HEADER HYDROLASE/HYDROLASE INHIBITOR 08-APR-20 6WHN TITLE HISTONE DEACETYLASES COMPLEX WITH PEPTIDE MACROCYCLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HD2; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: U2M-ASN-PRO-LYS-GLN-DLY-TRP-GLY PEPTIDE MACROCYCLE; COMPND 9 CHAIN: F, G, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ANCHOR EXTENSION, DE NOVO DESIGN MACROCYCLES, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BERA,P.HOSSEINZADEH,P.WATSON,D.BAKER REVDAT 5 15-NOV-23 6WHN 1 REMARK REVDAT 4 18-OCT-23 6WHN 1 REMARK REVDAT 3 28-JUL-21 6WHN 1 JRNL REVDAT 2 28-APR-21 6WHN 1 REMARK REVDAT 1 21-APR-21 6WHN 0 JRNL AUTH P.HOSSEINZADEH,P.R.WATSON,T.W.CRAVEN,X.LI,S.RETTIE, JRNL AUTH 2 F.PARDO-AVILA,A.K.BERA,V.K.MULLIGAN,P.LU,A.S.FORD, JRNL AUTH 3 B.D.WEITZNER,L.J.STEWART,A.P.MOYER,M.DI PIAZZA,J.G.WHALEN, JRNL AUTH 4 P.J.GREISEN,D.W.CHRISTIANSON,D.BAKER JRNL TITL ANCHOR EXTENSION: A STRUCTURE-GUIDED APPROACH TO DESIGN JRNL TITL 2 CYCLIC PEPTIDES TARGETING ENZYME ACTIVE SITES. JRNL REF NAT COMMUN V. 12 3384 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34099674 JRNL DOI 10.1038/S41467-021-23609-8 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC1_3605 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 183886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 9349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8200 - 4.7900 1.00 6226 334 0.1672 0.1828 REMARK 3 2 4.7900 - 3.8000 1.00 6022 307 0.1282 0.1528 REMARK 3 3 3.8000 - 3.3200 1.00 5971 305 0.1378 0.1730 REMARK 3 4 3.3200 - 3.0200 1.00 5881 370 0.1575 0.1958 REMARK 3 5 3.0200 - 2.8000 1.00 5890 308 0.1600 0.1870 REMARK 3 6 2.8000 - 2.6300 1.00 5860 351 0.1567 0.1907 REMARK 3 7 2.6300 - 2.5000 1.00 5868 338 0.1575 0.1832 REMARK 3 8 2.5000 - 2.3900 1.00 5896 289 0.1608 0.1999 REMARK 3 9 2.3900 - 2.3000 1.00 5863 309 0.1566 0.1856 REMARK 3 10 2.3000 - 2.2200 1.00 5822 340 0.1571 0.1770 REMARK 3 11 2.2200 - 2.1500 1.00 5866 323 0.1616 0.1994 REMARK 3 12 2.1500 - 2.0900 1.00 5859 301 0.1613 0.1808 REMARK 3 13 2.0900 - 2.0400 1.00 5867 268 0.1626 0.1910 REMARK 3 14 2.0400 - 1.9900 1.00 5883 291 0.1650 0.2026 REMARK 3 15 1.9900 - 1.9400 1.00 5869 285 0.1707 0.2025 REMARK 3 16 1.9400 - 1.9000 1.00 5808 318 0.1774 0.2022 REMARK 3 17 1.9000 - 1.8600 1.00 5798 335 0.1808 0.2284 REMARK 3 18 1.8600 - 1.8300 1.00 5831 316 0.1730 0.1881 REMARK 3 19 1.8300 - 1.7900 1.00 5791 304 0.1705 0.2109 REMARK 3 20 1.7900 - 1.7600 1.00 5824 323 0.1691 0.1950 REMARK 3 21 1.7600 - 1.7400 1.00 5814 316 0.1817 0.2206 REMARK 3 22 1.7400 - 1.7100 1.00 5831 292 0.1908 0.2206 REMARK 3 23 1.7100 - 1.6800 1.00 5759 314 0.1970 0.2357 REMARK 3 24 1.6800 - 1.6600 1.00 5875 279 0.2060 0.2689 REMARK 3 25 1.6600 - 1.6400 1.00 5804 292 0.2133 0.2288 REMARK 3 26 1.6400 - 1.6200 1.00 5797 325 0.2229 0.2567 REMARK 3 27 1.6200 - 1.6000 1.00 5806 308 0.2271 0.2619 REMARK 3 28 1.6000 - 1.5800 1.00 5778 332 0.2321 0.2444 REMARK 3 29 1.5800 - 1.5600 1.00 5751 337 0.2503 0.2626 REMARK 3 30 1.5600 - 1.5400 0.80 4627 239 0.2625 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.158 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.604 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 9607 REMARK 3 ANGLE : 1.231 12931 REMARK 3 CHIRALITY : 0.076 1318 REMARK 3 PLANARITY : 0.009 1662 REMARK 3 DIHEDRAL : 19.128 5731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 43.