HEADER VIRAL PROTEIN/DNA 08-APR-20 6WHM TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE WILD TITLE 2 TYPE BOUND TO DNA OLIGOMER TAGC (CLEAVED TTAGCATT, 5MM OVERNIGHT DNA TITLE 3 SOAK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-X PROTEIN,POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*AP*GP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 VARIANT: 2009/H1N1/CALIFORNIA; SOURCE 7 CELL_LINE: 2009/H1N1/CALIFORNIA; SOURCE 8 GENE: PA-X, PA; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS NUCLEASE, INFLUENZA, DNA OLIGOMER, CLEAVED, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,G.KUMAR,T.WEBB,S.W.WHITE REVDAT 3 18-OCT-23 6WHM 1 REMARK REVDAT 2 03-MAR-21 6WHM 1 JRNL REVDAT 1 03-FEB-21 6WHM 0 JRNL AUTH G.KUMAR,M.CUYPERS,R.R.WEBBY,T.R.WEBB,S.W.WHITE JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 ENDONUCLEASE ACTIVITY OF THE INFLUENZA VIRUS CAP-SNATCHING JRNL TITL 3 MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 49 1609 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33469660 JRNL DOI 10.1093/NAR/GKAA1294 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3500 - 3.6800 0.99 3035 157 0.1617 0.1956 REMARK 3 2 3.6800 - 2.9200 1.00 2949 120 0.1793 0.2505 REMARK 3 3 2.9200 - 2.5500 1.00 2880 158 0.1879 0.2061 REMARK 3 4 2.5500 - 2.3200 1.00 2852 156 0.1855 0.2175 REMARK 3 5 2.3200 - 2.1500 1.00 2858 132 0.1860 0.2554 REMARK 3 6 2.1500 - 2.0200 1.00 2887 129 0.2067 0.2232 REMARK 3 7 2.0200 - 1.9200 0.98 2791 131 0.2579 0.2998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.0336 200.9506 276.5012 REMARK 3 T TENSOR REMARK 3 T11: 0.4744 T22: 0.3970 REMARK 3 T33: 0.3925 T12: -0.0321 REMARK 3 T13: 0.1783 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 6.3271 L22: 2.2290 REMARK 3 L33: 7.9082 L12: 1.6647 REMARK 3 L13: 4.9264 L23: 1.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: 0.7544 S13: -0.2214 REMARK 3 S21: -0.1516 S22: -0.0454 S23: 0.0149 REMARK 3 S31: 0.5165 S32: 0.4621 S33: -0.0798 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 138.1961 201.0240 290.5245 REMARK 3 T TENSOR REMARK 3 T11: 0.4346 T22: 0.3256 REMARK 3 T33: 0.3271 T12: -0.0212 REMARK 3 T13: 0.1130 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 8.3143 L22: 2.9199 REMARK 3 L33: 2.2743 L12: 0.2312 REMARK 3 L13: 0.5522 L23: -0.6957 REMARK 3 S TENSOR REMARK 3 S11: 0.3279 S12: -0.0342 S13: 0.1691 REMARK 3 S21: 0.1055 S22: -0.3205 S23: -0.0802 REMARK 3 S31: 0.2732 S32: 0.1316 S33: 0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 127.3521 193.6817 296.3051 REMARK 3 T TENSOR REMARK 3 T11: 0.6937 T22: 0.4071 REMARK 3 T33: 0.4943 T12: -0.1538 REMARK 3 T13: 0.1262 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 8.8424 L22: 4.4339 REMARK 3 L33: 6.4600 L12: 5.1022 REMARK 3 L13: 1.3033 L23: -1.5476 REMARK 3 S TENSOR REMARK 3 S11: 0.5369 S12: -0.3625 S13: -1.0489 REMARK 3 S21: -0.0088 S22: -0.3980 S23: -0.2686 REMARK 3 S31: 1.0655 S32: -0.0473 S33: -0.1451 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.5274 203.6061 289.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.4162 T22: 0.3374 REMARK 3 T33: 0.3979 T12: -0.1351 REMARK 3 T13: 0.1848 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 5.0088 L22: 0.8028 REMARK 3 L33: 6.9439 L12: -0.5968 REMARK 3 L13: 3.1448 L23: 0.3903 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.4052 S13: -0.1300 REMARK 3 S21: 0.0284 S22: -0.1608 S23: 0.1059 REMARK 3 S31: 0.5613 S32: -0.7296 S33: 0.0141 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.4721 189.5782 285.6444 REMARK 3 T TENSOR REMARK 3 T11: 1.7786 T22: 1.0780 REMARK 3 T33: 2.1463 T12: -0.3218 REMARK 3 T13: 0.8031 T23: 0.4044 REMARK 3 L TENSOR REMARK 3 L11: 0.5660 L22: 4.7036 REMARK 3 L33: 7.7573 L12: 0.2847 REMARK 3 L13: 0.5907 L23: -5.4098 REMARK 3 S TENSOR REMARK 3 S11: -0.9354 S12: -0.5079 S13: -3.4639 REMARK 3 S21: -2.8905 S22: -0.1671 S23: -2.1791 REMARK 3 S31: 2.7436 S32: 0.5116 S33: 1.3411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000247760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 0.02M MGCL2, 0.02M MNCL2., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.94250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.14750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.94250 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.14750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.94250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.14750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.94250 