HEADER LIGASE 26-MAR-20 6WBO TITLE DNA-LIGASE FROM THERMOCOCCUS GAMMATOLERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP/NAD(+)]; COMPND 5 EC: 6.5.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GAMMATOLERANS; SOURCE 3 ORGANISM_TAXID: 187878; SOURCE 4 GENE: LIG, TGAM_1718; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DNA-LIGASE, THERMOCOCCUS GAMMATOLERANS, EXTREMOPHILE, DNA-BINDING KEYWDS 2 PROTEIN, AMP, DNA BINDING PROTEIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FLORES-HERNANDEZ,C.CARDONA-FELIX,R.MIRANDA-BLANCAS,E.RUDINO-PINERA REVDAT 2 18-OCT-23 6WBO 1 REMARK REVDAT 1 05-MAY-21 6WBO 0 JRNL AUTH E.RUDINO-PINERA,E.FLORES-HERNANDEZ,C.CARDONA-FELIX JRNL TITL NEW STRUCTURAL DNA-LIGASE FROM THERMOCOCCUS GAMMATOLERANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 23671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3200 - 5.2963 0.98 3131 118 0.1882 0.2102 REMARK 3 2 5.2963 - 4.2054 0.99 3010 108 0.1650 0.1544 REMARK 3 3 4.2054 - 3.6743 0.90 2682 138 0.2197 0.2082 REMARK 3 4 3.6743 - 3.3385 0.91 2645 182 0.2572 0.2376 REMARK 3 5 3.3385 - 3.0993 0.99 2893 166 0.2764 0.2576 REMARK 3 6 3.0993 - 2.9167 1.00 2930 146 0.3040 0.2977 REMARK 3 7 2.9167 - 2.7706 0.98 2880 149 0.3107 0.3281 REMARK 3 8 2.7706 - 2.6501 0.81 2356 137 0.3311 0.3589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.034 4540 REMARK 3 ANGLE : 2.074 6103 REMARK 3 CHIRALITY : 0.180 678 REMARK 3 PLANARITY : 0.010 780 REMARK 3 DIHEDRAL : 26.165 1774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14796 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23996 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 39.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (W/V) PEG 8000, 100 MM POTASSIUM REMARK 280 PHOSPHATE MONOBASIC/ SODIUM PHOSPHATE DIBASIC PH 6.2, 150 MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 261 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 377 O HOH A 701 1.56 REMARK 500 OG1 THR A 175 O HOH A 702 1.68 REMARK 500 NH2 ARG A 112 O ALA A 157 1.73 REMARK 500 O PHE A 118 N GLN A 120 1.73 REMARK 500 OE1 GLU A 421 CE LYS A 428 1.78 REMARK 500 OH TYR A 54 O HOH A 703 1.81 REMARK 500 OD2 ASP A 440 NH1 ARG A 542 1.91 REMARK 500 OD1 ASP A 46 NZ LYS A 215 1.93 REMARK 500 O GLN A 228 O HOH A 704 1.97 REMARK 500 O PHE A 118 CG GLN A 120 1.99 REMARK 500 NZ LYS A 401 O HOH A 705 2.00 REMARK 500 O HOH A 761 O HOH A 845 2.01 REMARK 500 O PRO A 474 OG SER A 529 2.04 REMARK 500 OG1 