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LXZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG600 AND 100MM CHES PH REMARK 280 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.17450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.49450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.83250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.49450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.17450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.83250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 380 REMARK 465 ALA A 381 REMARK 465 PRO A 382 REMARK 465 GLY A 383 REMARK 465 VAL A 384 REMARK 465 GLN A 385 REMARK 465 MET A 386 REMARK 465 GLN A 387 REMARK 465 ALA A 388 REMARK 465 ILE A 389 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 TYR B 7 REMARK 465 SER B 8 REMARK 465 GLN B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 380 REMARK 465 ALA B 381 REMARK 465 PRO B 382 REMARK 465 GLY B 383 REMARK 465 VAL B 384 REMARK 465 GLN B 385 REMARK 465 MET B 386 REMARK 465 GLN B 387 REMARK 465 ALA B 388 REMARK 465 ILE B 389 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 TYR C 7 REMARK 465 SER C 8 REMARK 465 GLN C 9 REMARK 465 GLY C 10 REMARK 465 GLY C 11 REMARK 465 GLY C 12 REMARK 465 HIS C 380 REMARK 465 ALA C 381 REMARK 465 PRO C 382 REMARK 465 GLY C 383 REMARK 465 VAL C 384 REMARK 465 GLN C 385 REMARK 465 MET C 386 REMARK 465 GLN C 387 REMARK 465 ALA C 388 REMARK 465 ILE C 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 503 CG CD CE NZ REMARK 470 DLY H 505 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 764 O HOH B 809 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 17 CB CYS B 17 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 315 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 72 -51.57 -124.75 REMARK 500 GLU A 103 -101.31 -129.60 REMARK 500 TYR A 226 6.37 80.40 REMARK 500 CYS A 266 40.61 -109.86 REMARK 500 TYR B 72 -54.37 -124.72 REMARK 500 GLU B 103 -102.22 -119.56 REMARK 500 TYR B 226 3.01 84.31 REMARK 500 CYS B 266 40.16 -109.78 REMARK 500 TYR C 72 -53.40 -123.97 REMARK 500 GLU C 103 -107.52 -114.71 REMARK 500 TYR C 226 6.02 81.24 REMARK 500 CYS C 266 41.24 -107.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 O REMARK 620 2 ASP A 179 OD1 73.2 REMARK 620 3 ASP A 181 O 106.4 100.3 REMARK 620 4 HIS A 183 O 159.0 86.4 81.4 REMARK 620 5 SER A 202 OG 88.1 102.4 155.8 91.8 REMARK 620 6 PHE A 203 O 80.5 149.9 73.2 120.5 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD2 REMARK 620 2 HIS A 183 ND1 102.0 REMARK 620 3 ASP A 269 OD2 109.9 101.4 REMARK 620 4 U2M F 500 SH 116.8 115.1 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 192 O REMARK 620 2 THR A 195 O 88.2 REMARK 620 3 VAL A 198 O 124.0 89.2 REMARK 620 4 HOH A 637 O 72.9 158.4 109.8 REMARK 620 5 HOH A 643 O 91.1 96.3 144.8 74.