HEADER LIGASE/TRANSFERASE 19-MAR-20 6W7O TITLE TERNARY COMPLEX STRUCTURE - BTK CIAP COMPOUND 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR COMPND 5 KINASE,BPK,BRUTON TYROSINE KINASE; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: CELLULAR INHIBITOR OF APOPTOSIS 1,C-IAP1,IAP HOMOLOG B, COMPND 12 INHIBITOR OF APOPTOSIS PROTEIN 2,HIAP2,RING FINGER PROTEIN 48,RING- COMPND 13 TYPE E3 UBIQUITIN TRANSFERASE BIRC2,TNFR2-TRAF-SIGNALING COMPLEX COMPND 14 PROTEIN 2; COMPND 15 EC: 2.3.2.27; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTK, AGMX1, ATK, BPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 2 RZ-2014; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1491790; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BIRC2, API1, MIHB, RNF48; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CIAP E3 PROTAC, LIGASE, LIGASE-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.F.CALABRESE,J.S.SCHIEMER REVDAT 2 18-OCT-23 6W7O 1 REMARK REVDAT 1 18-NOV-20 6W7O 0 JRNL AUTH M.F.CALABRESE,J.S.SCHIEMER,R.HORST,Y.MENG,J.MONTGOMERY,Y.XU, JRNL AUTH 2 X.FENG,K.BORZILLERI,D.P.UCCELLO,C.LEVERETT,S.BROWN,Y.CHE, JRNL AUTH 3 M.F.BROWN,M.M.HAYWARD,A.M.GILBERT,M.C.NOE JRNL TITL STRUCTURAL CHARACTERIZATION OF BTK:PROTAC:CIAP TERNARY JRNL TITL 2 COMPLEXES: FROM SNAPSHOTS TO ENSEMBLES JRNL REF NAT.CHEM.BIOL. 2020 JRNL REFN ESSN 1552-4469 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 38603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3116 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.26550 REMARK 3 B22 (A**2) : 0.90120 REMARK 3 B33 (A**2) : -5.16670 REMARK 3 B12 (A**2) : -3.51680 REMARK 3 B13 (A**2) : -2.56360 REMARK 3 B23 (A**2) : 1.04840 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.294 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.292 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.212 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6001 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8126 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2096 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1099 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6001 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 732 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7265 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|396 - A|656 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.7904 31.3508 -11.3046 REMARK 3 T TENSOR REMARK 3 T11: -0.0787 T22: -0.1402 REMARK 3 T33: 0.0605 T12: -0.0182 REMARK 3 T13: -0.1270 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.6457 L22: 0.5228 REMARK 3 L33: 0.7516 L12: -0.0350 REMARK 3 L13: -0.1631 L23: 0.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.1200 S13: 0.0601 REMARK 3 S21: 0.0565 S22: 0.0075 S23: 0.0348 REMARK 3 S31: 0.0197 S32: -0.0199 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|396 - B|658 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.5486 28.6709 -60.5493 REMARK 3 T TENSOR REMARK 3 T11: -0.0814 T22: -0.1260 REMARK 3 T33: 0.0670 T12: -0.0123 REMARK 3 T13: -0.1172 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.4748 L22: 0.4664 REMARK 3 L33: 0.6756 L12: 0.0320 REMARK 3 L13: 0.0010 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.1112 S13: -0.0131 REMARK 3 S21: -0.0504 S22: -0.0169 S23: -0.0118 REMARK 3 S31: 0.0359 S32: 0.0527 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|258 - C|350 C|401 - C|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.9939 55.4010 -19.7755 REMARK 3 T TENSOR REMARK 3 T11: -0.1411 