HEADER SIGNALING PROTEIN 26-MAR-20 6WBJ TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF MRECK(CC4) IN FUSION WITH TITLE 2 ENGINEERED MBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,REVERSION-INDUCING CYSTEINE- COMPND 3 RICH PROTEIN WITH KAZAL MOTIFS FUSION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MRECK; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 562, 10090; SOURCE 5 GENE: MALE, DJ492_13065, EPS91_05465, FV295_14110, NCTC8450_00456, SOURCE 6 RECK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SHUFFLE (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS WNT SIGNALING, 4-HELIX BUNDLE, EXTRACELLULAR DOMAIN, VASCULARIZATION, KEYWDS 2 BLOOD-BRAIN BARRIER, MALTOSE-BINDING PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHANG,F.L.HSIEH,S.B.GABELLI,J.NATHANS REVDAT 5 18-OCT-23 6WBJ 1 HETSYN REVDAT 4 29-JUL-20 6WBJ 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 15-JUL-20 6WBJ 1 JRNL REVDAT 2 01-JUL-20 6WBJ 1 JRNL REVDAT 1 17-JUN-20 6WBJ 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,P.M.SMALLWOOD,S.B.GABELLI,J.NATHANS JRNL TITL STRUCTURE OF THE RECK CC DOMAIN, AN EVOLUTIONARY ANOMALY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 15104 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32541044 JRNL DOI 10.1073/PNAS.2006332117 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8160 - 4.6251 1.00 2934 137 0.1743 0.1819 REMARK 3 2 4.6251 - 3.6713 1.00 2757 156 0.1339 0.1469 REMARK 3 3 3.6713 - 3.2072 1.00 2739 144 0.1494 0.1617 REMARK 3 4 3.2072 - 2.9140 1.00 2733 138 0.1570 0.1785 REMARK 3 5 2.9140 - 2.7051 1.00 2720 146 0.1486 0.1921 REMARK 3 6 2.7051 - 2.5456 1.00 2705 146 0.1371 0.1510 REMARK 3 7 2.5456 - 2.4182 1.00 2686 127 0.1385 0.1634 REMARK 3 8 2.4182 - 2.3129 1.00 2675 149 0.1356 0.1716 REMARK 3 9 2.3129 - 2.2238 1.00 2714 146 0.1415 0.1755 REMARK 3 10 2.2238 - 2.1471 1.00 2684 141 0.1401 0.1537 REMARK 3 11 2.1471 - 2.0800 1.00 2657 159 0.1523 0.2026 REMARK 3 12 2.0800 - 2.0205 1.00 2688 140 0.1552 0.1824 REMARK 3 13 2.0205 - 1.9673 1.00 2651 159 0.1551 0.1898 REMARK 3 14 1.9673 - 1.9193 1.00 2663 146 0.1554 0.1657 REMARK 3 15 1.9193 - 1.8757 1.00 2656 146 0.1637 0.1891 REMARK 3 16 1.8757 - 1.8358 1.00 2666 143 0.1708 0.2105 REMARK 3 17 1.8358 - 1.7990 1.00 2664 136 0.1737 0.2120 REMARK 3 18 1.7990 - 1.7651 1.00 2665 143 0.1948 0.2328 REMARK 3 19 1.7651 - 1.7336 1.00 2690 142 0.2139 0.2343 REMARK 3 20 1.7336 - 1.7042 1.00 2630 121 0.2329 0.2335 REMARK 3 21 1.7042 - 1.6767 1.00 2653 147 0.2510 0.2759 REMARK 3 22 1.6767 - 1.6510 0.91 2428 132 0.2720 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0221 40.9681 -18.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1408 REMARK 3 T33: 0.1876 T12: 0.0298 REMARK 3 T13: 0.0150 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.6055 L22: 0.5489 REMARK 3 L33: 0.6001 L12: 0.1301 REMARK 3 L13: -0.1151 L23: -0.2674 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.1006 S13: 0.1772 REMARK 3 S21: -0.1140 S22: -0.0650 S23: 0.1342 REMARK 3 S31: -0.0980 S32: -0.1354 S33: 0.0080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5722 22.4489 -9.8279 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1341 REMARK 3 T33: 0.0968 T12: 0.0126 REMARK 3 T13: 0.0120 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.4280 L22: 0.4689 REMARK 3 L33: 0.4167 L12: -0.1031 REMARK 3 L13: -0.1455 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0365 S13: -0.0654 REMARK 3 S21: -0.0009 S22: -0.0439 S23: -0.0489 REMARK 3 S31: 0.0175 S32: 0.0746 S33: 0.0238 