HEADER ISOMERASE 20-MAR-20 6W80 TITLE CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA K279A IN COMPLEX WITH PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSA,GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE,GSA-AT; COMPND 5 EC: 5.4.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA (STRAIN K279A); SOURCE 3 ORGANISM_TAXID: 522373; SOURCE 4 STRAIN: K279A; SOURCE 5 GENE: HEML, SMLT3873; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: STMAA.01026.C.B1 KEYWDS SSGCID, STENOTROPHOMONAS MALTOPHILIA, GLUTAMATE-1-SEMIALDEHYDE 2, 1- KEYWDS 2 AMINOMUTASE, HEML, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 6W80 1 REMARK REVDAT 1 08-APR-20 6W80 0 JRNL AUTH J.ABENDROTH,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE JRNL TITL 2 2,1-AMINOMUTASE FROM STENOTROPHOMONAS MALTOPHILIA K279A IN JRNL TITL 3 COMPLEX WITH PLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 79539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.430 REMARK 3 FREE R VALUE TEST SET COUNT : 1933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4700 - 3.3700 0.98 5990 160 0.1407 0.1774 REMARK 3 2 3.3700 - 2.6800 1.00 5769 128 0.1428 0.1755 REMARK 3 3 2.6800 - 2.3400 1.00 5634 122 0.1401 0.1741 REMARK 3 4 2.3400 - 2.1300 1.00 5581 142 0.1317 0.1840 REMARK 3 5 2.1300 - 1.9700 1.00 5547 144 0.1275 0.1829 REMARK 3 6 1.9700 - 1.8600 1.00 5527 137 0.1242 0.1745 REMARK 3 7 1.8600 - 1.7600 1.00 5467 134 0.1215 0.1995 REMARK 3 8 1.7600 - 1.6900 1.00 5509 115 0.1170 0.1818 REMARK 3 9 1.6900 - 1.6200 1.00 5453 139 0.1128 0.1875 REMARK 3 10 1.6200 - 1.5700 1.00 5478 138 0.1110 0.1732 REMARK 3 11 1.5700 - 1.5200 1.00 5433 133 0.1195 0.1794 REMARK 3 12 1.5200 - 1.4700 1.00 5395 147 0.1321 0.1950 REMARK 3 13 1.4700 - 1.4400 1.00 5398 135 0.1477 0.2339 REMARK 3 14 1.4400 - 1.4000 1.00 5425 159 0.1645 0.2160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.124 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3390 REMARK 3 ANGLE : 1.033 4631 REMARK 3 CHIRALITY : 0.089 513 REMARK 3 PLANARITY : 0.007 633 REMARK 3 DIHEDRAL : 19.802 1237 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.33 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.93 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 5I92 CHAIN A AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.4 MG/ML STMAA.01026.C.B1.PW38743 + REMARK 280 2 MM PLP + 2 MM ALANINE AGAINST MOLECULAR DIMENSIONS MORPHEUS REMARK 280 SCREEN, CONDITION G9 (10% W/V PEG20000, 20% V/V PEG550 MME, 20 REMARK 280 MM SODIUM FORMATE, 20 MM AMMONIUM ACETATE, 20 MM TRISODIUM REMARK 280 CITRATE, 20 MM SODIUM POTASSIUM L-TARTRATE, 20 MM SODIUM OXAMATE, REMARK 280 100 MM BICINE/TRIZMA BASE, PH 8.5), DIRECT CRYOPROTECTION, TRAY: REMARK 280 313929G9, PUCK JXA1-2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.81333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.40667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.61000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.20333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 