HEADER VIRAL PROTEIN/INHIBITOR 30-MAR-20 6WCO TITLE STRUCTURE OF SARS MAIN PROTEASE BOUND TO INHIBITOR X47 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAIN PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS URBANI; SOURCE 3 ORGANISM_TAXID: 228330; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COVID-19, SARS, SARS-COV, MAIN PROTEASE, 3C-LIKE PROTEASE, 3CL KEYWDS 2 PROTEASE, 3CLPRO, MPRO, BROAD-SPECTRUM, INHIBITOR, PROTEINASE, NON- KEYWDS 3 COVALENT, REVERSIBLE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS OF INFECTIOUS DISEASES, CSGID, ANTIVIRAL PROTEIN, VIRAL KEYWDS 5 PROTEIN, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.D.MESECAR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 2 (CSGID) REVDAT 2 18-OCT-23 6WCO 1 REMARK REVDAT 1 05-AUG-20 6WCO 0 JRNL AUTH A.D.MESECAR JRNL TITL A TAXONOMICALLY-DRIVEN APPROACH TO DEVELOPMENT OF POTENT, JRNL TITL 2 BROAD-SPECTRUM INHIBITORS OF CORONAVIRUS MAIN PROTEASE JRNL TITL 3 INCLUDING SARS-COV-2 (COVID-19) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 75825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9600 - 3.5600 0.96 5171 140 0.1369 0.1654 REMARK 3 2 3.5600 - 2.8200 1.00 5338 145 0.1539 0.1843 REMARK 3 3 2.8200 - 2.4700 1.00 5342 145 0.1748 0.1864 REMARK 3 4 2.4700 - 2.2400 1.00 5303 143 0.1773 0.2101 REMARK 3 5 2.2400 - 2.0800 1.00 5334 144 0.1738 0.2132 REMARK 3 6 2.0800 - 1.9600 1.00 5299 142 0.1840 0.2237 REMARK 3 7 1.9600 - 1.8600 1.00 5299 144 0.1874 0.2051 REMARK 3 8 1.8600 - 1.7800 1.00 5297 144 0.1952 0.2065 REMARK 3 9 1.7800 - 1.7100 1.00 5322 144 0.1947 0.2030 REMARK 3 10 1.7100 - 1.6500 1.00 5302 144 0.2090 0.2211 REMARK 3 11 1.6500 - 1.6000 1.00 5295 143 0.2206 0.2270 REMARK 3 12 1.6000 - 1.5500 1.00 5279 143 0.2391 0.2309 REMARK 3 13 1.5500 - 1.5100 1.00 5285 144 0.2574 0.2600 REMARK 3 14 1.5100 - 1.4800 0.94 4960 134 0.2881 0.3275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2685 REMARK 3 ANGLE : 0.909 3690 REMARK 3 CHIRALITY : 0.081 413 REMARK 3 PLANARITY : 0.005 477 REMARK 3 DIHEDRAL : 18.127 1022 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3458 -37.2586 21.0737 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1078 REMARK 3 T33: 0.2582 T12: 0.0322 REMARK 3 T13: 0.0076 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.5531 L22: 0.8169 REMARK 3 L33: 2.1173 L12: -0.3052 REMARK 3 L13: -0.5173 L23: -0.1619 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.1100 S13: -0.2811 REMARK 3 S21: 0.0281 S22: -0.0799 S23: -0.0314 REMARK 3 S31: 0.1335 S32: 0.1174 S33: 0.0628 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1466 -39.2149 18.2921 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.3200 REMARK 3 T33: 0.3257 T12: 0.0896 REMARK 3 T13: -0.0035 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 5.2385 L22: 6.7706 REMARK 3 L33: 4.1457 L12: 2.2932 REMARK 3 L13: -3.6526 L23: -4.0541 REMARK 3 S TENSOR REMARK 3 S11: 0.2483 S12: -0.3423 S13: 0.0473 REMARK 3 S21: 0.2903 S22: -0.3168 S23: -0.3091 REMARK 3 S31: -0.1960 S32: 0.3606 S33: 0.0590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0038 -46.9235 16.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.1913 REMARK 3 T33: 0.4085 T12: 0.0841 REMARK 3 T13: 0.0155 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.8516 L22: 4.1113 REMARK 3 L33: 1.0792 L12: 0.3052 REMARK 3 L13: -1.5276 L23: -0.