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 O REMARK 620 2 ASP B 179 OD1 73.9 REMARK 620 3 ASP B 181 O 106.6 98.8 REMARK 620 4 HIS B 183 O 157.7 84.4 81.5 REMARK 620 5 SER B 202 OG 87.1 102.6 157.2 92.6 REMARK 620 6 PHE B 203 O 80.6 150.1 73.5 121.7 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 181 OD2 REMARK 620 2 HIS B 183 ND1 103.6 REMARK 620 3 ASP B 269 OD2 109.6 101.4 REMARK 620 4 U2M G 500 SH 118.0 112.4 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 192 O REMARK 620 2 THR B 195 O 88.9 REMARK 620 3 VAL B 198 O 123.6 89.9 REMARK 620 4 HOH B 649 O 74.8 160.9 107.3 REMARK 620 5 HOH B 651 O 93.0 96.9 143.0 74.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 179 O REMARK 620 2 ASP C 179 OD1 72.8 REMARK 620 3 ASP C 181 O 105.1 99.7 REMARK 620 4 HIS C 183 O 159.0 86.9 82.8 REMARK 620 5 SER C 202 OG 87.5 101.6 157.7 91.7 REMARK 620 6 PHE C 203 O 79.9 149.0 73.4 121.1 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 181 OD2 REMARK 620 2 HIS C 183 ND1 101.8 REMARK 620 3 ASP C 269 OD2 109.0 98.1 REMARK 620 4 U2M H 500 SH 118.3 114.9 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE C 192 O REMARK 620 2 THR C 195 O 90.7 REMARK 620 3 VAL C 198 O 124.7 86.2 REMARK 620 4 HOH C 586 O 73.6 161.5 110.7 REMARK 620 5 HOH C 599 O 90.8 96.0 144.5 74.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M F 500 and GLY F REMARK 800 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M F 500 and ASN F REMARK 800 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN F 504 and DLY F REMARK 800 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DLY F 505 and TRP F REMARK 800 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M G 500 and GLY G REMARK 800 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M G 500 and ASN G REMARK 800 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN G 504 and DLY G REMARK 800 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DLY G 505 and TRP G REMARK 800 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M H 500 and ASN H REMARK 800 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide U2M H 500 and GLY H REMARK 800 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN H 504 and DLY H REMARK 800 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DLY H 505 and TRP H REMARK 800 506 DBREF 6WHN A 6 389 UNP Q92769 HDAC2_HUMAN 2 385 DBREF 6WHN B 6 389 UNP Q92769 HDAC2_HUMAN 2 385 DBREF 6WHN C 6 389 UNP Q92769 HDAC2_HUMAN 2 385 DBREF 6WHN F 500 507 PDB 6WHN 6WHN 500 507 DBREF 6WHN G 500 507 PDB 6WHN 6WHN 500 507 DBREF 6WHN H 500 507 PDB 6WHN 6WHN 500 507 SEQADV 6WHN ALA A 5 UNP Q92769 EXPRESSION TAG SEQADV 6WHN ALA B 5 UNP Q92769 EXPRESSION TAG SEQADV 6WHN ALA C 5 UNP Q92769 EXPRESSION TAG SEQRES 1 A 385 ALA ALA TYR SER GLN GLY GLY GLY LYS LYS LYS VAL CYS SEQRES 2 A 385 TYR TYR TYR ASP GLY ASP ILE GLY ASN TYR TYR TYR GLY SEQRES 3 A 385 GLN GLY HIS PRO MET LYS PRO HIS ARG ILE ARG MET THR SEQRES 4 A 385 HIS ASN LEU LEU LEU ASN TYR GLY LEU TYR ARG LYS MET SEQRES 5 A 385 GLU ILE TYR ARG PRO HIS LYS ALA THR ALA GLU GLU MET SEQRES 6 A 385 THR LYS TYR HIS SER ASP GLU TYR ILE LYS PHE LEU ARG SEQRES 7 A 385 SER ILE ARG