HEADER DNA BINDING PROTEIN/DNA 01-APR-20 6WE9 TITLE YTH DOMAIN OF HUMAN YTHDC1 WITH 11MER SSDNA CONTAINING N6MA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: SPLICING FACTOR YT521,YT521-B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*GP*(6MA)P*CP*TP*CP*TP*G)-3'); COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDC1, KIAA1966, YT521; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS N6-METHYLADENINE BINDING PROTEIN DOMAIN, DNA BINDING PROTEIN, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 18-OCT-23 6WE9 1 REMARK REVDAT 3 21-OCT-20 6WE9 1 JRNL REVDAT 2 29-JUL-20 6WE9 1 JRNL REVDAT 1 15-JUL-20 6WE9 0 JRNL AUTH C.B.WOODCOCK,J.R.HORTON,J.ZHOU,M.T.BEDFORD,R.M.BLUMENTHAL, JRNL AUTH 2 X.ZHANG,X.CHENG JRNL TITL BIOCHEMICAL AND STRUCTURAL BASIS FOR YTH DOMAIN OF HUMAN JRNL TITL 2 YTHDC1 BINDING TO METHYLATED ADENINE IN DNA. JRNL REF NUCLEIC ACIDS RES. V. 48 10329 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32663306 JRNL DOI 10.1093/NAR/GKAA604 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 54296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3100 - 3.8400 0.97 4107 156 0.2079 0.2295 REMARK 3 2 3.8400 - 3.0500 0.99 4072 157 0.2017 0.2352 REMARK 3 3 3.0500 - 2.6600 0.99 4084 156 0.2221 0.2445 REMARK 3 4 2.6600 - 2.4200 1.00 4112 156 0.2107 0.2365 REMARK 3 5 2.4200 - 2.2500 0.96 3931 150 0.2065 0.2050 REMARK 3 6 2.2400 - 2.1100 0.98 4002 153 0.2061 0.2224 REMARK 3 7 2.1100 - 2.0100 0.99 4028 154 0.2084 0.2381 REMARK 3 8 2.0100 - 1.9200 0.99 4011 153 0.2305 0.2303 REMARK 3 9 1.9200 - 1.8500 0.98 3983 153 0.2600 0.3067 REMARK 3 10 1.8500 - 1.7800 0.96 3903 149 0.2734 0.2860 REMARK 3 11 1.7800 - 1.7300 0.90 3666 140 0.2879 0.3443 REMARK 3 12 1.7300 - 1.6800 0.80 3242 124 0.2929 0.3174 REMARK 3 13 1.6800 - 1.6300 0.68 2726 105 0.2969 0.2847 REMARK 3 14 1.6300 - 1.5900 0.59 2431 92 0.3237 0.3783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.692 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3060 REMARK 3 ANGLE : 0.556 4212 REMARK 3 CHIRALITY : 0.040 460 REMARK 3 PLANARITY : 0.003 465 REMARK 3 DIHEDRAL : 19.435 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 482 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0824 -22.9847 11.5264 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1857 REMARK 3 T33: 0.2802 T12: 0.0019 REMARK 3 T13: 0.0117 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 2.0261 L22: 4.5033 REMARK 3 L33: 4.8348 L12: -6.1847 REMARK 3 L13: -0.3694 L23: 2.3069 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.6580 S13: -1.1920 REMARK 3 S21: 0.4603 S22: 0.1797 S23: 0.4387 REMARK 3 S31: 0.2772 S32: -0.2804 S33: 0.0447 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 492 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4972 -18.1329 11.8643 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.4090 REMARK 3 T33: 0.5016 