HEADER OXIDOREDUCTASE 07-APR-20 6WH6 TITLE CRYSTAL STRUCTURE OF HUMAN SULFIDE QUINONE OXIDOREDUCTASE IN COMPLEX TITLE 2 WITH COENZYME Q (CYANIDE SOAKED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE:QUINONE OXIDOREDUCTASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SQOR,SULFIDE DEHYDROGENASE-LIKE,SULFIDE QUINONE COMPND 5 OXIDOREDUCTASE; COMPND 6 EC: 1.8.5.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SQOR, SQRDL, CGI-44; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BANERJEE,U.S.CHO,S.MOON REVDAT 5 09-OCT-24 6WH6 1 REMARK REVDAT 4 15-NOV-23 6WH6 1 REMARK REVDAT 3 18-OCT-23 6WH6 1 REMARK REVDAT 2 03-NOV-21 6WH6 1 JRNL LINK REVDAT 1 21-APR-21 6WH6 0 JRNL AUTH A.P.LANDRY,S.MOON,J.BONANATA,U.S.CHO,E.L.COITINO,R.BANERJEE JRNL TITL DISMANTLING AND REBUILDING THE TRISULFIDE COFACTOR JRNL TITL 2 DEMONSTRATES ITS ESSENTIAL ROLE IN HUMAN SULFIDE QUINONE JRNL TITL 3 OXIDOREDUCTASE. JRNL REF J.AM.CHEM.SOC. V. 142 14295 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32787249 JRNL DOI 10.1021/JACS.0C06066 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 56117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.540 REMARK 3 FREE R VALUE TEST SET COUNT : 3338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2000 - 6.4600 0.99 4320 164 0.1742 0.1794 REMARK 3 2 6.4600 - 5.1300 0.99 4372 156 0.1410 0.1850 REMARK 3 3 5.1300 - 4.4800 1.00 4388 162 0.1209 0.1621 REMARK 3 4 4.4800 - 4.0700 1.00 4382 161 0.1258 0.1549 REMARK 3 5 4.0700 - 3.7800 1.00 4387 161 0.1386 0.1657 REMARK 3 6 3.7800 - 3.5600 1.00 4390 157 0.1527 0.1963 REMARK 3 7 3.5600 - 3.3800 1.00 4359 166 0.1686 0.2405 REMARK 3 8 3.3800 - 3.2300 1.00 4378 161 0.1853 0.2440 REMARK 3 9 3.2300 - 3.1100 0.99 4335 154 0.1990 0.2461 REMARK 3 10 3.1100 - 3.0000 0.99 4334 162 0.2157 0.2419 REMARK 3 11 3.0000 - 2.9100 0.99 4324 158 0.2122 0.2672 REMARK 3 12 2.9100 - 2.8200 0.98 4332 161 0.2052 0.2574 REMARK 3 13 2.8200 - 2.7500 0.97 4287 148 0.2034 0.2720 REMARK 3 14 2.7500 - 2.6800 0.95 4160 159 0.1952 0.2342 REMARK 3 15 2.6800 - 2.6200 0.92 4017 145 0.1984 0.2839 REMARK 3 16 2.6200 - 2.5700 0.87 3873 137 0.2059 0.2855 REMARK 3 17 2.5700 - 2.5100 0.82 3619 131 0.2209 0.2409 REMARK 3 18 2.5100 - 2.4700 0.78 3410 127 0.2153 0.2479 REMARK 3 19 2.4700 - 2.4200 0.72 3166 115 0.2100 0.3132 REMARK 3 20 2.4200 - 2.3800 0.66 2922 108 0.2174 0.2864 REMARK 3 21 2.3800 - 2.3400 0.61 2633 101 0.2227 0.2431 REMARK 3 22 2.3400 - 2.3100 0.56 2461 90 