T22: -0.1957 REMARK 3 T33: 0.1693 T12: -0.0298 REMARK 3 T13: -0.1124 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.7914 L22: 1.7750 REMARK 3 L33: 3.0825 L12: 0.7123 REMARK 3 L13: 1.1799 L23: 2.1641 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.0708 S13: -0.0680 REMARK 3 S21: 0.0194 S22: 0.0512 S23: -0.2573 REMARK 3 S31: -0.1447 S32: -0.1821 S33: -0.0916 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|258 - D|349 D|401 - D|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 6.2414 53.2915 -51.7141 REMARK 3 T TENSOR REMARK 3 T11: -0.1438 T22: -0.2081 REMARK 3 T33: 0.1494 T12: -0.0159 REMARK 3 T13: -0.1078 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.8820 L22: 1.7674 REMARK 3 L33: 4.1496 L12: -0.8375 REMARK 3 L13: 1.5255 L23: -2.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.0590 S13: -0.0882 REMARK 3 S21: -0.0913 S22: 0.0265 S23: 0.2250 REMARK 3 S31: -0.1290 S32: 0.1394 S33: -0.0767 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 94.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KMN; 5P9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM AMMONIUM SULFATE, 100 MM BIS REMARK 280 -TRIS PH 6.7, 29% PE15/4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 383 REMARK 465 ALA A 384 REMARK 465 PRO A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 465 ALA A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 GLY A 391 REMARK 465 TYR A 392 REMARK 465 GLY A 393 REMARK 465 SER A 394 REMARK 465 TRP A 395 REMARK 465 GLU A 657 REMARK 465 GLU A 658 REMARK 465 SER A 659 REMARK 465 SER B 383 REMARK 465 ALA B 384 REMARK 465 PRO B 385 REMARK 465 SER B 386 REMARK 465 THR B 387 REMARK 465 ALA B 388 REMARK 465 GLY B 389 REMARK 465 LEU B 390 REMARK 465 GLY B 391 REMARK 465 TYR B 392 REMARK 465 GLY B 393 REMARK 465 SER B 394 REMARK 465 TRP B 395 REMARK 465 SER B 659 REMARK 465 GLY C 254 REMARK 465 SER C 255 REMARK 465 GLY C 256 REMARK 465 PRO C 257 REMARK 465 ARG C 351 REMARK 465 TYR C 352 REMARK 465 GLY D 254 REMARK 465 SER D 255 REMARK 465 GLY D 256 REMARK 465 PRO D 257 REMARK 465 GLY D 350 REMARK 465 ARG D 351 REMARK 465 TYR D 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 ARG A 422 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 424 CG CD OE1 NE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 ASP A 440 CG OD1 OD2 REMARK 470 GLN A 459 CG CD OE1 NE2 REMARK 470 GLN A 467 CG CD OE1 NE2 REMARK 470 GLU A 550 CG CD OE1 OE2 REMARK 470 SER A 554 OG REMARK 470 GLU A 624 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 LYS B 406 CG CD CE NZ REMARK 470 GLN B 412 CG CD OE1 NE2 REMARK 470 GLN B 467 CG CD OE1 NE2 REMARK 470 GLU B 550 CG CD OE1 OE2 REMARK 470 SER B 554 OG REMARK 470 ARG B 600 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 657 CG CD OE1 OE2 REMARK 470 GLU B 658 CG CD OE1 OE2 REMARK 470 ARG C 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 334 CG CD OE1 OE2 REMARK 470 GLU C 347 CG CD OE1 OE2 REMARK 470 ARG D 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 334 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 401 33.42 -86.48 REMARK 500 PHE A 413 -17.07 80.83 REMARK 500 TRP A 421 -116.84 -108.75 REMARK 500 GLN A 424 37.60 -145.21 REMARK 500 ARG A 520 -16.73 78.96 REMARK 500 ASP A 521 49.77 -145.24 REMARK 500 ARG B 520 -12.46 79.63 REMARK 500 ASP B 521 42.36 -146.70 REMARK 500 SER B 575 -169.83 -160.26 REMARK 500 ASP B 656 -0.01 75.59 REMARK 500 ASN C 301 -117.62 53.63 REMARK 500 PRO D 284 32.40 -86.64 REMARK 500 ASN D 301 -112.95 48.