T12: -0.0780 REMARK 3 T13: -0.1431 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 8.8775 L22: 7.3078 REMARK 3 L33: 2.0684 L12: 6.6957 REMARK 3 L13: 5.2240 L23: 8.0512 REMARK 3 S TENSOR REMARK 3 S11: 0.2796 S12: -0.6129 S13: 0.4235 REMARK 3 S21: 1.1429 S22: 0.0029 S23: -1.1890 REMARK 3 S31: 0.3096 S32: 0.5160 S33: -0.2767 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 500 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3746 -9.2647 21.5983 REMARK 3 T TENSOR REMARK 3 T11: 0.6309 T22: 0.6705 REMARK 3 T33: 0.4049 T12: 0.0355 REMARK 3 T13: -0.2676 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.5792 L22: 6.3462 REMARK 3 L33: 0.1286 L12: -3.1747 REMARK 3 L13: 0.4432 L23: -0.8884 REMARK 3 S TENSOR REMARK 3 S11: -0.4443 S12: -0.7062 S13: 0.7026 REMARK 3 S21: -0.0884 S22: 0.3249 S23: 0.5531 REMARK 3 S31: -1.1682 S32: 0.0528 S33: 0.2621 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6074 -7.2559 -9.6234 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.3081 REMARK 3 T33: 0.3854 T12: -0.0969 REMARK 3 T13: -0.0720 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 6.1477 L22: 2.3642 REMARK 3 L33: 2.6902 L12: 1.0164 REMARK 3 L13: 0.6217 L23: -3.1035 REMARK 3 S TENSOR REMARK 3 S11: -0.2816 S12: 0.6112 S13: -0.0106 REMARK 3 S21: -0.2957 S22: 0.5369 S23: 1.0852 REMARK 3 S31: 0.1653 S32: -0.0753 S33: -0.2121 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5510 10.9138 -24.2039 REMARK 3 T TENSOR REMARK 3 T11: 0.7906 T22: 1.4447 REMARK 3 T33: 1.1977 T12: -0.2187 REMARK 3 T13: 0.6164 T23: -0.1993 REMARK 3 L TENSOR REMARK 3 L11: 1.9249 L22: 0.5106 REMARK 3 L33: 0.0789 L12: 1.1875 REMARK 3 L13: -0.6496 L23: -0.2483 REMARK 3 S TENSOR REMARK 3 S11: 0.7181 S12: 1.4962 S13: 0.2651 REMARK 3 S21: -1.3401 S22: 0.5088 S23: -0.9736 REMARK 3 S31: -1.0861 S32: 0.7886 S33: -0.8275 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 344 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0476 38.2358 -41.4165 REMARK 3 T TENSOR REMARK 3 T11: 0.9157 T22: 1.1840 REMARK 3 T33: 1.4438 T12: 0.1000 REMARK 3 T13: -0.0588 T23: 0.4112 REMARK 3 L TENSOR REMARK 3 L11: 9.1105 L22: 3.6646 REMARK 3 L33: 1.9981 L12: 0.0089 REMARK 3 L13: -3.8752 L23: -5.5925 REMARK 3 S TENSOR REMARK 3 S11: 0.9416 S12: 0.5669 S13: 0.5170 REMARK 3 S21: -0.5968 S22: 1.5704 S23: 1.3559 REMARK 3 S31: -1.0509 S32: -3.7276 S33: -2.3131 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 355 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6756 26.0037 -33.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.6239 T22: 2.3833 REMARK 3 T33: 0.5382 T12: -0.1549 REMARK 3 T13: -0.1951 T23: 0.2976 REMARK 3 L TENSOR REMARK 3 L11: 5.4518 L22: 2.0139 REMARK 3 L33: 1.7074 L12: 2.1957 REMARK 3 L13: 1.5252 L23: 0.8243 REMARK 3 S TENSOR REMARK 3 S11: 0.1066 S12: 1.7936 S13: 1.7027 REMARK 3 S21: -0.5755 S22: -0.0937 S23: 0.8113 REMARK 3 S31: -0.0597 S32: -1.9775 S33: 0.4587 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 421 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2799 21.9137 -29.