306.01667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.81333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 122.40667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.20333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 183.61000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 306.01667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 832 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 951 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 965 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1114 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 GLY A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 428 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 149 O HOH A 601 2.00 REMARK 500 OD1 ASP A 198 O HOH A 602 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 196 26.48 -146.11 REMARK 500 ASN A 213 -176.99 65.36 REMARK 500 LYS A 267 -99.17 53.74 REMARK 500 LYS A 267 -98.43 52.78 REMARK 500 SER A 397 136.96 -172.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1117 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STMAA.01026.C RELATED DB: TARGETTRACK DBREF 6W80 A 1 429 UNP B2FT35 GSA_STRMK 1 429 SEQADV 6W80 MET A -7 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 ALA A -6 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A -5 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A -4 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A -3 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A -2 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A -1 UNP B2FT35 EXPRESSION TAG SEQADV 6W80 HIS A 0 UNP B2FT35 EXPRESSION TAG SEQRES 1 A 437 MET ALA HIS HIS HIS HIS HIS HIS MET ASN HIS ASP GLN SEQRES 2 A 437 SER HIS ALA LEU PHE SER ARG ALA GLN GLN LEU LEU PRO SEQRES 3 A 437 GLY GLY VAL ASN SER PRO VAL ARG ALA PHE LYS SER VAL SEQRES 4 A 437 GLY GLY GLU PRO PHE PHE VAL GLU ARG ALA ASP GLY ALA SEQRES 5 A 437 TYR LEU TYR ASP VAL ASP GLY ASN ARG TYR ILE ASP TYR SEQRES 6 A 437 VAL GLY SER TRP GLY PRO MET ILE VAL GLY HIS ASN HIS SEQRES 7 A 437 PRO ALA VAL ARG GLN ALA VAL LYS LYS ALA ILE ASP ASN SEQRES 8 A 437 GLY LEU SER PHE GLY ALA PRO CYS ALA GLY GLU VAL THR SEQRES 9 A 437 MET ALA GLU THR ILE THR ARG LEU VAL PRO SER CYS GLU SEQRES 10 A 437 MET VAL ARG MET VAL ASN SER GLY THR GLU ALA THR LEU SEQRES 11 A 437 SER ALA ILE ARG LEU ALA ARG GLY ALA THR GLY ARG ASN SEQRES 12 A 437 ARG ILE VAL LYS PHE GLU GLY CYS TYR HIS GLY HIS GLY SEQRES 13 A 437 ASP SER PHE LEU VAL LYS ALA GLY SER GLY MET LEU THR SEQRES 14 A 437 LEU GLY VAL PRO THR SER PRO GLY VAL PRO ALA GLY LEU SEQRES 15 A 437 SER GLU LEU THR LEU THR LEU PRO TYR ASN ASP PHE GLU SEQRES 16 A 437 ALA ALA THR ALA LEU PHE GLU GLN GLN GLY ASP ASP ILE SEQRES 17 A 437 ALA GLY LEU ILE ILE GLU PRO VAL VAL GLY ASN ALA ASN SEQRES 18 A 437 CYS ILE PRO PRO ARG GLU GLY TYR LEU GLN HIS LEU ARG SEQRES 19 A 437 ALA LEU CYS THR LYS HIS GLY ALA LEU LEU ILE PHE ASP SEQRES 20 A 437 GLU VAL MET THR GLY PHE ARG VAL ALA LEU GLY GLY ALA SEQRES 21 A 437 GLN ALA HIS TYR GLY