0.2123 0.2459 REMARK 3 23 2.3100 - 2.2700 0.53 2347 85 0.2226 0.2864 REMARK 3 24 2.2700 - 2.2400 0.41 1782 69 0.2389 0.2662 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.232 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6734 REMARK 3 ANGLE : 0.922 9136 REMARK 3 CHIRALITY : 0.055 987 REMARK 3 PLANARITY : 0.006 1146 REMARK 3 DIHEDRAL : 5.627 3977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 41 THROUGH 447) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6674 27.5604 -24.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1887 REMARK 3 T33: 0.1925 T12: -0.0217 REMARK 3 T13: -0.0050 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.8148 L22: 1.6648 REMARK 3 L33: 1.9144 L12: 0.1689 REMARK 3 L13: -0.3890 L23: 0.0857 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.0566 S13: -0.0872 REMARK 3 S21: -0.0272 S22: 0.0497 S23: -0.1527 REMARK 3 S31: 0.0438 S32: 0.1365 S33: 0.0179 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 42 THROUGH 446) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6709 59.9517 -10.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.1645 REMARK 3 T33: 0.2280 T12: 0.0048 REMARK 3 T13: -0.0555 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.4275 L22: 1.4494 REMARK 3 L33: 1.4324 L12: -0.6411 REMARK 3 L13: 0.6351 L23: -0.3300 REMARK 3 S TENSOR REMARK 3 S11: -0.1178 S12: -0.0233 S13: 0.2552 REMARK 3 S21: 0.2092 S22: 0.0458 S23: -0.2352 REMARK 3 S31: -0.2237 S32: 0.0364 S33: 0.0655 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6OIB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.19650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.02300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.87300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.02300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.19650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.87300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 448 REMARK 465 MET A 449 REMARK 465 SER A 450 REMARK 465 LEU A 451 REMARK 465 GLU A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 MET B 41 REMARK 465 LEU B 447 REMARK 465 GLY B 448 REMARK 465 MET B 449 REMARK 465 SER B 450 REMARK 465 LEU B 451 REMARK 465 GLU B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 196 39.98 -93.24 REMARK 500 CSS A 201 74.81 45.46 REMARK 500 ASN A 386 26.44 -148.65 REMARK 500 ASP A 394 -165.14 -128.88 REMARK 500 MET A 429 -57.24 -132.96 REMARK 500 HIS A 446 80.68 -66.96 REMARK 500 ASP B 132 32.12 -96.62 REMARK 500 CSS B 201 76.34 42.69 REMARK 500 ASN B 386 21.84 -150.53 REMARK 500 ASP B 394 -163.97 -119.30 REMARK 500 MET B 429 -56.21 -129.18 REMARK 500 PHE B 445 2.38 -64.