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.1336 S12: -0.0165 S13: -0.7809 REMARK 3 S21: -0.0630 S22: -0.1542 S23: -0.1646 REMARK 3 S31: 0.3924 S32: 0.2540 S33: 0.2197 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4783 -29.2413 17.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1307 REMARK 3 T33: 0.1746 T12: 0.0310 REMARK 3 T13: -0.0059 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.9814 L22: 5.0099 REMARK 3 L33: 3.0187 L12: -0.3532 REMARK 3 L13: -1.3442 L23: -2.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0396 S13: -0.2224 REMARK 3 S21: 0.1065 S22: -0.0665 S23: 0.0319 REMARK 3 S31: -0.0040 S32: 0.1411 S33: 0.0407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7396 -29.1280 15.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1922 REMARK 3 T33: 0.1920 T12: 0.0630 REMARK 3 T13: 0.0008 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 5.7692 L22: 7.0472 REMARK 3 L33: 2.4519 L12: 2.2955 REMARK 3 L13: -0.9913 L23: -1.7747 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: -0.1736 S13: 0.0891 REMARK 3 S21: 0.0861 S22: -0.2328 S23: -0.3140 REMARK 3 S31: -0.1979 S32: 0.2378 S33: 0.1361 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4038 -10.7034 8.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.1856 REMARK 3 T33: 0.1397 T12: 0.0596 REMARK 3 T13: 0.0127 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.6710 L22: 1.8753 REMARK 3 L33: 1.2890 L12: -0.9778 REMARK 3 L13: -0.7406 L23: -0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 0.2641 S13: 0.3020 REMARK 3 S21: -0.0938 S22: -0.0752 S23: -0.0356 REMARK 3 S31: -0.2360 S32: -0.2083 S33: -0.0397 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8087 -14.3539 18.0551 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.2072 REMARK 3 T33: 0.1377 T12: 0.0637 REMARK 3 T13: 0.0062 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 4.5928 L22: 5.2377 REMARK 3 L33: 3.6940 L12: 1.1026 REMARK 3 L13: -0.2518 L23: 2.1940 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: -0.0720 S13: -0.0248 REMARK 3 S21: 0.1860 S22: -0.2342 S23: 0.4686 REMARK 3 S31: -0.0606 S32: -0.3149 S33: 0.1050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6W79 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE SARS-3CLPRO:47 A INHIBITOR COMPLEX REMARK 280 WERE CO-CRYSTALLIZED USING THE HANGING-DROP, VAPOR-DIFFUSION REMARK 280 METHOD BY SETTING UP 3 UL DROPS THAT WERE FORMED BY ADDING 1 UL REMARK 280 OF PURIFIED SARS-3CLPRO (10 MG/ML) THAT HAD BEEN INCUBATED FOR REMARK 280 THREE HOURS WITH A 3 MOLAR EXCESS OF THE OF COMPOUND 47, AND 2 REMARK 280 UL OF RESERVOIR SOLUTION: 3 MM DTT, 50 MM MES PH 6.0, 40 MM KCL, REMARK 280 1% MPD, AND 5% PEG-10K. PROTEIN CRYSTALLIZATION PLATES WERE SET REMARK 280 UP AT 4 C AND PROTEIN CRYSTALS APPEARED 24 HOURS AFTER SETTING REMARK 280 UP CRYSTALLIZATION PLATES. CRYSTALS WERE HARVESTED WITH A NYLON REMARK 280 LOOP AND THEN QUICKLY SWIPED THROUGH THE SAME MOTHER-LIQUOR REMARK 280 SOLUTION SUPPLEMENTED WITH 15% MPD., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.38150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.94800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.38150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.94800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 12.85260 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -52.11041 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 824 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 956 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 