PRO ASP ASN MET SER GLU TYR SER LYS GLN SEQRES 8 A 385 MET GLN ARG PHE ASN VAL GLY GLU ASP CYS PRO VAL PHE SEQRES 9 A 385 ASP GLY LEU PHE GLU PHE CYS GLN LEU SER THR GLY GLY SEQRES 10 A 385 SER VAL ALA GLY ALA VAL LYS LEU ASN ARG GLN GLN THR SEQRES 11 A 385 ASP MET ALA VAL ASN TRP ALA GLY GLY LEU HIS HIS ALA SEQRES 12 A 385 LYS LYS SER GLU ALA SER GLY PHE CYS TYR VAL ASN ASP SEQRES 13 A 385 ILE VAL LEU ALA ILE LEU GLU LEU LEU LYS TYR HIS GLN SEQRES 14 A 385 ARG VAL LEU TYR ILE ASP ILE ASP ILE HIS HIS GLY ASP SEQRES 15 A 385 GLY VAL GLU GLU ALA PHE TYR THR THR ASP ARG VAL MET SEQRES 16 A 385 THR VAL SER PHE HIS LYS TYR GLY GLU TYR PHE PRO GLY SEQRES 17 A 385 THR GLY ASP LEU ARG ASP ILE GLY ALA GLY LYS GLY LYS SEQRES 18 A 385 TYR TYR ALA VAL ASN PHE PRO MET ARG ASP GLY ILE ASP SEQRES 19 A 385 ASP GLU SER TYR GLY GLN ILE PHE LYS PRO ILE ILE SER SEQRES 20 A 385 LYS VAL MET GLU MET TYR GLN PRO SER ALA VAL VAL LEU SEQRES 21 A 385 GLN CYS GLY ALA ASP SER LEU SER GLY ASP ARG LEU GLY SEQRES 22 A 385 CYS PHE ASN LEU THR VAL LYS GLY HIS ALA LYS CYS VAL SEQRES 23 A 385 GLU VAL VAL LYS THR PHE ASN LEU PRO LEU LEU MET LEU SEQRES 24 A 385 GLY GLY GLY GLY TYR THR ILE ARG ASN VAL ALA ARG CYS SEQRES 25 A 385 TRP THR TYR GLU THR ALA VAL ALA LEU ASP CYS GLU ILE SEQRES 26 A 385 PRO ASN GLU LEU PRO TYR ASN ASP TYR PHE GLU TYR PHE SEQRES 27 A 385 GLY PRO ASP PHE LYS LEU HIS ILE SER PRO SER ASN MET SEQRES 28 A 385 THR ASN GLN ASN THR PRO GLU TYR MET GLU LYS ILE LYS SEQRES 29 A 385 GLN ARG LEU PHE GLU ASN LEU ARG MET LEU PRO HIS ALA SEQRES 30 A 385 PRO GLY VAL GLN MET GLN ALA ILE SEQRES 1 B 385 ALA ALA TYR SER GLN GLY GLY GLY LYS LYS LYS VAL CYS SEQRES 2 B 385 TYR TYR TYR ASP GLY ASP ILE GLY ASN TYR TYR TYR GLY SEQRES 3 B 385 GLN GLY HIS PRO MET LYS PRO HIS ARG ILE ARG MET THR SEQRES 4 B 385 HIS ASN LEU LEU LEU ASN TYR GLY LEU TYR ARG LYS MET SEQRES 5 B 385 GLU ILE TYR ARG PRO HIS LYS ALA THR ALA GLU GLU MET SEQRES 6 B 385 THR LYS TYR HIS SER ASP GLU TYR ILE LYS PHE LEU ARG SEQRES 7 B 385 SER ILE ARG PRO ASP ASN MET SER GLU TYR SER LYS GLN SEQRES 8 B 385 MET GLN ARG PHE ASN VAL GLY GLU ASP CYS PRO VAL PHE SEQRES 9 B 385 ASP GLY LEU PHE GLU PHE CYS GLN LEU SER THR GLY GLY SEQRES 10 B 385 SER VAL ALA GLY ALA VAL LYS LEU ASN ARG GLN GLN THR SEQRES 11 B 385 ASP MET ALA VAL ASN TRP ALA GLY GLY LEU HIS HIS ALA SEQRES 12 B 385 LYS LYS SER GLU ALA SER GLY PHE CYS TYR VAL ASN ASP SEQRES 13 B 385 ILE VAL LEU ALA ILE LEU GLU LEU LEU LYS TYR HIS GLN SEQRES 14 B 385 ARG VAL LEU TYR ILE ASP ILE ASP ILE HIS HIS GLY ASP SEQRES 15 B 385 GLY VAL GLU GLU ALA PHE TYR THR THR ASP ARG VAL MET SEQRES 16 B 385 THR VAL SER PHE HIS LYS TYR GLY GLU TYR PHE PRO GLY SEQRES 17 B 385 THR GLY ASP LEU ARG ASP ILE GLY ALA GLY LYS GLY LYS SEQRES 18 B 385 TYR TYR ALA VAL ASN PHE PRO MET ARG ASP GLY ILE ASP SEQRES 19 B 385 ASP GLU SER TYR GLY GLN ILE PHE LYS PRO ILE ILE SER SEQRES 20 B 385 LYS VAL MET GLU MET TYR GLN PRO SER ALA VAL VAL LEU SEQRES 21 B 385 GLN CYS GLY ALA ASP SER LEU SER GLY ASP ARG LEU GLY SEQRES 22 B 385 CYS PHE ASN LEU THR VAL LYS GLY HIS ALA LYS CYS VAL SEQRES 23 B 385 GLU VAL VAL LYS THR PHE ASN