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.6825 T22: 2.0621 REMARK 3 T33: 1.3404 T12: -0.3717 REMARK 3 T13: -0.0847 T23: -0.1118 REMARK 3 L TENSOR REMARK 3 L11: 5.0102 L22: 9.0103 REMARK 3 L33: 5.6917 L12: 4.2205 REMARK 3 L13: -4.6467 L23: -1.1687 REMARK 3 S TENSOR REMARK 3 S11: 0.2737 S12: 1.1790 S13: -0.1354 REMARK 3 S21: 0.1340 S22: 0.1546 S23: 1.7855 REMARK 3 S31: 0.2973 S32: -1.9714 S33: -0.3650 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 443 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0828 25.1748 -41.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.6845 T22: 2.6314 REMARK 3 T33: 1.0787 T12: 0.1893 REMARK 3 T13: -0.2438 T23: 0.3799 REMARK 3 L TENSOR REMARK 3 L11: 3.1235 L22: 0.7654 REMARK 3 L33: 2.2141 L12: 1.5505 REMARK 3 L13: -2.6041 L23: -1.2979 REMARK 3 S TENSOR REMARK 3 S11: -0.6242 S12: 1.6424 S13: 1.1784 REMARK 3 S21: -1.0710 S22: 0.3703 S23: 0.2587 REMARK 3 S31: 0.2030 S32: -0.6359 S33: 0.4292 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 458 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1026 18.0111 -32.3401 REMARK 3 T TENSOR REMARK 3 T11: 0.9622 T22: 1.3740 REMARK 3 T33: 0.5130 T12: 0.0450 REMARK 3 T13: 0.1793 T23: -0.1108 REMARK 3 L TENSOR REMARK 3 L11: 1.2838 L22: 2.2414 REMARK 3 L33: 5.4072 L12: 0.4940 REMARK 3 L13: -2.5569 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: -0.3193 S12: 0.4981 S13: -0.4041 REMARK 3 S21: -0.5453 S22: -0.1698 S23: -0.1220 REMARK 3 S31: 0.8918 S32: -0.0908 S33: 0.5158 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5171 26.3617 -36.1209 REMARK 3 T TENSOR REMARK 3 T11: 1.0004 T22: 2.3431 REMARK 3 T33: -0.6785 T12: -0.2769 REMARK 3 T13: 0.2881 T23: 0.4440 REMARK 3 L TENSOR REMARK 3 L11: 0.4077 L22: 1.4025 REMARK 3 L33: 1.0677 L12: 0.0565 REMARK 3 L13: -0.0560 L23: -1.2258 REMARK 3 S TENSOR REMARK 3 S11: -0.4518 S12: 0.5560 S13: 0.1009 REMARK 3 S21: -1.0616 S22: -0.1091 S23: -0.5466 REMARK 3 S31: 0.5425 S32: 0.1598 S33: 0.3597 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 492 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0951 35.6560 -45.9207 REMARK 3 T TENSOR REMARK 3 T11: 0.8296 T22: 2.1520 REMARK 3 T33: 1.4770 T12: 0.1382 REMARK 3 T13: -0.1425 T23: 0.7329 REMARK 3 L TENSOR REMARK 3 L11: 3.3159 L22: 3.9374 REMARK 3 L33: 8.1066 L12: -1.6458 REMARK 3 L13: 3.9607 L23: -5.2201 REMARK 3 S TENSOR REMARK 3 S11: 0.5268 S12: 1.8769 S13: 1.1004 REMARK 3 S21: -1.0059 S22: -0.3254 S23: 0.4238 REMARK 3 S31: -0.1715 S32: 0.1799 S33: -0.2478 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0170 -18.5423 20.