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 531 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 306 SG REMARK 620 2 CYS C 309 SG 108.3 REMARK 620 3 HIS C 326 NE2 114.9 108.3 REMARK 620 4 CYS C 333 SG 121.2 107.5 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 306 SG REMARK 620 2 CYS D 309 SG 113.8 REMARK 620 3 HIS D 326 NE2 103.4 107.8 REMARK 620 4 CYS D 333 SG 119.2 111.1 99.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TL7 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TL7 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W74 RELATED DB: PDB DBREF 6W7O A 384 659 UNP Q06187 BTK_HUMAN 384 659 DBREF 6W7O B 384 659 UNP Q06187 BTK_HUMAN 384 659 DBREF 6W7O C 260 352 UNP Q13490 BIRC2_HUMAN 260 352 DBREF 6W7O D 260 352 UNP Q13490 BIRC2_HUMAN 260 352 SEQADV 6W7O SER A 383 UNP Q06187 EXPRESSION TAG SEQADV 6W7O SER B 383 UNP Q06187 EXPRESSION TAG SEQADV 6W7O GLY C 254 UNP Q13490 EXPRESSION TAG SEQADV 6W7O SER C 255 UNP Q13490 EXPRESSION TAG SEQADV 6W7O GLY C 256 UNP Q13490 EXPRESSION TAG SEQADV 6W7O PRO C 257 UNP Q13490 EXPRESSION TAG SEQADV 6W7O GLY C 258 UNP Q13490 EXPRESSION TAG SEQADV 6W7O SER C 259 UNP Q13490 EXPRESSION TAG SEQADV 6W7O GLY D 254 UNP Q13490 EXPRESSION TAG SEQADV 6W7O SER D 255 UNP Q13490 EXPRESSION TAG SEQADV 6W7O GLY D 256 UNP Q13490 EXPRESSION TAG SEQADV 6W7O PRO D 257 UNP Q13490 EXPRESSION TAG SEQADV 6W7O GLY D 258 UNP Q13490 EXPRESSION TAG SEQADV 6W7O SER D 259 UNP Q13490 EXPRESSION TAG SEQRES 1 A 277 SER ALA PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP SEQRES 2 A 277 GLU ILE ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU SEQRES 3 A 277 GLY THR GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP SEQRES 4 A 277 ARG GLY GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU SEQRES 5 A 277 GLY SER MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS SEQRES 6 A 277 VAL MET MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 277 TYR GLY VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE SEQRES 8 A 277 THR GLU TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU SEQRES 9 A 277 ARG GLU MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU SEQRES 10 A 277 GLU MET CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU SEQRES 11 A 277 GLU SER LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG SEQRES 12 A 277 ASN CYS LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER SEQRES 13 A 277 ASP PHE GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR SEQRES 14 A 277 THR SER SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER SEQRES 15 A 277 PRO PRO GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SEQRES 16 A 277 SER ASP ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE SEQRES 17 A 277 TYR SER LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SEQRES 18 A 277 SER GLU THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU SEQRES 19 A 277 TYR ARG PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE SEQRES 20 A 277 MET TYR SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO SEQRES 21 A 277 THR PHE LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET SEQRES 22 A 277 ASP GLU GLU SER SEQRES 1 B 277 SER ALA PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP SEQRES 2 B 277 GLU ILE ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU SEQRES 3 B 277 GLY THR GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP SEQRES 4 B 277 ARG GLY GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU SEQRES 5 B 277 GLY SER MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS SEQRES 6 B 277 VAL MET MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 277 TYR GLY VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE SEQRES 8 B 277 THR GLU TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU SEQRES 9 B 277 ARG GLU MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU SEQRES 10 B 277 GLU MET CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU SEQRES 11 B 277 GLU SER LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG SEQRES 12 B 277 ASN CYS LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER SEQRES 13 B 277 ASP PHE GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR SEQRES 14 B 277 THR SER SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER SEQRES 15 B 277 PRO PRO GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SEQRES 16 B 277 SER ASP ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE SEQRES 17 B 277 TYR SER LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SEQRES 18 B 277 SER GLU THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU SEQRES 19 B 277 TYR ARG PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE SEQRES 20 B 277 MET TYR SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO SEQRES 21 B 277 THR PHE LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET SEQRES 22 B 277 ASP GLU GLU SER SEQRES 1 C 99 GLY SER GLY PRO GLY SER SER ILE SER ASN LEU SER MET SEQRES 2 C 99 GLN THR HIS ALA ALA ARG MET ARG THR PHE MET TYR TRP SEQRES 3 C 99 PRO SER SER VAL PRO VAL GLN PRO GLU GLN LEU ALA SER SEQRES 4 C 99 ALA GLY PHE TYR TYR VAL GLY ARG ASN ASP ASP VAL LYS SEQRES 5 C 99 CYS PHE CYS CYS ASP GLY GLY LEU ARG CYS TRP GLU SER SEQRES 6 C 99 GLY ASP ASP PRO TRP VAL GLU HIS ALA LYS TRP PHE PRO SEQRES 7 C 99 ARG CYS GLU PHE LEU ILE ARG MET LYS GLY GLN GLU PHE SEQRES 8 C 99 VAL ASP GLU ILE GLN GLY ARG TYR SEQRES 1 D 99 GLY SER GLY PRO GLY SER SER ILE SER ASN LEU SER MET SEQRES 2 D 99 GLN THR HIS ALA ALA ARG MET ARG THR PHE MET TYR TRP SEQRES 3 D 99 PRO SER SER VAL PRO VAL GLN PRO GLU GLN LEU ALA SER SEQRES 4 D 99 ALA GLY PHE TYR TYR VAL GLY ARG ASN ASP ASP VAL LYS SEQRES 5 D 99 CYS PHE CYS CYS ASP GLY GLY LEU ARG CYS TRP GLU SER SEQRES 6 D 99 GLY ASP ASP PRO TRP VAL GLU HIS ALA LYS TRP PHE PRO SEQRES 7 D 99 ARG CYS GLU PHE LEU ILE ARG MET LYS GLY GLN GLU PHE SEQRES 8 D 99 VAL ASP GLU ILE GLN GLY ARG TYR HET TL7 A 701 79 HET TL7 B 701 79 HET ZN C 401 1 HET ZN D 401 1 HETNAM TL7 [5-({[(3S)-2-(N-METHYL-L-ALANYL-3-METHYL-L-VALYL)-3- HETNAM 2 TL7 {[(1R)-1,2,3,4-TETRAHYDRONAPHTHALEN-1-YL]CARBAMOYL}-1, HETNAM 3 TL7 2,3,4-TETRAHYDROISOQUINOLIN-7-YL]OXY}METHYL)PYRAZIN-2- HETNAM 4 TL7 YL]METHYL (3R)-3-{5-AMINO-4-CARBAMOYL-3-[4-(2,4- HETNAM 5 TL7 DIFLUOROPHENOXY)PHENYL]-1H-PYRAZOL-1-YL}PIPERIDINE-1- HETNAM 6 TL7 CARBOXYLATE HETNAM ZN ZINC ION FORMUL 5 TL7 2(C58 H65 F2 N11 O8) FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *405(H2 O) HELIX 1 AA1 ASP A 398 LEU A 402 5 5 HELIX 2 AA2 SER A 438 MET A 450 1 13 HELIX 3 AA3 CYS A 481 GLU A 488 1 8 HELIX 4 AA4 MET A 489 ARG A 492 5 4 HELIX 5 AA5 GLN A 494 LYS A 515 1 22 HELIX 6 AA6 ALA A 523 ARG A 525 5 3 HELIX 7 AA7 GLY A 541 VAL A 546 5 6 HELIX 8 AA8 ASP A 548 SER A 553 1 6 HELIX 9 AA9 PRO A 560 SER A 564 5 5 HELIX 10 AB1 PRO A 565 SER A 572 1 8 HELIX 11 AB2 SER A 575 SER A 592 1 18 HELIX 12 AB3 THR A 602 GLN A 612 1 11 HELIX 13 AB4 SER A 623 CYS A 633 1 11 HELIX 14 AB5 LYS A 637 ARG A 641 5 5 HELIX 15 AB6 THR A 643 VAL A 654 1 12 HELIX 16 AB7 ASP B 398 LYS B 400 5 3 HELIX 17 AB8 SER B 438 MET B 450 1 13 HELIX 18 AB9 CYS B 481 GLU B 488 1 8 HELIX 19 AC1 MET B 489 ARG B 492 5 4 