LEU PRO LEU LEU MET LEU SEQRES 24 B 385 GLY GLY GLY GLY TYR THR ILE ARG ASN VAL ALA ARG CYS SEQRES 25 B 385 TRP THR TYR GLU THR ALA VAL ALA LEU ASP CYS GLU ILE SEQRES 26 B 385 PRO ASN GLU LEU PRO TYR ASN ASP TYR PHE GLU TYR PHE SEQRES 27 B 385 GLY PRO ASP PHE LYS LEU HIS ILE SER PRO SER ASN MET SEQRES 28 B 385 THR ASN GLN ASN THR PRO GLU TYR MET GLU LYS ILE LYS SEQRES 29 B 385 GLN ARG LEU PHE GLU ASN LEU ARG MET LEU PRO HIS ALA SEQRES 30 B 385 PRO GLY VAL GLN MET GLN ALA ILE SEQRES 1 C 385 ALA ALA TYR SER GLN GLY GLY GLY LYS LYS LYS VAL CYS SEQRES 2 C 385 TYR TYR TYR ASP GLY ASP ILE GLY ASN TYR TYR TYR GLY SEQRES 3 C 385 GLN GLY HIS PRO MET LYS PRO HIS ARG ILE ARG MET THR SEQRES 4 C 385 HIS ASN LEU LEU LEU ASN TYR GLY LEU TYR ARG LYS MET SEQRES 5 C 385 GLU ILE TYR ARG PRO HIS LYS ALA THR ALA GLU GLU MET SEQRES 6 C 385 THR LYS TYR HIS SER ASP GLU TYR ILE LYS PHE LEU ARG SEQRES 7 C 385 SER ILE ARG PRO ASP ASN MET SER GLU TYR SER LYS GLN SEQRES 8 C 385 MET GLN ARG PHE ASN VAL GLY GLU ASP CYS PRO VAL PHE SEQRES 9 C 385 ASP GLY LEU PHE GLU PHE CYS GLN LEU SER THR GLY GLY SEQRES 10 C 385 SER VAL ALA GLY ALA VAL LYS LEU ASN ARG GLN GLN THR SEQRES 11 C 385 ASP MET ALA VAL ASN TRP ALA GLY GLY LEU HIS HIS ALA SEQRES 12 C 385 LYS LYS SER GLU ALA SER GLY PHE CYS TYR VAL ASN ASP SEQRES 13 C 385 ILE VAL LEU ALA ILE LEU GLU LEU LEU LYS TYR HIS GLN SEQRES 14 C 385 ARG VAL LEU TYR ILE ASP ILE ASP ILE HIS HIS GLY ASP SEQRES 15 C 385 GLY VAL GLU GLU ALA PHE TYR THR THR ASP ARG VAL MET SEQRES 16 C 385 THR VAL SER PHE HIS LYS TYR GLY GLU TYR PHE PRO GLY SEQRES 17 C 385 THR GLY ASP LEU ARG ASP ILE GLY ALA GLY LYS GLY LYS SEQRES 18 C 385 TYR TYR ALA VAL ASN PHE PRO MET ARG ASP GLY ILE ASP SEQRES 19 C 385 ASP GLU SER TYR GLY GLN ILE PHE LYS PRO ILE ILE SER SEQRES 20 C 385 LYS VAL MET GLU MET TYR GLN PRO SER ALA VAL VAL LEU SEQRES 21 C 385 GLN CYS GLY ALA ASP SER LEU SER GLY ASP ARG LEU GLY SEQRES 22 C 385 CYS PHE ASN LEU THR VAL LYS GLY HIS ALA LYS CYS VAL SEQRES 23 C 385 GLU VAL VAL LYS THR PHE ASN LEU PRO LEU LEU MET LEU SEQRES 24 C 385 GLY GLY GLY GLY TYR THR ILE ARG ASN VAL ALA ARG CYS SEQRES 25 C 385 TRP THR TYR GLU THR ALA VAL ALA LEU ASP CYS GLU ILE SEQRES 26 C 385 PRO ASN GLU LEU PRO TYR ASN ASP TYR PHE GLU TYR PHE SEQRES 27 C 385 GLY PRO ASP PHE LYS LEU HIS ILE SER PRO SER ASN MET SEQRES 28 C 385 THR ASN GLN ASN THR PRO GLU TYR MET GLU LYS ILE LYS SEQRES 29 C 385 GLN ARG LEU PHE GLU ASN LEU ARG MET LEU PRO HIS ALA SEQRES 30 C 385 PRO GLY VAL GLN MET GLN ALA ILE SEQRES 1 F 8 U2M ASN PRO LYS GLN DLY TRP GLY SEQRES 1 G 8 U2M ASN PRO LYS GLN DLY TRP GLY SEQRES 1 H 8 U2M ASN PRO LYS GLN DLY TRP GLY HET U2M F 500 10 HET DLY F 505 9 HET U2M G 500 10 HET DLY G 505 9 HET U2M H 500 10 HET DLY H 505 5 HET ZN A 401 1 HET NA A 402 1 HET NA A 403 1 HET NHE A 404 13 HET PG4 A 405 13 HET PG4 A 406 13 HET PG4 A 407 13 HET PGE A 408 10 HET PEG A 409 7 HET ZN B 401 1 HET NA B 402 1 HET NA B 403 1 HET NHE B 404 13 HET PGE B 405 10 HET PG4 B 406 13 HET PGE B 407 10 HET ZN C 401 1 HET NA C 402 1 HET NA C 403 1 HET PGE C 404 10 HET PG4 C 405 13 HET PGE C 406 10 HETNAM U2M (2S)-2-AMINO-7-SULFANYLHEPTANOIC