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.5903 T22: 0.5509 REMARK 3 T33: 0.1812 T12: 0.0011 REMARK 3 T13: 0.0520 T23: 0.0793 REMARK 3 L TENSOR REMARK 3 L11: 6.6661 L22: 8.7628 REMARK 3 L33: 4.9074 L12: 2.3762 REMARK 3 L13: 5.0413 L23: -1.0768 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: -1.8576 S13: -0.3158 REMARK 3 S21: 1.7260 S22: 0.1983 S23: 0.1647 REMARK 3 S31: 0.4323 S32: -0.0102 S33: -0.1209 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9216 -7.7251 1.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.0524 REMARK 3 T33: 0.0530 T12: 0.0153 REMARK 3 T13: -0.0063 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.8445 L22: 2.7190 REMARK 3 L33: 2.6525 L12: 0.3846 REMARK 3 L13: -0.9376 L23: -0.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0707 S13: 0.2752 REMARK 3 S21: 0.0173 S22: 0.0503 S23: 0.0046 REMARK 3 S31: -0.0058 S32: -0.1232 S33: -0.0232 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8594 -2.1841 9.2796 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.2192 REMARK 3 T33: 0.3212 T12: 0.0543 REMARK 3 T13: 0.0473 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 7.8247 L22: 6.0801 REMARK 3 L33: 2.1045 L12: -2.6501 REMARK 3 L13: 5.0749 L23: -3.8007 REMARK 3 S TENSOR REMARK 3 S11: -0.3828 S12: -0.2573 S13: 0.5853 REMARK 3 S21: 0.5669 S22: -0.2028 S23: 0.5473 REMARK 3 S31: -0.6256 S32: -0.7597 S33: 0.4773 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4290 -11.8437 9.4051 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1485 REMARK 3 T33: 0.0410 T12: 0.0156 REMARK 3 T13: -0.0124 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 4.9251 L22: 4.9785 REMARK 3 L33: 9.3842 L12: 0.0912 REMARK 3 L13: -2.6945 L23: 1.8695 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.5838 S13: -0.0438 REMARK 3 S21: 0.4976 S22: 0.0551 S23: 0.0103 REMARK 3 S31: 0.0827 S32: 0.0156 S33: -0.0982 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 404 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7728 -10.1730 4.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: 0.0982 REMARK 3 T33: 0.0676 T12: -0.0087 REMARK 3 T13: -0.0138 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.6740 L22: 6.3442 REMARK 3 L33: 4.6406 L12: -0.6800 REMARK 3 L13: -0.1497 L23: 1.5392 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.0767 S13: 0.2484 REMARK 3 S21: 0.1753 S22: -0.0255 S23: -0.0452 REMARK 3 S31: -0.0438 S32: -0.2228 S33: 0.0527 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0060 4.2068 -0.6144 REMARK 3 T TENSOR REMARK 3 T11: 0.3783 T22: 0.1265 REMARK 3 T33: 0.4247 T12: -0.0280 REMARK 3 T13: -0.0070 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 5.4983 L22: 2.1608 REMARK 3 L33: 8.1638 L12: 0.5571 REMARK 3 L13: -1.4602 L23: 6.8147 REMARK 3 S TENSOR REMARK 3 S11: 0.3944 S12: -0.1677 S13: 1.2024 REMARK 3 S21: -0.9508 S22: 0.2467 S23: -0.3035 REMARK 3 S31: -1.3225 S32: -0.1650 S33: -0.3288 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9268 -14.6728 2.5222 