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UQ1 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UQ1 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UQ1 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYN B 502 and CYS B REMARK 800 379 DBREF 6WH6 A 42 450 UNP Q9Y6N5 SQOR_HUMAN 42 450 DBREF 6WH6 B 42 450 UNP Q9Y6N5 SQOR_HUMAN 42 450 SEQADV 6WH6 MET A 41 UNP Q9Y6N5 INITIATING METHIONINE SEQADV 6WH6 LEU A 451 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 GLU A 452 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 453 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 454 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 455 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 456 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 457 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS A 458 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 MET B 41 UNP Q9Y6N5 INITIATING METHIONINE SEQADV 6WH6 LEU B 451 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 GLU B 452 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 453 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 454 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 455 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 456 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 457 UNP Q9Y6N5 EXPRESSION TAG SEQADV 6WH6 HIS B 458 UNP Q9Y6N5 EXPRESSION TAG SEQRES 1 A 418 MET ASN HIS TYR GLU VAL LEU VAL LEU GLY GLY GLY SER SEQRES 2 A 418 GLY GLY ILE THR MET ALA ALA ARG MET LYS ARG LYS VAL SEQRES 3 A 418 GLY ALA GLU ASN VAL ALA ILE VAL GLU PRO SER GLU ARG SEQRES 4 A 418 HIS PHE TYR GLN PRO ILE TRP THR LEU VAL GLY ALA GLY SEQRES 5 A 418 ALA LYS GLN LEU SER SER SER GLY ARG PRO THR ALA SER SEQRES 6 A 418 VAL ILE PRO SER GLY VAL GLU TRP ILE LYS ALA ARG VAL SEQRES 7 A 418 THR GLU LEU ASN PRO ASP LYS ASN CYS ILE HIS THR ASP SEQRES 8 A 418 ASP ASP GLU LYS ILE SER TYR ARG TYR LEU ILE ILE ALA SEQRES 9 A 418 LEU GLY ILE GLN LEU ASP TYR GLU LYS ILE LYS GLY LEU SEQRES 10 A 418 PRO GLU GLY PHE ALA HIS PRO LYS ILE GLY SER ASN TYR SEQRES 11 A 418 SER VAL LYS THR VAL GLU LYS THR TRP LYS ALA LEU GLN SEQRES 12 A 418 ASP PHE LYS GLU GLY ASN ALA ILE PHE THR PHE PRO ASN SEQRES 13 A 418 THR PRO VAL LYS CSS ALA GLY ALA PRO GLN