290 O HOH A 501 1.90 REMARK 500 O HOH A 542 O HOH A 711 1.94 REMARK 500 O HOH A 815 O HOH A 863 2.01 REMARK 500 OE1 GLU A 290 O HOH A 502 2.01 REMARK 500 O HOH A 528 O HOH A 812 2.02 REMARK 500 O HOH A 507 O HOH A 782 2.03 REMARK 500 O HOH A 829 O HOH A 909 2.05 REMARK 500 O HOH A 537 O HOH A 870 2.06 REMARK 500 O HOH A 877 O HOH A 879 2.11 REMARK 500 O HOH A 777 O HOH A 791 2.12 REMARK 500 OE1 GLU A 270 O HOH A 503 2.12 REMARK 500 NE2 GLN A 110 O HOH A 504 2.18 REMARK 500 O HOH A 825 O HOH A 1001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 548 3455 1.71 REMARK 500 O HOH A 517 O HOH A 812 2556 1.97 REMARK 500 O HOH A 519 O HOH A 535 3545 2.03 REMARK 500 O HOH A 521 O HOH A 691 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -126.35 53.02 REMARK 500 GLU A 47 4.38 -68.17 REMARK 500 ASP A 48 71.82 -153.09 REMARK 500 ASN A 51 57.18 -151.58 REMARK 500 ASN A 84 -123.49 51.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1014 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1018 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 8.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X47 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6W79 RELATED DB: PDB DBREF1 6WCO A 1 306 UNP A0A3G5BIY8_CVHSA DBREF2 6WCO A A0A3G5BIY8 3241 3546 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP THR VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR ALA GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS SER SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS LEU LEU ARG LEU LYS VAL SEQRES 8 A 306 ASP THR SER ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN HIS THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY LYS PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR LEU ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA ALA LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER THR ILE SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN HET MES A 401 25 HET MES A 402 25 HET X47 A 403 63 HET DMS A 404 10 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM X47 N-(4-TERT-BUTYLPHENYL)-N-[(1R)-2-(CYCLOPENTYLAMINO)-2- HETNAM 2 X47 OXO-1-(PYRIDIN-3-YL)ETHYL]-1H-IMIDAZOLE-4-CARBOXAMIDE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 MES 2(C6 H13 N O4 S) FORMUL 4 X47 C26 H31 N5 O2 FORMUL 5 DMS C2 H6 O S FORMUL 6 HOH *522(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 THR A 45 MET A 49 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 LYS A 61 HIS A 64 5 4 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 CYS A 300 1 9 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 THR A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 LEU A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 LINK NH1BARG A 222 O2S MES A 402 1555 3455 1.30 SITE 1 AC1 8 ARG A 105 HIS A 134 PHE A 181 TYR A 182 SITE 2 AC1 8 GLY A 183 HOH A 651 HOH A 688 HOH A 858 SITE 1 AC2 9 ASN A 53 ASP A 56 ARG A 60 ARG A 222 SITE 2 AC2 9 PHE A 223 ASN A 274 HOH A 519 HOH A 548 SITE 3 AC2 9 HOH A 549 SITE 1 AC3 14 MET A 49 PHE A 140 LEU A 141 ASN A 142 SITE 2 AC3 14 GLY A 143 SER A 144 CYS A 145 HIS A 163 SITE 3 AC3 14 HIS A 164 MET A 165 GLU A 166 GLN A 189 SITE 4 AC3 14 HOH A 601 HOH A 637 SITE 1 AC4 2 ASN A 84 HOH A 737 CRYST1 108.763 81.896 53.672 90.00 103.86 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009194 0.000000 0.002268 0.00000 SCALE2 0.000000 0.012211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019190 0.00000