ILE THR PRO ASP LEU THR THR PHE SEQRES 22 A 437 GLY LYS ILE ILE GLY GLY GLY MET PRO VAL GLY ALA TYR SEQRES 23 A 437 GLY GLY ARG ARG GLU LEU MET GLN GLN ILE ALA PRO ALA SEQRES 24 A 437 GLY PRO ILE TYR GLN ALA GLY THR LEU SER GLY ASN PRO SEQRES 25 A 437 VAL ALA MET ALA ALA GLY LEU ALA MET LEU GLU LEU VAL SEQRES 26 A 437 GLN GLN PRO GLY PHE HIS ALA ASP LEU ALA GLU ARG THR SEQRES 27 A 437 ALA ARG LEU CYS ALA GLY LEU GLU ALA ALA ALA ALA ASP SEQRES 28 A 437 ALA GLY VAL ALA VAL THR THR THR ARG VAL GLY ALA MET SEQRES 29 A 437 PHE GLY LEU PHE PHE THR SER GLU LYS VAL GLU THR TYR SEQRES 30 A 437 ALA GLN ALA THR ALA CYS ASP ILE PRO ALA PHE ASN ARG SEQRES 31 A 437 PHE PHE HIS ALA MET LEU GLU GLN GLY VAL PHE LEU ALA SEQRES 32 A 437 PRO SER ALA TYR GLU ALA GLY PHE LEU SER SER ALA HIS SEQRES 33 A 437 ASP ASP ALA VAL ILE GLU ALA THR LEU ALA ALA ALA ARG SEQRES 34 A 437 VAL ALA PHE ARG ALA ALA LYS GLY HET PLP A 500 32 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *521(H2 O) HELIX 1 AA1 HIS A 3 LEU A 17 1 15 HELIX 2 AA2 PRO A 18 VAL A 21 5 4 HELIX 3 AA3 SER A 23 PHE A 28 5 6 HELIX 4 AA4 VAL A 58 GLY A 62 5 5 HELIX 5 AA5 HIS A 70 ASP A 82 1 13 HELIX 6 AA6 CYS A 91 VAL A 105 1 15 HELIX 7 AA7 SER A 116 GLY A 133 1 18 HELIX 8 AA8 GLY A 148 PHE A 151 5 4 HELIX 9 AA9 PRO A 171 LEU A 177 1 7 HELIX 10 AB1 ASP A 185 GLY A 197 1 13 HELIX 11 AB2 GLY A 220 GLY A 233 1 14 HELIX 12 AB3 GLY A 250 GLY A 257 1 8 HELIX 13 AB4 GLY A 266 GLY A 271 5 6 HELIX 14 AB5 ARG A 281 GLN A 286 1 6 HELIX 15 AB6 ASN A 303 GLN A 318 1 16 HELIX 16 AB7 GLY A 321 GLY A 345 1 25 HELIX 17 AB8 THR A 368 ALA A 374 1 7 HELIX 18 AB9 ASP A 376 GLN A 390 1 15 HELIX 19 AC1 ASP A 409 LYS A 428 1 20 SHEET 1 AA1 4 VAL A 38 ASP A 42 0 SHEET 2 AA1 4 TYR A 45 ASP A 48 -1 O TYR A 47 N ARG A 40 SHEET 3 AA1 4 ARG A 53 ASP A 56 -1 O TYR A 54 N LEU A 46 SHEET 4 AA1 4 VAL A 392 PHE A 393 1 O PHE A 393 N ILE A 55 SHEET 1 AA2 7 MET A 110 VAL A 114 0 SHEET 2 AA2 7 GLY A 276 GLY A 280 -1 O GLY A 276 N VAL A 114 SHEET 3 AA2 7 LEU A 262 PHE A 265 -1 N PHE A 265 O ALA A 277 SHEET 4 AA2 7 LEU A 235 ASP A 239 1 N PHE A 238 O LEU A 262 SHEET 5 AA2 7 ILE A 200 ILE A 205 1 N LEU A 203 O ILE A 237 SHEET 6 AA2 7 ARG A 136 GLU A 141 1 N ARG A 136 O ALA A 201 SHEET 7 AA2 7 THR A 178 PRO A 182 1 O LEU A 179 N ILE A 137 SHEET 1 AA3 2 VAL A 153 LYS A 154 0 SHEET 2 AA3 2 VAL A 164 PRO A 165 -1 O VAL A 164 N LYS A 154 SHEET 1 AA4 3 THR A 349 VAL A 353 0 SHEET 2 AA4 3 MET A 356 PHE A 360 -1 O PHE A 360 N THR A 349 SHEET 3 AA4 3 GLY A 402 PHE A 403 -1 O GLY A 402 N PHE A 357 CISPEP 1 ALA A 289 PRO A 290 0 7.55 SITE 1 AC1 18 SER A 116 GLY A 117 THR A 118 TYR A 144 SITE 2 AC1 18 HIS A 145 GLY A 146 ASN A 211 ASP A 239 SITE 3 AC1 18 VAL A 241 MET A 242 LYS A 267 GLY A 298 SITE 4 AC1 18 THR A 299 HOH A 607 HOH A 625 HOH A 639 SITE 5 AC1 18 HOH A 659 HOH A 724 CRYST1 60.280 60.280 367.220 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016589 0.009578 0.000000 0.00000 SCALE2 0.000000 0.019156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002723 0.00000