THR A 390 OE2 GLU A 395 2.06 REMARK 500 OE2 GLU A 92 O HOH A 706 2.06 REMARK 500 O GLU A 68 O HOH A 707 2.12 REMARK 500 OG SER A 226 O HOH A 708 2.13 REMARK 500 O HOH A 823 O HOH A 852 2.15 REMARK 500 O HOH A 798 O HOH A 841 2.16 REMARK 500 O HOH A 756 O HOH A 804 2.17 REMARK 500 O VAL A 225 O HOH A 709 2.17 REMARK 500 OD1 ASP A 440 NH1 ARG A 542 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 337 OE2 GLU A 450 2575 1.17 REMARK 500 CD GLU A 337 OE2 GLU A 450 2575 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 LYS A 115 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 116 168.10 8.12 REMARK 500 PHE A 117 37.82 81.25 REMARK 500 PHE A 118 4.69 154.22 REMARK 500 SER A 119 -36.44 -17.43 REMARK 500 GLN A 120 70.10 34.17 REMARK 500 LEU A 122 103.70 104.38 REMARK 500 GLU A 140 -62.31 -94.45 REMARK 500 ALA A 178 -151.97 -124.51 REMARK 500 SER A 226 -77.06 -87.73 REMARK 500 ILE A 227 125.26 154.24 REMARK 500 LEU A 282 30.69 73.60 REMARK 500 GLU A 437 69.22 65.76 REMARK 500 ALA A 446 -175.92 -173.02 REMARK 500 LYS A 511 -52.11 -131.16 REMARK 500 VAL A 539 -75.57 -101.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 874 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 876 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 878 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 602 DBREF 6WBO A 12 565 UNP C5A7K8 C5A7K8_THEGJ 1 554 SEQADV 6WBO HIS A 11 UNP C5A7K8 EXPRESSION TAG SEQADV 6WBO ASN A 544 UNP C5A7K8 ASP 533 CONFLICT SEQRES 1 A 555 HIS MET ARG TYR SER GLU LEU ALA GLU LEU TYR ARG ARG SEQRES 2 A 555 LEU GLU LYS THR THR LEU LYS THR LEU LYS THR LYS PHE SEQRES 3 A 555 VAL ALA ASP PHE LEU LYS LYS THR PRO ASP ASP LEU LEU SEQRES 4 A 555 GLU ILE VAL PRO TYR LEU ILE LEU GLY LYS VAL PHE PRO SEQRES 5 A 555 ASP TRP ASP GLU ARG GLU LEU GLY VAL GLY GLU LYS LEU SEQRES 6 A 555 LEU ILE LYS ALA VAL SER MET ALA THR GLY VAL PRO GLU SEQRES 7 A 555 LYS GLU ILE GLU ASN SER ILE LYS ASP THR GLY ASP LEU SEQRES 8 A 555 GLY GLU SER VAL ALA LEU ALA LEU LYS LYS ARG ARG GLN SEQRES 9 A 555 LYS SER PHE PHE SER GLN PRO LEU THR ILE LYS ARG VAL SEQRES 10 A 555 TYR ASN THR PHE VAL LYS VAL ALA GLU ALA SER GLY GLU SEQRES 11 A 555 GLY SER GLN ASP ARG LYS MET LYS TYR LEU ALA ASN LEU SEQRES 12 A 555 PHE MET ASP ALA GLY PRO GLU GLU GLY LYS TYR ILE ALA SEQRES 13 A 555 ARG THR VAL LEU GLY THR MET ARG THR GLY VAL ALA GLU SEQRES 14 A 555 GLY ILE LEU ARG ASP ALA ILE ALA GLU ALA PHE LYS VAL SEQRES 15 A 555 LYS VAL GLU LEU