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.1034 REMARK 3 T33: 0.1056 T12: 0.0102 REMARK 3 T13: 0.0023 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.7149 L22: 3.3836 REMARK 3 L33: 1.3859 L12: 0.2671 REMARK 3 L13: 0.0767 L23: 0.8133 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1589 S13: -0.1625 REMARK 3 S21: -0.0494 S22: 0.0696 S23: 0.1751 REMARK 3 S31: -0.0197 S32: -0.1020 S33: -0.0114 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 35.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4R3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.0, 0.2 M AMMONIUM REMARK 280 SULFATE, 29% (W/V) POLYETHYLENE GLYCOL (PEG) 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.26750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.98300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.26750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C2 EDO A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 508 REMARK 465 HIS C 509 REMARK 465 ARG A 508 REMARK 465 HIS A 509 REMARK 465 DT F 10 REMARK 465 DG F 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 366 CG CD OE1 OE2 REMARK 470 LYS C 374 CD CE NZ REMARK 470 ARG C 395 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 404 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 405 OE1 OE2 REMARK 470 LYS C 408 CG CD CE NZ REMARK 470 SER C 424 OG REMARK 470 LYS C 437 CG CD CE NZ REMARK 470 LYS C 444 CE NZ REMARK 470 ARG C 450 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 451 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 452 CG CD OE1 OE2 REMARK 470 LYS C 457 CG CD CE NZ REMARK 470 ARG C 475 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 483 CD OE1 OE2 REMARK 470 ASP C 499 CG OD1 OD2 REMARK 470 TYR C 501 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN C 502 CG CD OE1 NE2 REMARK 470 ILE C 504 CG1 CG2 CD1 REMARK 470 HIS C 505 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 506 CG CD CE NZ REMARK 470 SER A 424 OG REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 GLU A 496 CG CD OE1 OE2 REMARK 470 GLN A 502 CG CD OE1 NE2 REMARK 470 HIS A 505 CG ND1 CD2 CE1 NE2 REMARK 470 DC F 9 C4' O4' C3' O3' C2' C1' N1 REMARK 470 DC F 9 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER C 378 C1 6MA F 6 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 503 34.81 -95.43 REMARK 500 HIS C 505 43.67 -141.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DG B 5 and 6MA B REMARK 800 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 6MA B 6 and DC B REMARK 800 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DG F 5 and 6MA F REMARK 800 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 6MA F 6 and DC F REMARK 800 7 DBREF 6WE9 C 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 DBREF 6WE9 A 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 DBREF 6WE9 B 1 11 PDB 6WE9 6WE9 