HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-MAR-20 6W8H TITLE H-PGDS COMPLEXED WITH INHIBITOR 1Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: H-PGDS,GST CLASS-SIGMA,GLUTATHIONE S-TRANSFERASE, COMPND 5 GLUTATHIONE-DEPENDENT PGD SYNTHASE,GLUTATHIONE-REQUIRING COMPND 6 PROSTAGLANDIN D SYNTHASE,PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 7 EC: 5.3.99.2,2.5.1.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPGDS, GSTS, PGDS, PTGDS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUTATHIONE S-TRANSFERASE, HYDROLASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.M.SHEWCHUK,P.WARD REVDAT 2 18-OCT-23 6W8H 1 REMARK REVDAT 1 04-NOV-20 6W8H 0 JRNL AUTH R.CADILLA,D.N.DEATON,Y.DO,P.A.ELKINS,D.ENNULAT,J.H.GUSS, JRNL AUTH 2 J.HOLT,M.R.JEUNE,A.G.KING,J.C.KLAPWIJK,H.F.KRAMER, JRNL AUTH 3 N.J.KRAMER,S.B.LAFFAN,P.I.MASURIA,A.V.MCDOUGAL, JRNL AUTH 4 P.N.MORTENSON,C.MUSETTI,G.E.PECKHAM,B.L.PIETRAK,C.POOLE, JRNL AUTH 5 D.J.PRICE,A.R.RENDINA,G.SATI,G.SAXTY,B.G.SHEARER, JRNL AUTH 6 L.M.SHEWCHUK,H.F.SNEDDON,E.L.STEWART,J.D.STUART,D.N.THOMAS, JRNL AUTH 7 S.A.THOMSON,P.WARD,J.W.WILSON,T.XU,M.A.YOUNGMAN JRNL TITL THE EXPLORATION OF AZA-QUINOLINES AS HEMATOPOIETIC JRNL TITL 2 PROSTAGLANDIN D SYNTHASE (H-PGDS) INHIBITORS WITH LOW BRAIN JRNL TITL 3 EXPOSURE. JRNL REF BIOORG.MED.CHEM. V. 28 15791 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 33059303 JRNL DOI 10.1016/J.BMC.2020.115791 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.5 REMARK 3 NUMBER OF REFLECTIONS : 22351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.968 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3401 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3108 ; 0.018 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4645 ; 1.408 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7176 ; 1.654 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;30.644 ;21.954 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;13.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3753 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 732 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8120 0.1460 29.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.1285 REMARK 3 T33: 0.0524 T12: -0.0114 REMARK 3 T13: -0.0229 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.8768 L22: 3.4731 REMARK 3 L33: 2.2134 L12: 0.1458 REMARK 3 L13: -0.1230 L23: -1.0405 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0567 S13: -0.1703 REMARK 3 S21: -0.1031 S22: 0.1837 S23: 0.1255 REMARK 3 S31: 0.2385 S32: -0.0614 S33: -0.1772 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 199 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6500 15.4850 12.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.2955 T22: 0.2441 REMARK 3 T33: 0.0140 T12: -0.1043 REMARK 3 T13: 0.0331 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.6423 L22: 2.8138 REMARK 3 L33: 1.3498 L12: -0.0568 REMARK 3 L13: -0.4822 L23: -0.3896 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: 0.3338 S13: 0.1074 REMARK 3 S21: -0.6872 S22: 0.1046 S23: -0.1414 REMARK 3 S31: -0.0949 S32: 0.1274 S33: -0.0205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6W8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6N4E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS(HYDROXYMETHYL)AMINOMETHANE REMARK 280 HYDROCHLORIDE PH 7.5, 50 MM SODIUM CHLORIDE, 1MM DTT, 15 MM REMARK 280 GLUTATHIONE, 1 MM MGCL2, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.59850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 MET C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 GLU C -6 REMARK 465 ASN C -5 REMARK 465 LEU C -4 REMARK 465 TYR C -3 REMARK 465 PHE C -2 REMARK 465 GLN C -1 REMARK 465 GLY C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 GLN A 28 CD OE1 NE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 MET A 115 SD CE REMARK 470 ASN A 144 CG OD1 ND2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 ARG A 193 NE CZ NH1 NH2 REMARK 470 MET C 1 CG SD CE REMARK 470 ASN C 3 CG OD1 ND2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 ASP C 38 CG OD1 OD2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 SER C 44 OG REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 GLN C 109 CG CD OE1 NE2 REMARK 470 GLU C 113 CG CD OE1 OE2 REMARK 470 GLN C 114 CG CD OE1 NE2 REMARK 470 MET C 115 CG SD CE REMARK 470 LYS C 179 CE NZ REMARK 470 LYS C 180 CE NZ REMARK 470 LYS C 192 CG CD CE NZ REMARK 470 ARG C 193 NE CZ NH1 NH2 REMARK 470 GLN C 196 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 57.67 32.66 REMARK 500 GLN A 63 108.11 73.15 REMARK 500 ARG C 12 -71.78 -65.96 REMARK 500 GLN C 63 110.35 72.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TJG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TJG C 202 DBREF 6W8H A 1 199 UNP O60760 HPGDS_HUMAN 1 199 DBREF 6W8H C 1 199 UNP O60760 HPGDS_HUMAN 1 199 SEQADV 6W8H MET A -13 UNP O60760 INITIATING METHIONINE SEQADV 6W8H HIS A -12 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS A -11 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS A -10 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS A -9 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS A -8 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS A -7 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLU A -6 UNP O60760 EXPRESSION TAG SEQADV 6W8H ASN A -5 UNP O60760 EXPRESSION TAG SEQADV 6W8H LEU A -4 UNP O60760 EXPRESSION TAG SEQADV 6W8H TYR A -3 UNP O60760 EXPRESSION TAG SEQADV 6W8H PHE A -2 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLN A -1 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLY A 0 UNP O60760 EXPRESSION TAG SEQADV 6W8H MET C -13 UNP O60760 INITIATING METHIONINE SEQADV 6W8H HIS C -12 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS C -11 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS C -10 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS C -9 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS C -8 UNP O60760 EXPRESSION TAG SEQADV 6W8H HIS C -7 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLU C -6 UNP O60760 EXPRESSION TAG SEQADV 6W8H ASN C -5 UNP O60760 EXPRESSION TAG SEQADV 6W8H LEU C -4 UNP O60760 EXPRESSION TAG SEQADV 6W8H TYR C -3 UNP O60760 EXPRESSION TAG SEQADV 6W8H PHE C -2 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLN C -1 UNP O60760 EXPRESSION TAG SEQADV 6W8H GLY C 0 UNP O60760 EXPRESSION TAG SEQRES 1 A 213 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 213 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 3 A 213 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 4 A 213 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 5 A 213 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 6 A 213 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 7 A 213 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 8 A 213 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 9 A 213 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 10 A 213 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 11 A 213 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 12 A 213 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 13 A 213 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 14 A 213 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 15 A 213 