ACID HETNAM DLY D-LYSINE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 4 U2M 3(C7 H15 N O2 S) FORMUL 4 DLY 3(C6 H14 N2 O2) FORMUL 7 ZN 3(ZN 2+) FORMUL 8 NA 6(NA 1+) FORMUL 10 NHE 2(C8 H17 N O3 S) FORMUL 11 PG4 5(C8 H18 O5) FORMUL 14 PGE 5(C6 H14 O4) FORMUL 15 PEG C4 H10 O3 FORMUL 29 HOH *968(H2 O) HELIX 1 AA1 ASP A 23 TYR A 27 5 5 HELIX 2 AA2 PRO A 37 TYR A 50 1 14 HELIX 3 AA3 GLY A 51 MET A 56 5 6 HELIX 4 AA4 THR A 65 THR A 70 1 6 HELIX 5 AA5 SER A 74 ILE A 84 1 11 HELIX 6 AA6 ASN A 88 GLU A 91 5 4 HELIX 7 AA7 TYR A 92 ASN A 100 1 9 HELIX 8 AA8 GLY A 110 ARG A 131 1 22 HELIX 9 AA9 ASN A 159 LYS A 170 1 12 HELIX 10 AB1 GLY A 185 PHE A 192 1 8 HELIX 11 AB2 ALA A 221 LYS A 225 5 5 HELIX 12 AB3 ASP A 238 GLN A 258 1 21 HELIX 13 AB4 GLY A 267 LEU A 271 5 5 HELIX 14 AB5 THR A 282 THR A 295 1 14 HELIX 15 AB6 THR A 309 ASP A 326 1 18 HELIX 16 AB7 TYR A 338 GLY A 343 5 6 HELIX 17 AB8 THR A 360 ARG A 376 1 17 HELIX 18 AB9 ASP B 23 TYR B 27 5 5 HELIX 19 AC1 PRO B 37 TYR B 50 1 14 HELIX 20 AC2 GLY B 51 MET B 56 5 6 HELIX 21 AC3 THR B 65 THR B 70 1 6 HELIX 22 AC4 SER B 74 ILE B 84 1 11 HELIX 23 AC5 ARG B 85 GLU B 91 5 7 HELIX 24 AC6 TYR B 92 ASN B 100 1 9 HELIX 25 AC7 GLY B 110 ARG B 131 1 22 HELIX 26 AC8 ASN B 159 LEU B 169 1 11 HELIX 27 AC9 GLY B 185 PHE B 192 1 8 HELIX 28 AD1 ALA B 221 LYS B 225 5 5 HELIX 29 AD2 ASP B 238 GLN B 258 1 21 HELIX 30 AD3 GLY B 267 LEU B 271 5 5 HELIX 31 AD4 THR B 282 THR B 295 1 14 HELIX 32 AD5 THR B 309 LEU B 325 1 17 HELIX 33 AD6 TYR B 338 GLY B 343 5 6 HELIX 34 AD7 THR B 360 ARG B 376 1 17 HELIX 35 AD8 ASP C 23 TYR C 27 5 5 HELIX 36 AD9 PRO C 37 TYR C 50 1 14 HELIX 37 AE1 GLY C 51 MET C 56 5 6 HELIX 38 AE2 THR C 65 THR C 70 1 6 HELIX 39 AE3 SER C 74 ILE C 84 1 11 HELIX 40 AE4 ARG C 85 GLU C 91 5 7 HELIX 41 AE5 TYR C 92 ASN C 100 1 9 HELIX 42 AE6 GLY C 110 ARG C 131 1 22 HELIX 43 AE7 ASN C 159 LEU C 169 1 11 HELIX 44 AE8 GLY C 185 PHE C 192 1 8 HELIX 45 AE9 ALA C 221 LYS C 225 5 5 HELIX 46 AF1 ASP C 238 GLN C 258 1 21 HELIX 47 AF2 GLY C 267 LEU C 271 5 5 HELIX 48 AF3 THR C 282 THR C 295 1 14 HELIX 49 AF4 THR C 309 LEU C 325 1 17 HELIX 50 AF5 TYR C 338 GLY C 343 5 6 HELIX 51 AF6 THR C 360 ARG C 376 1 17 HELIX 52 AF7 ASN G 501 DLY G 505 5 5 HELIX 53 AF8 ASN H 501 DLY H 505 5 5 SHEET 1 AA1 8 GLU A 57 TYR A 59 0 SHEET 2 AA1 8 VAL A 16 TYR A 19 1 N TYR A 18 O TYR A 59 SHEET 3 AA1 8 MET A 136 ASN A 139 1 O VAL A 138 N TYR A 19 SHEET 4 AA1 8 LEU A 300 LEU A 303 1 O MET A 302 N ALA A 137 SHEET 5 AA1 8 ALA A 261 GLN A 265 1 N LEU A 264 O LEU A 301 SHEET 6 AA1 8 VAL A 175 ASP A 179 1 N ILE A 178 O GLN A 265 SHEET 7 AA1 8 VAL A 198 LYS A 205 1 O MET A 199 N TYR A 177 SHEET 8 AA1 8 ALA A 228 MET A 233 1 O VAL A 229 N THR A 200 SHEET 1 AA2 8 GLU B 57 TYR B 59 0 SHEET 2 AA2 8 VAL B 16 TYR B 19 1 N TYR B 18 O TYR B 59 SHEET 3 AA2 8 MET B 136 ASN B 139 1 O VAL B 138 N TYR B 19 SHEET 4 AA2 8 LEU B 300 LEU B 303 1 O MET B 302 N ALA B 137 SHEET 5 AA2 8 ALA B 261 GLN B 265 1 N LEU B 264 O LEU B 301 SHEET 6 AA2 8 VAL B 175 ASP B 179 1 N ILE B 178 O GLN B 265 SHEET 7 AA2 8 VAL B 198 LYS B 205 1 O MET B 199 N TYR B 177 SHEET 8 AA2 8 ALA B 228 