HELIX 20 AC2 GLN B 494 LYS B 515 1 22 HELIX 21 AC3 ALA B 523 ARG B 525 5 3 HELIX 22 AC4 GLY B 541 VAL B 546 5 6 HELIX 23 AC5 ASP B 548 SER B 553 1 6 HELIX 24 AC6 PRO B 560 SER B 564 5 5 HELIX 25 AC7 PRO B 565 SER B 572 1 8 HELIX 26 AC8 SER B 575 SER B 592 1 18 HELIX 27 AC9 THR B 602 GLN B 612 1 11 HELIX 28 AD1 SER B 623 CYS B 633 1 11 HELIX 29 AD2 LYS B 637 ARG B 641 5 5 HELIX 30 AD3 THR B 643 VAL B 654 1 12 HELIX 31 AD4 ASN C 263 GLN C 267 5 5 HELIX 32 AD5 THR C 268 THR C 275 1 8 HELIX 33 AD6 PHE C 276 TRP C 279 5 4 HELIX 34 AD7 GLN C 286 ALA C 293 1 8 HELIX 35 AD8 ASP C 321 PHE C 330 1 10 HELIX 36 AD9 CYS C 333 GLY C 350 1 18 HELIX 37 AE1 ASN D 263 GLN D 267 5 5 HELIX 38 AE2 THR D 268 THR D 275 1 8 HELIX 39 AE3 PHE D 276 TRP D 279 5 4 HELIX 40 AE4 GLN D 286 ALA D 293 1 8 HELIX 41 AE5 ASP D 321 PHE D 330 1 10 HELIX 42 AE6 CYS D 333 GLN D 349 1 17 SHEET 1 AA1 5 LYS A 406 GLY A 409 0 SHEET 2 AA1 5 VAL A 416 LYS A 420 -1 O TYR A 418 N LYS A 406 SHEET 3 AA1 5 ASP A 426 MET A 431 -1 O ILE A 429 N LYS A 417 SHEET 4 AA1 5 PHE A 471 GLU A 475 -1 O ILE A 472 N LYS A 430 SHEET 5 AA1 5 LEU A 460 CYS A 464 -1 N GLY A 462 O ILE A 473 SHEET 1 AA2 2 CYS A 527 VAL A 529 0 SHEET 2 AA2 2 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 SHEET 1 AA3 5 LEU B 402 GLY B 411 0 SHEET 2 AA3 5 GLY B 414 TRP B 421 -1 O GLY B 414 N GLY B 411 SHEET 3 AA3 5 TYR B 425 ILE B 432 -1 O ILE B 429 N LYS B 417 SHEET 4 AA3 5 ILE B 470 GLU B 475 -1 O THR B 474 N ALA B 428 SHEET 5 AA3 5 LEU B 460 CYS B 464 -1 N GLY B 462 O ILE B 473 SHEET 1 AA4 2 CYS B 527 VAL B 529 0 SHEET 2 AA4 2 VAL B 535 VAL B 537 -1 O LYS B 536 N LEU B 528 SHEET 1 AA5 3 PHE C 295 TYR C 297 0 SHEET 2 AA5 3 VAL C 304 CYS C 306 -1 O LYS C 305 N TYR C 296 SHEET 3 AA5 3 GLY C 312 LEU C 313 -1 O LEU C 313 N VAL C 304 SHEET 1 AA6 3 PHE D 295 TYR D 297 0 SHEET 2 AA6 3 VAL D 304 CYS D 306 -1 O LYS D 305 N TYR D 296 SHEET 3 AA6 3 GLY D 312 LEU D 313 -1 O LEU D 313 N VAL D 304 LINK SG CYS C 306 ZN ZN C 401 1555 1555 2.18 LINK SG CYS C 309 ZN ZN C 401 1555 1555 2.42 LINK NE2 HIS C 326 ZN ZN C 401 1555 1555 2.12 LINK SG CYS C 333 ZN ZN C 401 1555 1555 2.23 LINK SG CYS D 306 ZN ZN D 401 1555 1555 2.23 LINK SG CYS D 309 ZN ZN D 401 1555 1555 2.34 LINK NE2 HIS D 326 ZN ZN D 401 1555 1555 2.25 LINK SG CYS D 333 ZN ZN D 401 1555 1555 2.27 CISPEP 1 ARG A 468 PRO A 469 0 4.82 CISPEP 2 ARG B 468 PRO B 469 0 1.01 SITE 1 AC1 29 LEU A 408 VAL A 416 ALA A 428 LYS A 430 SITE 2 AC1 29 MET A 449 ILE A 472 THR A 474 GLU A 475 SITE 3 AC1 29 MET A 477 GLY A 480 CYS A 481 ASN A 484 SITE 4 AC1 29 LEU A 528 SER A 538 ASP A 539 PHE A 540 SITE 5 AC1 29 LEU A 542 ASP A 549 HOH A 875 HOH A 903 SITE 6 AC1 29 ASP C 303 GLY C 312 LEU C 313 ARG C 314 SITE 7 AC1 29 CYS C 315 ASP C 320 GLU C 325 TRP C 329 SITE 8 AC1 29 PHE C 330 SITE 1 AC2 32 LEU B 408 VAL B 416 ALA B 428 LYS B 430 SITE 2 AC2 32 MET B 449 ILE B 472 THR B 474 GLU B 475 SITE 3 AC2 32 TYR B 476 MET B 477 GLY B 480 CYS B 481 SITE 4 AC2 32 ASN B 484 LEU B 528 SER B 538 ASP B 539 SITE 5 AC2 32 PHE B 540 LEU B 542 ASP B 549 HOH B 919 SITE 6 AC2 32 ASP D 303 VAL D 304 LYS D 305 GLY D 312 SITE 7 AC2 32 LEU D 313 ARG D 314 CYS D 315 TRP D 316 SITE 8 AC2 32 GLU D 317 ASP D 320 GLU D 325 TRP D 329 SITE 1 AC3 4 CYS C 306 CYS C 309 HIS C 326 CYS C 333 SITE 1 AC4 4 CYS D 306 CYS D 309 HIS D 326 CYS D 333 CRYST1 37.980 56.330 98.120 104.98 100.89 90.13 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026330 0.000060 0.005268 0.00000 SCALE2 0.000000 0.017753 0.004852 0.00000 SCALE3 0.000000 0.000000 0.010759 0.00000