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5146 14.9951 -12.3136 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.0768 REMARK 3 T33: 0.0869 T12: 0.0202 REMARK 3 T13: 0.0047 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.6221 L22: 0.7139 REMARK 3 L33: 0.8827 L12: -0.0293 REMARK 3 L13: -0.3833 L23: 0.1305 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0024 S13: -0.0690 REMARK 3 S21: -0.0050 S22: -0.0648 S23: 0.0216 REMARK 3 S31: 0.0304 S32: -0.0238 S33: 0.0040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6948 30.8533 -9.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1143 REMARK 3 T33: 0.1113 T12: 0.0053 REMARK 3 T13: 0.0146 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.6626 L22: 0.3386 REMARK 3 L33: 0.2776 L12: 0.1454 REMARK 3 L13: -0.1310 L23: 0.0448 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.0633 S13: 0.0489 REMARK 3 S21: 0.0175 S22: -0.0465 S23: -0.0638 REMARK 3 S31: -0.0341 S32: 0.0863 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7556 20.8192 -31.8588 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.2266 REMARK 3 T33: 0.1444 T12: 0.0053 REMARK 3 T13: -0.0199 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.1132 REMARK 3 L33: 0.0525 L12: -0.0490 REMARK 3 L13: -0.2056 L23: -0.1527 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: 0.1277 S13: 0.0110 REMARK 3 S21: -0.2971 S22: 0.0770 S23: 0.1441 REMARK 3 S31: 0.1036 S32: 0.0522 S33: 0.0537 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 390 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3109 40.3196 -47.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.2486 REMARK 3 T33: 0.1542 T12: -0.0087 REMARK 3 T13: 0.0151 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.1998 L22: 0.2489 REMARK 3 L33: 0.2935 L12: -0.0986 REMARK 3 L13: 0.1829 L23: -0.1731 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.2052 S13: 0.0609 REMARK 3 S21: 0.0781 S22: -0.0795 S23: -0.0180 REMARK 3 S31: -0.0753 S32: -0.0585 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5360 30.8359 -46.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.9661 T22: 0.9421 REMARK 3 T33: 0.8611 T12: 0.0055 REMARK 3 T13: -0.0788 T23: -0.1717 REMARK 3 L TENSOR REMARK 3 L11: 2.3705 L22: 2.5449 REMARK 3 L33: 2.3777 L12: 1.5863 REMARK 3 L13: -0.4711 L23: 1.5041 REMARK 3 S TENSOR REMARK 3 S11: -0.4032 S12: -1.9056 S13: 2.7577 REMARK 3 S21: 3.5850 S22: 0.3836 S23: -4.3829 REMARK 3 S31: -0.2329 S32: 2.6508 S33: 0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 64.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.80 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22070 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3SET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, 25% PEG 4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.20200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.11050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.20200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.11050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 436 REMARK 465 SER A 437 REMARK 465 GLY A 438 REMARK 465 THR A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS A 315 O SER A 435 1556 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 433 CD GLU A 433 OE1 -0.080 REMARK 500 GLU A 433 CD GLU A 433 OE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 170 -77.57 -80.17 REMARK 500 ALA A 175 78.44 56.83 REMARK 500 LYS A 177 135.81 -173.37 REMARK 500 ASP A 211 -169.66 -123.90 REMARK 500 LYS A 258 78.43 -117.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 401 -11.