 536 HOH A 665 SITE 1 AC4 7 ASP A 254 GLY A 266 ASP A 268 ILE A 269 SITE 2 AC4 7 GLU A 270 VAL A 305 LYS A 309 SITE 1 AC5 16 GLY A 47 LYS A 48 ARG A 51 GLN A 91 SITE 2 AC5 16 ARG A 108 TYR A 211 PHE A 246 GLN A 247 SITE 3 AC5 16 ASP A 250 476 A 406 HOH A 523 HOH A 550 SITE 4 AC5 16 HOH A 597 HOH A 600 HOH A 604 HOH A 640 SITE 1 AC6 18 PHE A 94 ASP A 98 MET A 101 ASP A 102 SITE 2 AC6 18 ARG A 107 TRP A 164 GLN A 167 LYS A 207 SITE 3 AC6 18 THR A 208 ASP A 250 LYS A 264 CA A 401 SITE 4 AC6 18 CA A 402 CA A 403 IPR A 405 PEG A 407 SITE 5 AC6 18 HOH A 536 HOH A 553 SITE 1 AC7 12 ASP A 99 SER A 104 THR A 106 ARG A 107 SITE 2 AC7 12 ASP A 254 LYS A 264 ILE A 265 GLY A 266 SITE 3 AC7 12 476 A 406 HOH A 504 HOH A 619 HOH A 669 SITE 1 AC8 5 ASP B 250 476 B 405 HOH B 527 HOH B 573 SITE 2 AC8 5 HOH B 595 SITE 1 AC9 6 ASP B 98 ASP B 102 CA B 403 476 B 405 SITE 2 AC9 6 HOH B 550 HOH B 682 SITE 1 AD1 7 ASP B 98 ASP B 102 CA B 402 476 B 405 SITE 2 AD1 7 HOH B 517 HOH B 588 HOH B 647 SITE 1 AD2 16 GLY B 47 LYS B 48 ARG B 51 GLN B 91 SITE 2 AD2 16 ARG B 108 TYR B 211 PHE B 246 GLN B 247 SITE 3 AD2 16 ASP B 250 476 B 405 HOH B 535 HOH B 553 SITE 4 AD2 16 HOH B 555 HOH B 576 HOH B 601 HOH B 611 SITE 1 AD3 17 PHE B 94 ASP B 98 MET B 101 ASP B 102 SITE 2 AD3 17 ARG B 107 GLN B 167 LYS B 207 THR B 208 SITE 3 AD3 17 ASP B 250 LYS B 264 CA B 401 CA B 402 SITE 4 AD3 17 CA B 403 IPR B 404 HOH B 517 HOH B 569 SITE 5 AD3 17 HOH B 600 SITE 1 AD4 5 HIS B 3 MET B 4 HOH B 645 HOH B 661 SITE 2 AD4 5 HOH B 713 CRYST1 58.932 79.977 81.175 90.00 106.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016969 0.000000 0.004992 0.00000 SCALE2 0.000000 0.012504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012841 0.00000 HETATM 1 N FME A 1 20.929 14.390 41.161 1.00 31.92 N HETATM 2 CN FME A 1 20.957 13.540 40.066 1.00 32.20 C HETATM 3 O1 FME A 1 20.384 13.783 39.010 1.00 32.32 O HETATM 4 CA FME A 1 21.800 15.553 40.964 1.00 31.56 C HETATM 5 CB FME A 1 21.374 16.656 41.932 1.00 32.42 C HETATM 6 CG FME A 1 20.031 17.243 41.511 1.00 35.35 C HETATM 7 SD FME A 1 19.051 17.666 42.918 1.00 41.34 S HETATM 8 CE FME A 1 17.818 18.632 42.105 1.00 39.57 C HETATM 9 C FME A 1 23.237 15.161 41.184 1.00 30.20 C HETATM 10 O FME A 1 23.560 14.536 42.197 1.00 29.97 O