LYS ILE MET SEQRES 14 A 418 TYR LEU SER GLU ALA TYR PHE ARG LYS THR GLY LYS ARG SEQRES 15 A 418 SER LYS ALA ASN ILE ILE PHE ASN THR SER LEU GLY ALA SEQRES 16 A 418 ILE PHE GLY VAL LYS LYS TYR ALA ASP ALA LEU GLN GLU SEQRES 17 A 418 ILE ILE GLN GLU ARG ASN LEU THR VAL ASN TYR LYS LYS SEQRES 18 A 418 ASN LEU ILE GLU VAL ARG ALA ASP LYS GLN GLU ALA VAL SEQRES 19 A 418 PHE GLU ASN LEU ASP LYS PRO GLY GLU THR GLN VAL ILE SEQRES 20 A 418 SER TYR GLU MET LEU HIS VAL THR PRO PRO MET SER PRO SEQRES 21 A 418 PRO ASP VAL LEU LYS THR SER PRO VAL ALA ASP ALA ALA SEQRES 22 A 418 GLY TRP VAL ASP VAL ASP LYS GLU THR LEU GLN HIS ARG SEQRES 23 A 418 ARG TYR PRO ASN VAL PHE GLY ILE GLY ASP CYS THR ASN SEQRES 24 A 418 LEU PRO THR SER LYS THR ALA ALA ALA VAL ALA ALA GLN SEQRES 25 A 418 SER GLY ILE LEU ASP ARG THR ILE SER VAL ILE MET LYS SEQRES 26 A 418 ASN GLN THR PRO THR LYS LYS TYR ASP GLY TYR THR SER SEQRES 27 A 418 CYS PRO LEU VAL THR GLY TYR ASN ARG VAL ILE LEU ALA SEQRES 28 A 418 GLU PHE ASP TYR LYS ALA GLU PRO LEU GLU THR PHE PRO SEQRES 29 A 418 PHE ASP GLN SER LYS GLU ARG LEU SER MET TYR LEU MET SEQRES 30 A 418 LYS ALA ASP LEU MET PRO PHE LEU TYR TRP ASN MET MET SEQRES 31 A 418 LEU ARG GLY TYR TRP GLY GLY PRO ALA PHE LEU ARG LYS SEQRES 32 A 418 LEU PHE HIS LEU GLY MET SER LEU GLU HIS HIS HIS HIS SEQRES 33 A 418 HIS HIS SEQRES 1 B 418 MET ASN HIS TYR GLU VAL LEU VAL LEU GLY GLY GLY SER SEQRES 2 B 418 GLY GLY ILE THR MET ALA ALA ARG MET LYS ARG LYS VAL SEQRES 3 B 418 GLY ALA GLU ASN VAL ALA ILE VAL GLU PRO SER GLU ARG SEQRES 4 B 418 HIS PHE TYR GLN PRO ILE TRP THR LEU VAL GLY ALA GLY SEQRES 5 B 418 ALA LYS GLN LEU SER SER SER GLY ARG PRO THR ALA SER SEQRES 6 B 418 VAL ILE PRO SER GLY VAL GLU TRP ILE LYS ALA ARG VAL SEQRES 7 B 418 THR GLU LEU ASN PRO ASP LYS ASN CYS ILE HIS THR ASP SEQRES 8 B 418 ASP ASP GLU LYS ILE SER TYR ARG TYR LEU ILE ILE ALA SEQRES 9 B 418 LEU GLY ILE GLN LEU ASP TYR GLU LYS ILE LYS GLY LEU SEQRES 10 B 418 PRO GLU GLY PHE ALA HIS PRO LYS ILE GLY SER ASN TYR SEQRES 11 B 418 SER VAL LYS THR VAL GLU LYS THR TRP LYS ALA LEU GLN SEQRES 12 B 418 ASP PHE LYS GLU GLY ASN ALA ILE PHE THR PHE PRO ASN SEQRES 13 B 418 THR PRO VAL LYS CSS ALA GLY ALA PRO GLN LYS ILE MET SEQRES 14 B 418 TYR LEU SER GLU ALA TYR PHE ARG LYS THR GLY LYS ARG SEQRES 15 B 418 SER LYS ALA ASN ILE ILE PHE ASN THR SER LEU GLY ALA SEQRES 16 B 418 ILE PHE GLY VAL LYS LYS TYR ALA ASP ALA LEU GLN GLU SEQRES 17 B 418 ILE ILE GLN GLU ARG ASN LEU