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 217 NE2 REMARK 620 2 GLU A 223 OE1 121.4 REMARK 620 3 GLU A 311 OE2 45.7 75.8 REMARK 620 4 HOH A 925 O 107.1 108.8 127.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WBH RELATED DB: PDB REMARK 900 6WBH WAS LOWER RESOLUTION DATA COLLECTED AT IN-HOUSE X-RAY SOURCE DBREF1 6WBJ A 5 368 UNP A0A376KDN7_ECOLX DBREF2 6WBJ A A0A376KDN7 29 392 DBREF 6WBJ A 373 437 UNP Q9Z0J1 RECK_MOUSE 206 270 SEQADV 6WBJ MET A 1 UNP A0A376KDN INITIATING METHIONINE SEQADV 6WBJ ALA A 2 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBJ LYS A 3 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBJ THR A 4 UNP A0A376KDN EXPRESSION TAG SEQADV 6WBJ ALA A 84 UNP A0A376KDN ASP 108 ENGINEERED MUTATION SEQADV 6WBJ ALA A 85 UNP A0A376KDN LYS 109 ENGINEERED MUTATION SEQADV 6WBJ ALA A 174 UNP A0A376KDN GLU 198 ENGINEERED MUTATION SEQADV 6WBJ ALA A 175 UNP A0A376KDN ASN 199 ENGINEERED MUTATION SEQADV 6WBJ HIS A 217 UNP A0A376KDN ALA 241 ENGINEERED MUTATION SEQADV 6WBJ HIS A 221 UNP A0A376KDN LYS 245 ENGINEERED MUTATION SEQADV 6WBJ ALA A 241 UNP A0A376KDN LYS 265 ENGINEERED MUTATION SEQADV 6WBJ VAL A 314 UNP A0A376KDN ALA 338 ENGINEERED MUTATION SEQADV 6WBJ VAL A 319 UNP A0A376KDN ILE 343 ENGINEERED MUTATION SEQADV 6WBJ ALA A 364 UNP A0A376KDN LYS 388 ENGINEERED MUTATION SEQADV 6WBJ ALA A 365 UNP A0A376KDN ASP 389 ENGINEERED MUTATION SEQADV 6WBJ ASN A 369 UNP A0A376KDN LINKER SEQADV 6WBJ ALA A 370 UNP A0A376KDN LINKER SEQADV 6WBJ ALA A 371 UNP A0A376KDN LINKER SEQADV 6WBJ ALA A 372 UNP A0A376KDN LINKER SEQADV 6WBJ GLY A 438 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ THR A 439 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 440 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 441 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 442 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 443 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 444 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 445 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 446 UNP Q9Z0J1 EXPRESSION TAG SEQADV 6WBJ HIS A 447 UNP Q9Z0J1 EXPRESSION TAG SEQRES 1 A 447 MET ALA LYS THR GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 A 447 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 A 447 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 A 447 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 A 447 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 A 447 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 A 447 ALA GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU SEQRES 8 A 447 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 A 447 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 A 447 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 A 447 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 A 447 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 A 447 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 A 447 ALA PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP SEQRES 15 A 447 VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR SEQRES 16 A 447 PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA SEQRES 17 A 447 ASP THR ASP TYR SER ILE ALA GLU HIS ALA PHE ASN HIS SEQRES 18 A 447 GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SEQRES 19 A 447 SER ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR SEQRES 20 A 447 VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE SEQRES 21 A 447 VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO SEQRES 22 A 447 ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU SEQRES 23 A 447 LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS SEQRES 24 A 447 PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU SEQRES 25 A 447 LEU VAL LYS ASP PRO ARG VAL ALA ALA THR MET GLU ASN SEQRES 26 A 447 ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SEQRES 27 A 447 SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN SEQRES 28 A 447 ALA ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA SEQRES 29 A 447 ALA ALA GLN THR ASN ALA ALA ALA PRO MET ARG ASN PRO SEQRES 30 A 447 THR ASP SER LEU TYR CYS CYS ASP ARG ALA GLU ASP HIS SEQRES 31 A 447 ALA CYS GLN ASN ALA CYS LYS ARG ILE LEU MET SER LYS SEQRES 32 A 447 LYS THR GLU MET GLU ILE VAL ASP GLY LEU ILE GLU GLY SEQRES 33 A 447 CYS LYS THR GLN PRO LEU PRO GLN ASP PRO LEU TRP GLN SEQRES 34 A 447 CYS PHE LEU GLU SER SER GLN SER GLY THR HIS HIS HIS SEQRES 35 A 447 HIS HIS HIS HIS HIS HET GLC B 1 22 HET GLC B 2 22 HET SO4 A 502 5 HET ZN A 503 1 HET ZN A 504 1 HET GOL A 505 14 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 SO4 O4 S 2- FORMUL 4 ZN 2(ZN 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *504(H2 O) HELIX 1 AA1 GLY A 18 GLY A 34 1 17 HELIX 2 AA2 LYS A 44 ALA A 53 1 10 HELIX 3 AA3 ARG A 68 SER A 75 1 8 HELIX 4 AA4 ALA A 84 ASP A 89 1 6 HELIX 5 AA5 TYR A 92 VAL A 99 1 8 HELIX 6 AA6 THR A 130 GLU A 132 5 3 HELIX 7 AA7 GLU A 133 ALA A 143 1 11 HELIX 8 AA8 GLU A 155 PHE A 158 5 4 HELIX 9 AA9 THR A 159 ASP A 166 1 8 HELIX 10 AB1 ASN A 187 ASN A 203 1 17 HELIX 11 AB2 ASP A 211 HIS A 221 1 11 HELIX 12 AB3 GLY A 230 TRP A 232 5 3 HELIX 13 AB4 ALA A 233 SER A 240 1 8 HELIX 14 AB5 ASN A 274 TYR A 285 1 12 HELIX 15 AB6 THR A 288 LYS A 299 1 12 HELIX 16 AB7 LEU A 306 VAL A 314 1 9 HELIX 17 AB8 ASP A 316 GLY A 329 1 14 HELIX 18 AB9 GLN A 337 SER A 354 1 18 HELIX 19 AC1 THR A 358 ALA A 372 1 15 HELIX 20 AC2 ASN A 376 ASP A 379 5 4 HELIX 21 AC3 SER A 380 ASP A 385 1 6 HELIX 22 AC4 ASP A 389 MET A 401 1 13 HELIX 23 AC5 THR A 405 LYS A 418 1 14 HELIX 24 AC6 PRO A 421 GLN A 424 5 4 HELIX 25 AC7 ASP A 425 SER A 435 1 11 SHEET 1 AA1 6 LYS A 36 GLU A 40 0 SHEET 2 AA1 6 LYS A 8 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA1 6 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA1 6 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA1 6 TYR A 108 GLU A 113 -1 N GLU A 113 O GLY A 262 SHEET 6 AA1 6 ALA A 303 VAL A 304 -1 O ALA A 303 N VAL A 112 SHEET 1 AA2 5 LYS A 36 GLU A 40 0 SHEET 2 AA2 5 LYS A 8 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA2 5 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA2 5 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA2 5 GLU A 330 ILE A 331 1 O GLU A 330 N VAL A 261 SHEET 1 AA3 2 ARG A 100 TYR A 101 0 SHEET 2 AA3 2 LYS A 104 LEU A 105 -1 O LYS A 104 N TYR A 101 SHEET 1 AA4 4 SER A 147 LEU A 149 0 SHEET 2 AA4 4 THR A 224 ASN A 229 1 O ALA A 225 N SER A 147 SHEET 3 AA4 4 SER A 116 ASN A 120 -1 N ILE A 118 O THR A 227 SHEET 4 AA4 4 TYR A 244 THR A 247 -1 O THR A 247 N LEU A 117 SHEET 1 AA5 2 TYR A 169 TYR A 173 0 SHEET 2 AA5 2 TYR A 178 GLY A 184 -1 O ASP A 179 N LYS A 172 SSBOND 1 CYS A 383 CYS A 430 1555 1555 2.08 SSBOND 2 CYS A 384 CYS A 396 1555 1555 2.08 SSBOND 3 CYS A 392 CYS A 417 1555 1555 2.11 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 LINK NE2 HIS A 217 ZN ZN A 503 1555 1555 2.01 LINK OE1 GLU A 223 ZN ZN A 503 1555 1555 1.94 LINK OE2 GLU A 311 ZN ZN A 503 1555 4555 2.07 LINK ZN ZN A 503 O HOH A 925 1555 4455 1.86 CRYST1 80.404 110.221 57.816 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017296 0.00000