VAL GLU ARG ALA TYR MET LEU THR SER SEQRES 16 A 555 ASP PHE GLY TYR VAL ALA LYS ILE ALA LYS LEU GLU GLY SEQRES 17 A 555 ASN GLU GLY LEU SER LYS VAL SER ILE GLN ILE GLY LYS SEQRES 18 A 555 PRO ILE ARG PRO MET LEU ALA GLN ASN ALA ALA SER VAL SEQRES 19 A 555 LYS ASP ALA LEU ILE GLU MET GLY GLY GLU ALA ALA PHE SEQRES 20 A 555 GLU ILE LYS TYR ASP GLY ALA ARG VAL GLN VAL HIS ARG SEQRES 21 A 555 ASP GLY ASP LYS VAL ILE ILE TYR SER ARG ARG LEU GLU SEQRES 22 A 555 ASN VAL THR ARG SER ILE PRO GLU ILE VAL GLU ALA VAL SEQRES 23 A 555 LYS ALA SER LEU LYS PRO SER LYS VAL ILE VAL GLU GLY SEQRES 24 A 555 GLU LEU VAL ALA VAL GLY GLU ASN GLY ARG PRO ARG PRO SEQRES 25 A 555 PHE GLN TYR VAL LEU ARG ARG PHE ARG ARG LYS TYR ASN SEQRES 26 A 555 ILE GLU GLU MET ILE GLU LYS ILE PRO LEU GLU LEU ASN SEQRES 27 A 555 LEU PHE ASP ILE LEU TYR VAL ASN GLY GLU SER LEU ILE SEQRES 28 A 555 ASP THR LYS PHE THR GLU ARG ARG LYS ARG LEU GLU GLU SEQRES 29 A 555 SER VAL GLU GLU SER ASP LYS ILE LYS LEU ALA GLU GLN SEQRES 30 A 555 LEU VAL THR LYS LYS VAL ASP GLU ALA GLU GLU PHE TYR SEQRES 31 A 555 LYS ARG ALA LEU GLU LEU GLY HIS GLU GLY LEU MET ALA SEQRES 32 A 555 LYS ARG LEU ASP ALA ILE TYR GLU PRO GLY ASN ARG GLY SEQRES 33 A 555 LYS LYS TRP LEU LYS ILE LYS PRO THR MET GLU ASN LEU SEQRES 34 A 555 ASP LEU VAL ILE ILE GLY ALA GLU TRP GLY GLU GLY ARG SEQRES 35 A 555 ARG ALA HIS LEU LEU GLY SER PHE LEU VAL GLY ALA TYR SEQRES 36 A 555 ASP PRO GLU SER GLY GLU PHE VAL PRO VAL GLY LYS VAL SEQRES 37 A 555 GLY SER GLY PHE THR ASP GLU ASP LEU VAL GLU PHE THR SEQRES 38 A 555 LYS MET LEU LYS PRO LEU ILE ILE ARG GLU GLU GLY LYS SEQRES 39 A 555 PHE VAL GLU ILE GLU PRO LYS VAL VAL ILE GLU VAL THR SEQRES 40 A 555 TYR GLN GLU ILE GLN LYS SER PRO LYS TYR LYS SER GLY SEQRES 41 A 555 PHE ALA LEU ARG PHE PRO ARG TYR VAL ALA LEU ARG GLU SEQRES 42 A 555 ASN LYS SER PRO GLU GLU ALA ASP THR ILE GLU ARG VAL SEQRES 43 A 555 ALA GLN LEU TYR GLU LEU GLN GLU ARG HET PO4 A 601 5 HET AMP A 602 22 HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 PO4 O4 P 3- FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 HOH *179(H2 O) HELIX 1 AA1 TYR A 14 THR A 27 1 14 HELIX 2 AA2 LEU A 29 LYS A 43 1 15 HELIX 3 AA3 THR A 44 LEU A 49 5 6 HELIX 4 AA4 ILE A 51 LEU A 57 1 7 HELIX 5 AA5 GLY A 72 GLY A 85 1 14 HELIX 6 AA6 PRO A 87 GLY A 99 1 13 HELIX 7 AA7 ASP A 100 LYS A 110 1 11 HELIX 8 AA8 THR A 123 GLU A 136 1 14 HELIX 9 AA9 GLY A 141 ASP A 156 1 16 HELIX 10 AB1 GLY A 158 GLY A 171 1 