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 16 A 213 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 17 A 213 PRO GLN THR LYS LEU SEQRES 1 C 213 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 C 213 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 3 C 213 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 4 C 213 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 5 C 213 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 6 C 213 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 7 C 213 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 8 C 213 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 9 C 213 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 10 C 213 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 11 C 213 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 12 C 213 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 13 C 213 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 14 C 213 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 15 C 213 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 16 C 213 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 17 C 213 PRO GLN THR LYS LEU HET GSH A 201 20 HET EDO A 202 4 HET TJG A 203 26 HET GSH C 201 20 HET TJG C 202 26 HETNAM GSH GLUTATHIONE HETNAM EDO 1,2-ETHANEDIOL HETNAM TJG 7-CYCLOPROPYL-N-[TRANS-4-(2-HYDROXYPROPAN-2-YL) HETNAM 2 TJG CYCLOHEXYL]-1,8-NAPHTHYRIDINE-3-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 EDO C2 H6 O2 FORMUL 5 TJG 2(C21 H27 N3 O2) FORMUL 8 HOH *102(H2 O) HELIX 1 AA1 ARG A 12 ARG A 14 5 3 HELIX 2 AA2 ALA A 15 ASP A 26 1 12 HELIX 3 AA3 GLU A 35 ALA A 37 5 3 HELIX 4 AA4 ASP A 38 SER A 44 1 7 HELIX 5 AA5 GLN A 63 LYS A 73 1 11 HELIX 6 AA6 THR A 81 PHE A 102 1 22 HELIX 7 AA7 LYS A 108 TYR A 122 1 15 HELIX 8 AA8 TYR A 122 GLY A 136 1 15 HELIX 9 AA9 THR A 147 LYS A 164 1 18 HELIX 10 AB1 HIS A 171 ALA A 183 1 13 HELIX 11 AB2 ILE A 184 ARG A 194 1 11 HELIX 12 AB3 ARG C 12 ARG C 14 5 3 HELIX 13 AB4 ALA C 15 LEU C 25 1 11 HELIX 14 AB5 GLU C 35 ALA C 37 5 3 HELIX 15 AB6 ASP C 38 LEU C 46 1 9 HELIX 16 AB7 GLN C 63 LYS C 73 1 11 HELIX 17 AB8 THR C 75 GLY C 79 5 5 HELIX 18 AB9 THR C 81 CYS C 101 1 21 HELIX 19 AC1 LYS C 108 TYR C 122 1 15 HELIX 20 AC2 TYR C 122 GLY C 136 1 15 HELIX 21 AC3 THR C 147 LYS C 164 1 18 HELIX 22 AC4 HIS C 171 ALA C 183 1 13 HELIX 23 AC5 ILE C 184 ARG C 194 1 11 SHEET 1 AA1 4 GLU A 30 ILE A 34 0 SHEET 2 AA1 4 TYR A 4 PHE A 9 1 N LEU A 6 O GLU A 30 SHEET 3 AA1 4 ILE A 53 VAL A 56 -1 O GLU A 55 N LYS A 5 SHEET 4 AA1 4 LEU A 59 HIS A 62 -1 O LEU A 61 N LEU A 54 SHEET 1 AA2 4 GLU C 30 ILE C 34 0 SHEET 2 AA2 4 TYR C 4 PHE C 9 1 N LEU C 6 O GLU C 30 SHEET 3 AA2 4 ILE C 53 VAL C 56 -1 O GLU C 55 N LYS C 5 SHEET 4 AA2 4 LEU C 59 HIS C 62 -1 O LEU C 59 N VAL C 56 CISPEP 1 ILE A 51 PRO A 52 0 9.39 CISPEP 2 ILE C 51 PRO C 52 0 9.06 SITE 1 AC1 12 TYR A 8 ARG A 14 TRP A 39 LYS A 43 SITE 2 AC1 12 LYS A 50 ILE A 51 PRO A 52 GLN A 63 SITE 3 AC1 12 SER A 64 TJG A 203 HOH A 315 ASP C 97 SITE 1 AC2 2 GLN A 28 TYR A 29 SITE 1 AC3 10 PHE A 9 MET A 11 GLY A 13 ARG A 14 SITE 2 AC3 10 GLN A 36 TRP A 39 TRP A 104 TYR A 152 SITE 3 AC3 10 GSH A 201 HOH A 304 SITE 1 AC4 12 ASP A 97 TYR C 8 ARG C 14 TRP C 39 SITE 2 AC4 12 LYS C 43 LYS C 50 ILE C 51 PRO C 52 SITE 3 AC4 12 GLN C 63 SER C 64 TJG C 202 HOH C 328 SITE 1 AC5 9 PHE C 9 MET C 11 GLY C 13 ARG C 14 SITE 2 AC5 9 GLN C 36 TRP C 104 TYR C 152 GSH C 201 SITE 3 AC5 9 HOH C 318 CRYST1 48.331 67.197 69.740 90.00 96.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020691 0.000000 0.002498 0.00000 SCALE2 0.000000 0.014882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014443 0.00000