MET B 233 1 O VAL B 229 N THR B 200 SHEET 1 AA3 8 GLU C 57 TYR C 59 0 SHEET 2 AA3 8 VAL C 16 TYR C 19 1 N TYR C 18 O TYR C 59 SHEET 3 AA3 8 MET C 136 ASN C 139 1 O VAL C 138 N TYR C 19 SHEET 4 AA3 8 LEU C 300 LEU C 303 1 O MET C 302 N ALA C 137 SHEET 5 AA3 8 ALA C 261 GLN C 265 1 N LEU C 264 O LEU C 301 SHEET 6 AA3 8 VAL C 175 ASP C 179 1 N ILE C 178 O GLN C 265 SHEET 7 AA3 8 VAL C 198 LYS C 205 1 O MET C 199 N TYR C 177 SHEET 8 AA3 8 ALA C 228 MET C 233 1 O VAL C 229 N THR C 200 LINK C U2M F 500 N ASN F 501 1555 1555 1.33 LINK N U2M F 500 C GLY F 507 1555 1555 1.35 LINK C GLN F 504 N DLY F 505 1555 1555 1.33 LINK C DLY F 505 N TRP F 506 1555 1555 1.33 LINK C U2M G 500 N ASN G 501 1555 1555 1.33 LINK N U2M G 500 C GLY G 507 1555 1555 1.35 LINK C GLN G 504 N DLY G 505 1555 1555 1.33 LINK C DLY G 505 N TRP G 506 1555 1555 1.33 LINK C U2M H 500 N ASN H 501 1555 1555 1.33 LINK N U2M H 500 C GLY H 507 1555 1555 1.34 LINK C GLN H 504 N DLY H 505 1555 1555 1.34 LINK C DLY H 505 N TRP H 506 1555 1555 1.33 LINK O ASP A 179 NA NA A 402 1555 1555 2.81 LINK OD1 ASP A 179 NA NA A 402 1555 1555 2.45 LINK OD2 ASP A 181 ZN ZN A 401 1555 1555 1.99 LINK O ASP A 181 NA NA A 402 1555 1555 2.53 LINK ND1 HIS A 183 ZN ZN A 401 1555 1555 2.03 LINK O HIS A 183 NA NA A 402 1555 1555 2.80 LINK O PHE A 192 NA NA A 403 1555 1555 2.32 LINK O THR A 195 NA NA A 403 1555 1555 2.56 LINK O VAL A 198 NA NA A 403 1555 1555 2.32 LINK OG SER A 202 NA NA A 402 1555 1555 2.87 LINK O PHE A 203 NA NA A 402 1555 1555 2.49 LINK OD2 ASP A 269 ZN ZN A 401 1555 1555 1.93 LINK ZN ZN A 401 SH U2M F 500 1555 1555 2.27 LINK NA NA A 403 O HOH A 637 1555 1555 2.99 LINK NA NA A 403 O HOH A 643 1555 1555 2.35 LINK O ASP B 179 NA NA B 402 1555 1555 2.82 LINK OD1 ASP B 179 NA NA B 402 1555 1555 2.50 LINK OD2 ASP B 181 ZN ZN B 401 1555 1555 1.94 LINK O ASP B 181 NA NA B 402 1555 1555 2.48 LINK ND1 HIS B 183 ZN ZN B 401 1555 1555 2.04 LINK O HIS B 183 NA NA B 402 1555 1555 2.82 LINK O PHE B 192 NA NA B 403 1555 1555 2.33 LINK O THR B 195 NA NA B 403 1555 1555 2.49 LINK O VAL B 198 NA NA B 403 1555 1555 2.36 LINK OG SER B 202 NA NA B 402 1555 1555 2.87 LINK O PHE B 203 NA NA B 402 1555 1555 2.49 LINK OD2 ASP B 269 ZN ZN B 401 1555 1555 2.00 LINK ZN ZN B 401 SH U2M G 500 1555 1555 2.28 LINK NA NA B 403 O HOH B 649 1555 1555 2.88 LINK NA NA B 403 O HOH B 651 1555 1555 2.38 LINK O ASP C 179 NA NA C 402 1555 1555 2.82 LINK OD1 ASP C 179 NA NA C 402 1555 1555 2.50 LINK OD2 ASP C 181 ZN ZN C 401 1555 1555 2.02 LINK O ASP C 181 NA NA C 402 1555 1555 2.47 LINK ND1 HIS C 183 ZN ZN C 401 1555 1555 2.07 LINK O HIS C 183 NA NA C 402 1555 1555 2.75 LINK O PHE C 192 NA NA C 403 1555 1555 2.32 LINK O THR C 195 NA NA C 403 1555 1555 2.51 LINK O VAL C 198 NA NA C 403 1555 1555 2.31 LINK OG SER C 202 NA NA C 402 1555 1555 2.86 LINK O PHE C 203 NA NA C 402 1555 1555 2.48 LINK OD2 ASP C 269 ZN ZN C 401 1555 1555 2.00 LINK ZN ZN C 401 SH U2M H 500 1555 1555 2.23 LINK NA NA C 403 O HOH C 586 1555 1555 3.02 LINK NA NA C 403 O HOH C 599 1555 1555 2.39 CISPEP 1 PHE A 210 PRO A 211 0 1.60 CISPEP 2 GLY A 343 PRO A 344 0 3.45 CISPEP 3 PHE B 210 