THR VAL ASN TYR LYS LYS SEQRES 18 B 418 ASN LEU ILE GLU VAL ARG ALA ASP LYS GLN GLU ALA VAL SEQRES 19 B 418 PHE GLU ASN LEU ASP LYS PRO GLY GLU THR GLN VAL ILE SEQRES 20 B 418 SER TYR GLU MET LEU HIS VAL THR PRO PRO MET SER PRO SEQRES 21 B 418 PRO ASP VAL LEU LYS THR SER PRO VAL ALA ASP ALA ALA SEQRES 22 B 418 GLY TRP VAL ASP VAL ASP LYS GLU THR LEU GLN HIS ARG SEQRES 23 B 418 ARG TYR PRO ASN VAL PHE GLY ILE GLY ASP CYS THR ASN SEQRES 24 B 418 LEU PRO THR SER LYS THR ALA ALA ALA VAL ALA ALA GLN SEQRES 25 B 418 SER GLY ILE LEU ASP ARG THR ILE SER VAL ILE MET LYS SEQRES 26 B 418 ASN GLN THR PRO THR LYS LYS TYR ASP GLY TYR THR SER SEQRES 27 B 418 CYS PRO LEU VAL THR GLY TYR ASN ARG VAL ILE LEU ALA SEQRES 28 B 418 GLU PHE ASP TYR LYS ALA GLU PRO LEU GLU THR PHE PRO SEQRES 29 B 418 PHE ASP GLN SER LYS GLU ARG LEU SER MET TYR LEU MET SEQRES 30 B 418 LYS ALA ASP LEU MET PRO PHE LEU TYR TRP ASN MET MET SEQRES 31 B 418 LEU ARG GLY TYR TRP GLY GLY PRO ALA PHE LEU ARG LYS SEQRES 32 B 418 LEU PHE HIS LEU GLY MET SER LEU GLU HIS HIS HIS HIS SEQRES 33 B 418 HIS HIS MODRES 6WH6 CSS A 201 CYS MODIFIED RESIDUE MODRES 6WH6 CSS B 201 CYS MODIFIED RESIDUE HET CSS A 201 7 HET CSS B 201 7 HET FAD A 501 53 HET CYN A 502 2 HET UQ1 A 503 18 HET UQ1 A 504 18 HET FAD B 501 53 HET CYN B 502 2 HET UQ1 B 503 18 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CYN CYANIDE ION HETNAM UQ1 UBIQUINONE-1 FORMUL 1 CSS 2(C3 H7 N O2 S2) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CYN 2(C N 1-) FORMUL 5 UQ1 3(C14 H18 O4) FORMUL 10 HOH *125(H2 O) HELIX 1 AA1 GLY A 52 GLY A 67 1 16 HELIX 2 AA2 ILE A 85 ALA A 91 1 7 HELIX 3 AA3 LEU A 96 SER A 98 5 3 HELIX 4 AA4 THR A 103 ILE A 107 1 5 HELIX 5 AA5 PRO A 123 LYS A 125 5 3 HELIX 6 AA6 TYR A 151 ILE A 154 5 4 HELIX 7 AA7 PRO A 158 HIS A 163 5 6 HELIX 8 AA8 THR A 174 PHE A 185 1 12 HELIX 9 AA9 GLY A 203 THR A 219 1 17 HELIX 10 AB1 LYS A 221 SER A 223 5 3 HELIX 11 AB2 VAL A 239 ARG A 253 1 15 HELIX 12 AB3 ALA A 268 LYS A 270 5 3 HELIX 13 AB4 PRO A 301 THR A 306 1 6 HELIX 14 AB5 GLY A 335 THR A 338 5 4 HELIX 15 AB6 THR A 345 LYS A 365 1 21 HELIX 16 AB7 ARG A 411 MET A 429 1 19 HELIX 17 AB8 MET A 430 GLY A 433 5 4 HELIX 18 AB9 PRO A 438 HIS A 446 1 9 HELIX 19 AC1 GLY B 52 GLY B 67 1 16 HELIX 20 AC2 ILE B 85 ALA B 91 1 7 HELIX 21 AC3 LEU B 96 SER B 98 5 3 HELIX 22 AC4 THR B 103 ILE B 107 1 5 HELIX 23 AC5 PRO B 123 LYS B 125 5 3 HELIX 24 AC6 TYR B 151 ILE B 154 5 4 HELIX 25 AC7 PRO B 158 HIS B 163 