1 11 DBREF 6WE9 F 1 11 PDB 6WE9 6WE9 1 11 SEQADV 6WE9 GLY C 344 UNP Q96MU7 EXPRESSION TAG SEQADV 6WE9 GLY A 344 UNP Q96MU7 EXPRESSION TAG SEQRES 1 C 166 GLY THR SER LYS LEU LYS TYR VAL LEU GLN ASP ALA ARG SEQRES 2 C 166 PHE PHE LEU ILE LYS SER ASN ASN HIS GLU ASN VAL SER SEQRES 3 C 166 LEU ALA LYS ALA LYS GLY VAL TRP SER THR LEU PRO VAL SEQRES 4 C 166 ASN GLU LYS LYS LEU ASN LEU ALA PHE ARG SER ALA ARG SEQRES 5 C 166 SER VAL ILE LEU ILE PHE SER VAL ARG GLU SER GLY LYS SEQRES 6 C 166 PHE GLN GLY PHE ALA ARG LEU SER SER GLU SER HIS HIS SEQRES 7 C 166 GLY GLY SER PRO ILE HIS TRP VAL LEU PRO ALA GLY MET SEQRES 8 C 166 SER ALA LYS MET LEU GLY GLY VAL PHE LYS ILE ASP TRP SEQRES 9 C 166 ILE CYS ARG ARG GLU LEU PRO PHE THR LYS SER ALA HIS SEQRES 10 C 166 LEU THR ASN PRO TRP ASN GLU HIS LYS PRO VAL LYS ILE SEQRES 11 C 166 GLY ARG ASP GLY GLN GLU ILE GLU LEU GLU CYS GLY THR SEQRES 12 C 166 GLN LEU CYS LEU LEU PHE PRO PRO ASP GLU SER ILE ASP SEQRES 13 C 166 LEU TYR GLN VAL ILE HIS LYS MET ARG HIS SEQRES 1 A 166 GLY THR SER LYS LEU LYS TYR VAL LEU GLN ASP ALA ARG SEQRES 2 A 166 PHE PHE LEU ILE LYS SER ASN ASN HIS GLU ASN VAL SER SEQRES 3 A 166 LEU ALA LYS ALA LYS GLY VAL TRP SER THR LEU PRO VAL SEQRES 4 A 166 ASN GLU LYS LYS LEU ASN LEU ALA PHE ARG SER ALA ARG SEQRES 5 A 166 SER VAL ILE LEU ILE PHE SER VAL ARG GLU SER GLY LYS SEQRES 6 A 166 PHE GLN GLY PHE ALA ARG LEU SER SER GLU SER HIS HIS SEQRES 7 A 166 GLY GLY SER PRO ILE HIS TRP VAL LEU PRO ALA GLY MET SEQRES 8 A 166 SER ALA LYS MET LEU GLY GLY VAL PHE LYS ILE ASP TRP SEQRES 9 A 166 ILE CYS ARG ARG GLU LEU PRO PHE THR LYS SER ALA HIS SEQRES 10 A 166 LEU THR ASN PRO TRP ASN GLU HIS LYS PRO VAL LYS ILE SEQRES 11 A 166 GLY ARG ASP GLY GLN GLU ILE GLU LEU GLU CYS GLY THR SEQRES 12 A 166 GLN LEU CYS LEU LEU PHE PRO PRO ASP GLU SER ILE ASP SEQRES 13 A 166 LEU TYR GLN VAL ILE HIS LYS MET ARG HIS SEQRES 1 B 11 DC DG DC DG DG 6MA DC DT DC DT DG SEQRES 1 F 11 DC DG DC DG DG 6MA DC DT DC DT DG HET 6MA B 6 22 HET 6MA F 6 22 HET EDO A 601 4 HET EDO A 602 4 HET SO4 A 603 5 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET GOL A 608 6 HET GOL A 609 6 HET EDO A 610 4 HETNAM 6MA N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6MA 2(C11 H16 N5 O6 P) FORMUL 5 EDO 7(C2 H6 O2) FORMUL 7 SO4 O4 S 2- FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 HOH *182(H2 O) HELIX 1 AA1 GLY C 344 LEU C 352 1 9 HELIX 2 AA2 HIS C 365 GLY C 375 1 11 HELIX 3 AA3 LEU C 380 ALA C 394 1 15 HELIX 4 AA4 SER C 435 GLY C 440 1 6 HELIX 5 AA5 THR C 456 SER C 458 5 3 HELIX 6 AA6 ASN C 463 GLU C 467 5 5 HELIX 7 AA7 GLU C 481 LEU C 491 1 11 HELIX 8 AA8 THR A 345 LEU A 352 1 8 HELIX 9 AA9 ASN A 364 GLY A 375 1 12 HELIX 10 AB1 LEU A 380 ALA A 394 1 15 HELIX 11 AB2 ALA A 436 GLY A 440 5 5 HELIX 12 AB3 THR A 456 ALA A 459 5 4 HELIX 13 AB4 ASN A 463 GLU A 467 5 5 HELIX 14 AB5 GLU A 481 PHE A 492 