14 HELIX 11 AB2 ALA A 178 LYS A 191 1 14 HELIX 12 AB3 LYS A 193 SER A 205 1 13 HELIX 13 AB4 ASP A 206 LYS A 224 1 19 HELIX 14 AB5 SER A 243 MET A 251 1 9 HELIX 15 AB6 ILE A 289 ALA A 298 1 10 HELIX 16 AB7 GLY A 315 ARG A 319 5 5 HELIX 17 AB8 PHE A 323 ARG A 332 1 10 HELIX 18 AB9 ASN A 335 ILE A 343 1 9 HELIX 19 AC1 LYS A 364 VAL A 376 1 13 HELIX 20 AC2 LYS A 392 GLY A 407 1 16 HELIX 21 AC3 GLU A 450 HIS A 455 5 6 HELIX 22 AC4 THR A 483 LYS A 495 1 13 HELIX 23 AC5 SER A 546 ALA A 550 5 5 HELIX 24 AC6 THR A 552 GLN A 563 1 12 SHEET 1 AA1 5 LEU A 237 ALA A 241 0 SHEET 2 AA1 5 ARG A 425 ILE A 432 1 O LYS A 431 N GLN A 239 SHEET 3 AA1 5 GLY A 410 LYS A 414 -1 N ALA A 413 O LEU A 430 SHEET 4 AA1 5 ALA A 255 LYS A 260 -1 N GLU A 258 O MET A 412 SHEET 5 AA1 5 GLN A 387 THR A 390 -1 O LEU A 388 N PHE A 257 SHEET 1 AA2 5 LYS A 274 TYR A 278 0 SHEET 2 AA2 5 ALA A 264 ASP A 271 -1 N ASP A 271 O LYS A 274 SHEET 3 AA2 5 LYS A 304 ALA A 313 -1 O LEU A 311 N ALA A 264 SHEET 4 AA2 5 LEU A 345 VAL A 355 -1 O GLU A 346 N VAL A 312 SHEET 5 AA2 5 GLU A 358 SER A 359 -1 O GLU A 358 N VAL A 355 SHEET 1 AA3 5 LYS A 274 TYR A 278 0 SHEET 2 AA3 5 ALA A 264 ASP A 271 -1 N ASP A 271 O LYS A 274 SHEET 3 AA3 5 LYS A 304 ALA A 313 -1 O LEU A 311 N ALA A 264 SHEET 4 AA3 5 LEU A 345 VAL A 355 -1 O GLU A 346 N VAL A 312 SHEET 5 AA3 5 ILE A 382 LEU A 384 1 O LYS A 383 N LEU A 349 SHEET 1 AA4 5 PHE A 472 VAL A 478 0 SHEET 2 AA4 5 LEU A 457 TYR A 465 -1 N PHE A 460 O VAL A 478 SHEET 3 AA4 5 LEU A 439 TRP A 448 -1 N ILE A 444 O LEU A 461 SHEET 4 AA4 5 PHE A 505 ILE A 508 -1 O VAL A 506 N ALA A 446 SHEET 5 AA4 5 ILE A 498 GLU A 502 -1 N GLU A 502 O PHE A 505 SHEET 1 AA5 5 PHE A 472 VAL A 478 0 SHEET 2 AA5 5 LEU A 457 TYR A 465 -1 N PHE A 460 O VAL A 478 SHEET 3 AA5 5 LEU A 439 TRP A 448 -1 N ILE A 444 O LEU A 461 SHEET 4 AA5 5 VAL A 513 THR A 517 -1 O ILE A 514 N LEU A 441 SHEET 5 AA5 5 ARG A 537 LEU A 541 -1 O ALA A 540 N GLU A 515 SHEET 1 AA6 2 GLU A 520 LYS A 523 0 SHEET 2 AA6 2 PHE A 531 ARG A 534 -1 O ARG A 534 N GLU A 520 LINK NZ LYS A 260 P AMP A 602 1555 1555 1.44 SITE 1 AC1 7 LEU A 237 ARG A 280 ARG A 425 LYS A 431 SITE 2 AC1 7 AMP A 602 HOH A 735 HOH A 761 SITE 1 AC2 13 GLU A 258 ILE A 259 LYS A 260 TYR A 261 SITE 2 AC2 13 ARG A 265 GLU A 310 PHE A 350 MET A 412 SITE 3 AC2 13 LYS A 414 TRP A 429 LYS A 431 LYS A 433 SITE 4 AC2 13 PO4 A 601 CRYST1 91.670 92.750 98.610 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010141 0.00000