5 6 HELIX 26 AC8 THR B 174 PHE B 185 1 12 HELIX 27 AC9 GLY B 203 THR B 219 1 17 HELIX 28 AD1 LYS B 221 SER B 223 5 3 HELIX 29 AD2 VAL B 239 ARG B 253 1 15 HELIX 30 AD3 ALA B 268 LYS B 270 5 3 HELIX 31 AD4 PRO B 301 THR B 306 1 6 HELIX 32 AD5 GLY B 335 THR B 338 5 4 HELIX 33 AD6 THR B 345 LYS B 365 1 21 HELIX 34 AD7 ARG B 411 ASP B 420 1 10 HELIX 35 AD8 ASP B 420 MET B 429 1 10 HELIX 36 AD9 PRO B 438 PHE B 445 1 8 SHEET 1 AA1 6 GLU A 112 ILE A 114 0 SHEET 2 AA1 6 VAL A 71 VAL A 74 1 N ILE A 73 O ILE A 114 SHEET 3 AA1 6 ASN A 42 LEU A 49 1 N VAL A 48 O ALA A 72 SHEET 4 AA1 6 GLU A 134 ILE A 143 1 O ILE A 142 N LEU A 49 SHEET 5 AA1 6 CYS A 127 THR A 130 -1 N ILE A 128 O ILE A 136 SHEET 6 AA1 6 VAL A 118 ASN A 122 -1 N THR A 119 O HIS A 129 SHEET 1 AA2 5 GLU A 112 ILE A 114 0 SHEET 2 AA2 5 VAL A 71 VAL A 74 1 N ILE A 73 O ILE A 114 SHEET 3 AA2 5 ASN A 42 LEU A 49 1 N VAL A 48 O ALA A 72 SHEET 4 AA2 5 GLU A 134 ILE A 143 1 O ILE A 142 N LEU A 49 SHEET 5 AA2 5 VAL A 331 GLY A 333 1 O PHE A 332 N ILE A 143 SHEET 1 AA3 2 ARG A 79 PHE A 81 0 SHEET 2 AA3 2 GLY A 100 PRO A 102 -1 O ARG A 101 N HIS A 80 SHEET 1 AA4 2 GLN A 148 LEU A 149 0 SHEET 2 AA4 2 MET A 298 SER A 299 -1 O SER A 299 N GLN A 148 SHEET 1 AA5 5 ILE A 166 GLY A 167 0 SHEET 2 AA5 5 MET A 291 HIS A 293 1 O LEU A 292 N GLY A 167 SHEET 3 AA5 5 GLY A 188 PHE A 194 1 N ILE A 191 O MET A 291 SHEET 4 AA5 5 ALA A 225 THR A 231 1 O ASN A 226 N GLY A 188 SHEET 5 AA5 5 THR A 256 ASN A 258 1 O THR A 256 N PHE A 229 SHEET 1 AA6 3 LYS A 261 ARG A 267 0 SHEET 2 AA6 3 GLU A 272 ASN A 277 -1 O GLU A 272 N ARG A 267 SHEET 3 AA6 3 THR A 284 SER A 288 -1 O GLN A 285 N PHE A 275 SHEET 1 AA7 2 THR A 377 GLY A 384 0 SHEET 2 AA7 2 ARG A 387 PHE A 393 -1 O ALA A 391 N CYS A 379 SHEET 1 AA8 6 GLU B 112 ILE B 114 0 SHEET 2 AA8 6 VAL B 71 VAL B 74 1 N ILE B 73 O ILE B 114 SHEET 3 AA8 6 HIS B 43 LEU B 49 1 N VAL B 48 O ALA B 72 SHEET 4 AA8 6 LYS B 135 ILE B 143 1 O ILE B 142 N LEU B 49 SHEET 5 AA8 6 CYS B 127 THR B 130 -1 N ILE B 128 O ILE B 136 SHEET 6 AA8 6 VAL B 118 ASN B 122 -1 N THR B 119 O HIS B 129 SHEET 1 AA9 5 GLU B 112 ILE B 114 0 SHEET 2 AA9 5 VAL B 71 VAL B 74 1 N ILE B 73 O ILE B 114 SHEET 3 AA9 5 HIS B 43 LEU B 49 1 N VAL B 48 O ALA B 72 SHEET 4 AA9 5 LYS B 135 ILE B 143 1 O ILE B 142 N LEU B 49 SHEET 5 AA9 5 VAL B 331 GLY B 333 1 O PHE B 332 N ILE B 143 SHEET 1 AB1 2 ARG B 79 PHE B 81 0 SHEET 2 AB1 2 GLY B 100 PRO B 102 -1 O ARG B 101 N HIS B 80 SHEET 1 AB2 2 GLN B 