1 12 HELIX 15 AB6 LEU A 500 MET A 507 1 8 SHEET 1 AA1 6 VAL C 376 TRP C 377 0 SHEET 2 AA1 6 PHE C 443 CYS C 449 -1 O PHE C 443 N TRP C 377 SHEET 3 AA1 6 GLY C 411 LEU C 415 -1 N ARG C 414 O ASP C 446 SHEET 4 AA1 6 SER C 396 VAL C 403 -1 N VAL C 397 O LEU C 415 SHEET 5 AA1 6 ALA C 355 SER C 362 1 N ILE C 360 O ILE C 400 SHEET 6 AA1 6 GLU C 479 ILE C 480 -1 O ILE C 480 N PHE C 357 SHEET 1 AA2 2 LYS C 408 PHE C 409 0 SHEET 2 AA2 2 LEU C 453 PRO C 454 -1 O LEU C 453 N PHE C 409 SHEET 1 AA3 6 VAL A 376 TRP A 377 0 SHEET 2 AA3 6 PHE A 443 CYS A 449 -1 O PHE A 443 N TRP A 377 SHEET 3 AA3 6 GLY A 411 LEU A 415 -1 N ARG A 414 O ASP A 446 SHEET 4 AA3 6 SER A 396 VAL A 403 -1 N LEU A 399 O ALA A 413 SHEET 5 AA3 6 ALA A 355 SER A 362 1 N ILE A 360 O ILE A 400 SHEET 6 AA3 6 GLU A 479 ILE A 480 -1 O ILE A 480 N PHE A 357 SHEET 1 AA4 2 LYS A 408 PHE A 409 0 SHEET 2 AA4 2 LEU A 453 PRO A 454 -1 O LEU A 453 N PHE A 409 LINK O3' DG B 5 P 6MA B 6 1555 1555 1.61 LINK O3' 6MA B 6 P DC B 7 1555 1555 1.61 LINK O3' DG F 5 P 6MA F 6 1555 1555 1.61 LINK O3' 6MA F 6 P DC F 7 1555 1555 1.59 SITE 1 AC1 7 HIS A 365 SER A 369 LYS A 372 GLN A 410 SITE 2 AC1 7 EDO A 604 HOH A 706 HOH A 762 SITE 1 AC2 4 HIS A 420 HIS A 421 HOH A 701 HOH A 719 SITE 1 AC3 4 ASN A 363 PRO A 431 ALA A 432 HOH A 708 SITE 1 AC4 7 HIS A 365 SER A 406 LYS A 408 GLN A 410 SITE 2 AC4 7 ARG A 451 GLU A 452 EDO A 601 SITE 1 AC5 2 ARG A 404 ARG A 475 SITE 1 AC6 3 PHE A 391 ARG A 392 ALA A 394 SITE 1 AC7 5 ARG A 475 ASP A 476 GLY A 477 GLN A 478 SITE 2 AC7 5 HOH A 704 SITE 1 AC8 5 LEU A 461 THR A 462 GLU A 481 GLU A 483 SITE 2 AC8 5 CYS A 484 SITE 1 AC9 2 TRP A 465 HOH B 105 SITE 1 AD1 27 LYS A 361 SER A 362 ASN A 363 ASN A 367 SITE 2 AD1 27 TRP A 377 SER A 378 LEU A 380 PRO A 381 SITE 3 AD1 27 TRP A 428 HIS A 468 ASP A 476 HOH A 710 SITE 4 AD1 27 HOH A 764 HOH A 781 DC B 3 DG B 4 SITE 5 AD1 27 DC B 7 HOH B 103 HOH B 105 HOH B 107 SITE 6 AD1 27 HOH B 108 HOH B 109 HOH B 111 HOH B 113 SITE 7 AD1 27 HOH B 114 HOH B 117 HOH B 119 SITE 1 AD2 23 LYS A 361 SER A 362 ASN A 363 ASN A 367 SITE 2 AD2 23 TRP A 377 SER A 378 LEU A 380 TRP A 428 SITE 3 AD2 23 ILE A 473 GLY A 474 ARG A 475 ASP A 476 SITE 4 AD2 23 HOH A 710 HOH A 739 HOH A 764 HOH A 781 SITE 5 AD2 23 DG B 5 DT B 8 HOH B 104 HOH B 110 SITE 6 AD2 23 HOH B 113 HOH B 115 HOH B 117 SITE 1 AD3 13 DT B 10 DG B 11 LYS C 361 ASN C 363 SITE 2 AD3 13 TRP C 377 SER C 378 THR C 379 ALA C 432 SITE 3 AD3 13 GLY C 433 MET C 438 ASP C 476 DG F 4 SITE 4 AD3 13 DC F 7 SITE 1 AD4 12 LYS C 361 ASN C 363 TRP C 377 SER C 378 SITE 2 AD4 12 THR C 379 ILE C 473 GLY C 474 ARG C 475 SITE 3 AD4 12 ASP C 476 DG F 5 DT F 8 HOH F 103 CRYST1 119.966 42.535 90.019 90.00 103.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008336 0.000000 0.001995 0.00000 SCALE2 0.000000 0.023510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011423 0.00000