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.14750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.94250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.14750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.94250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.14750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.94250 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.14750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.94250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.94250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 465 DT B 0 REMARK 465 DA B 5 REMARK 465 DT B 6 REMARK 465 DT B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 102 CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 138 -74.12 -71.24 REMARK 500 LYS A 139 -61.60 61.50 REMARK 500 SER A 140 89.41 -53.68 REMARK 500 LYS A 158 19.18 58.88 REMARK 500 THR A 162 -57.82 67.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 432 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 93.5 REMARK 620 3 GLU A 119 OE2 154.4 105.5 REMARK 620 4 ILE A 120 O 77.0 91.4 85.5 REMARK 620 5 HOH B 102 O 81.6 171.1 77.2 80.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 GLU A 119 OE2 99.0 REMARK 620 3 ILE A 120 O 91.0 92.5 REMARK 620 4 HOH B 102 O 176.2 84.5 90.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD1 REMARK 620 2 DT B 1 OP1 156.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 207 DBREF1 6WHM A 1 50 UNP A0A481PFF5_9INFA DBREF2 6WHM A A0A481PFF5 1 50 DBREF 6WHM A 74 196 UNP C6H0Y9 C6H0Y9_9INFA 74 196 DBREF 6WHM B 0 7 PDB 6WHM 6WHM 0 7 SEQADV 6WHM MET A -19 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM GLY A -18 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM SER A -17 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM SER A -16 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -15 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -14 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -13 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -12 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -11 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A -10 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM SER A -9 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM SER A -8 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM GLY A -7 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM LEU A -6 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM VAL A -5 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM PRO A -4 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM ARG A -3 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM GLY A -2 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM SER A -1 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM HIS A 0 UNP A0A481PFF EXPRESSION TAG SEQADV 6WHM GLY A 51 UNP A0A481PFF LINKER SEQADV 6WHM GLY A 52 UNP A0A481PFF LINKER SEQADV 6WHM SER A 53 UNP A0A481PFF LINKER SEQADV 6WHM LYS A 73 UNP A0A481PFF LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG SEQRES 1 B 8 DT DT DA DG DC DA DT DT HET GOL A 201 6 HET GOL A 202 6 HET MG A 203 1 HET MN A 204 1 HET SO4 A 205 5 HET SO4 A 206 5 HET MG A 207 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 MN MN 2+ FORMUL 7 SO4 2(O4 S 2-) FORMUL 10 HOH *136(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 137 1 12 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN B MN A 204 1555 1555 2.53 LINK OD2 ASP A 108 MG A MG A 203 1555 1555 2.16 LINK OD2 ASP A 108 MN B MN A 204 1555 1555 1.94 LINK OD1 ASP A 108 MG MG A 207 1555 1555 2.00 LINK OE2 GLU A 119 MG A MG A 203 1555 1555 1.85 LINK OE2 GLU A 119 MN B MN A 204 1555 1555 1.90 LINK O ILE A 120 MG A MG A 203 1555 1555 2.13 LINK O ILE A 120 MN B MN A 204 1555 1555 2.32 LINK MG A MG A 203 O HOH B 102 1555 1555 2.09 LINK MN B MN A 204 O HOH B 102 1555 1555 2.33 LINK MG MG A 207 OP1 DT B 1 1555 1555 2.86 SITE 1 AC1 3 GLU A 80 GLY A 81 HOH A 304 SITE 1 AC2 4 TRP A 88 ASN A 92 LYS A 102 HOH A 316 SITE 1 AC3 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC3 6 MG A 207 HOH B 102 SITE 1 AC4 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC4 6 MG A 207 HOH B 102 SITE 1 AC5 3 SER A 53 ARG A 75 LYS A 113 SITE 1 AC6 4 GLU A 31 THR A 32 ASN A 33 LYS A 34 SITE 1 AC7 6 HIS A 41 GLU A 80 ASP A 108 MG A 203 SITE 2 AC7 6 MN A 204 DT B 1 CRYST1 89.885 89.885 134.295 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007446 0.00000