148 LEU B 149 0 SHEET 2 AB2 2 MET B 298 SER B 299 -1 O SER B 299 N GLN B 148 SHEET 1 AB3 5 ILE B 166 GLY B 167 0 SHEET 2 AB3 5 MET B 291 HIS B 293 1 O LEU B 292 N GLY B 167 SHEET 3 AB3 5 GLY B 188 PHE B 194 1 N ILE B 191 O HIS B 293 SHEET 4 AB3 5 ALA B 225 THR B 231 1 O ASN B 230 N PHE B 192 SHEET 5 AB3 5 THR B 256 ASN B 258 1 O ASN B 258 N PHE B 229 SHEET 1 AB4 3 LYS B 261 ARG B 267 0 SHEET 2 AB4 3 GLU B 272 ASN B 277 -1 O VAL B 274 N GLU B 265 SHEET 3 AB4 3 THR B 284 SER B 288 -1 O ILE B 287 N ALA B 273 SHEET 1 AB5 2 THR B 377 GLY B 384 0 SHEET 2 AB5 2 ARG B 387 PHE B 393 -1 O ALA B 391 N CYS B 379 LINK C LYS A 200 N CSS A 201 1555 1555 1.33 LINK C CSS A 201 N ALA A 202 1555 1555 1.33 LINK SD CSS A 201 N CYN A 502 1555 1555 1.64 LINK SG CYS A 379 C CYN A 502 1555 1555 1.77 LINK C LYS B 200 N CSS B 201 1555 1555 1.33 LINK C CSS B 201 N ALA B 202 1555 1555 1.33 LINK SD CSS B 201 N CYN B 502 1555 1555 1.64 LINK SG CYS B 379 C CYN B 502 1555 1555 1.77 CISPEP 1 LEU A 157 PRO A 158 0 1.19 CISPEP 2 LEU B 157 PRO B 158 0 3.84 SITE 1 AC1 32 GLY A 52 SER A 53 GLY A 54 GLU A 75 SITE 2 AC1 32 PRO A 76 GLN A 83 PRO A 84 ARG A 117 SITE 3 AC1 32 VAL A 118 ALA A 144 LEU A 145 GLY A 146 SITE 4 AC1 32 ASN A 169 TYR A 170 CSS A 201 LYS A 207 SITE 5 AC1 32 GLY A 335 ASP A 336 THR A 345 ALA A 346 SITE 6 AC1 32 ALA A 347 PRO A 380 LYS A 418 UQ1 A 503 SITE 7 AC1 32 HOH A 602 HOH A 609 HOH A 612 HOH A 615 SITE 8 AC1 32 HOH A 616 HOH A 624 HOH A 630 HOH A 651 SITE 1 AC2 2 CSS A 201 CYS A 379 SITE 1 AC3 10 TYR A 82 ALA A 346 ALA A 347 TYR A 376 SITE 2 AC3 10 SER A 378 GLU A 392 MET A 422 MET A 430 SITE 3 AC3 10 TRP A 435 FAD A 501 SITE 1 AC4 6 GLN A 247 GLN A 251 LEU A 255 THR A 256 SITE 2 AC4 6 VAL A 257 TYR A 259 SITE 1 AC5 30 GLY B 52 SER B 53 GLY B 54 GLU B 75 SITE 2 AC5 30 PRO B 76 GLN B 83 PRO B 84 ARG B 117 SITE 3 AC5 30 VAL B 118 LEU B 145 GLY B 146 ASN B 169 SITE 4 AC5 30 TYR B 170 CSS B 201 LYS B 207 GLY B 335 SITE 5 AC5 30 ASP B 336 LYS B 344 THR B 345 ALA B 346 SITE 6 AC5 30 ALA B 347 PRO B 380 LYS B 418 UQ1 B 503 SITE 7 AC5 30 HOH B 603 HOH B 607 HOH B 609 HOH B 610 SITE 8 AC5 30 HOH B 639 HOH B 657 SITE 1 AC6 10 TYR B 82 ALA B 346 ALA B 347 TYR B 376 SITE 2 AC6 10 SER B 378 GLU B 392 MET B 422 MET B 430 SITE 3 AC6 10 TRP B 435 FAD B 501 SITE 1 AC7 6 CSS B 201 SER B 378 PRO B 380 LEU B 381 SITE 2 AC7 6 ILE B 389 ALA B 391 CRYST1 78.393 111.746 134.046 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007460 0.00000