PRO B 211 0 -1.74 CISPEP 4 GLY B 343 PRO B 344 0 8.26 CISPEP 5 PHE C 210 PRO C 211 0 -3.49 CISPEP 6 GLY C 343 PRO C 344 0 -1.37 SITE 1 AC1 4 ASP A 181 HIS A 183 ASP A 269 U2M F 500 SITE 1 AC2 5 ASP A 179 ASP A 181 HIS A 183 SER A 202 SITE 2 AC2 5 PHE A 203 SITE 1 AC3 6 PHE A 192 THR A 195 VAL A 198 TYR A 227 SITE 2 AC3 6 HOH A 637 HOH A 643 SITE 1 AC4 10 LYS A 14 ASN A 100 ASP A 104 SER A 153 SITE 2 AC4 10 GLY A 154 PHE A 210 HOH A 509 HOH A 538 SITE 3 AC4 10 TRP F 506 GLY F 507 SITE 1 AC5 3 LYS A 71 ALA A 191 THR A 195 SITE 1 AC6 6 GLU A 340 TYR A 341 GLY A 343 HOH A 504 SITE 2 AC6 6 HOH A 511 HOH A 720 SITE 1 AC7 6 ASP A 23 ASN A 26 TYR A 27 GLY A 110 SITE 2 AC7 6 HOH A 581 HOH A 594 SITE 1 AC8 6 ARG A 131 ASP B 23 ASN B 26 TYR B 27 SITE 2 AC8 6 ASP B 109 HOH B 776 SITE 1 AC9 1 HIS A 38 SITE 1 AD1 4 ASP B 181 HIS B 183 ASP B 269 U2M G 500 SITE 1 AD2 5 ASP B 179 ASP B 181 HIS B 183 SER B 202 SITE 2 AD2 5 PHE B 203 SITE 1 AD3 6 PHE B 192 THR B 195 VAL B 198 TYR B 227 SITE 2 AD3 6 HOH B 649 HOH B 651 SITE 1 AD4 9 TYR A 59 LYS A 128 HOH A 590 ASP B 21 SITE 2 AD4 9 ASP B 23 TYR B 27 ARG B 60 LYS B 63 SITE 3 AD4 9 HOH B 610 SITE 1 AD5 6 HOH A 512 ARG B 311 GLU B 340 TYR B 341 SITE 2 AD5 6 GLY B 343 HOH B 555 SITE 1 AD6 3 LYS B 284 GLU C 67 THR C 70 SITE 1 AD7 6 LYS B 71 LEU B 166 ALA B 191 HOH B 734 SITE 2 AD7 6 HOH B 788 GLU C 91 SITE 1 AD8 4 ASP C 181 HIS C 183 ASP C 269 U2M H 500 SITE 1 AD9 5 ASP C 179 ASP C 181 HIS C 183 SER C 202 SITE 2 AD9 5 PHE C 203 SITE 1 AE1 6 PHE C 192 THR C 195 VAL C 198 TYR C 227 SITE 2 AE1 6 HOH C 586 HOH C 599 SITE 1 AE2 6 ASP B 345 ALA C 191 ARG C 197 HOH C 543 SITE 2 AE2 6 HOH C 597 HOH C 630 SITE 1 AE3 6 ASN B 354 LEU C 169 LYS C 170 TYR C 171 SITE 2 AE3 6 GLN C 173 ARG C 197 SITE 1 AE4 6 ASP C 23 ASN C 26 TYR C 27 ASP C 109 SITE 2 AE4 6 HOH C 522 HOH C 638 SITE 1 AE5 21 ASP A 104 HIS A 145 HIS A 146 GLY A 154 SITE 2 AE5 21 PHE A 155 ASP A 181 HIS A 183 PHE A 210 SITE 3 AE5 21 ASP A 269 LEU A 276 GLY A 306 TYR A 308 SITE 4 AE5 21 ZN A 401 NHE A 404 HOH A 509 ASN F 501 SITE 5 AE5 21 PRO F 502 DLY F 505 TRP F 506 HOH F 601 SITE 6 AE5 21 HOH F 602 SITE 1 AE6 22 TYR A 7 HIS A 145 HIS A 146 GLY A 154 SITE 2 AE6 22 PHE A 155 ASP A 181 HIS A 183 PHE A 210 SITE 3 AE6 22 ASP A 269 LEU A 276 GLY A 306 TYR A 308 SITE 4 AE6 22 ZN A 401 HOH A 509 HOH A 682 PRO F 502 SITE 5 AE6 22 LYS F 503 GLN F 504 GLY F 507 HOH F 601 SITE 6 AE6 22 HOH F 602 HOH F 603 SITE 1 AE7 11 ALA A 5 GLU A 103 ASP A 135 ASN A 297 SITE 2 AE7 11 ASN F 501 PRO F 502 LYS F 503 TRP F 506 SITE 3 AE7 11 GLY F 507 HOH F 601 HOH F 606 SITE 1 AE8 13 LYS A 15 GLN A 132 GLN A 133 THR A 134 SITE 2 AE8 13 ASP A 135 ASN A 297 NHE A 404 HOH A 641 SITE 3 AE8 13 GLN F 504 GLY F 507 HOH F 604 HOH F 605 SITE 4 AE8 13 HOH F 606 SITE 1 AE9 16 HIS B 145 HIS B 146 GLY B 154 PHE B 155 SITE 2 AE9 16 ASP B 181 HIS B 183 PHE B 210 ASP B 269 SITE 3 AE9 16 TYR B 308 ZN B 401 ASN G 501 PRO G 502 SITE 4 AE9 16 TRP G 506 HOH G 602 HOH G 603 HOH G 604 SITE 1 AF1 20 HIS B 145 HIS B 146 GLY B 154 PHE B 155 SITE 2 AF1 20 ASP B 181 HIS B 183 PHE B 210 ASP B 269 SITE 3 AF1 20 LEU B 276 TYR B 308 ZN B 401 PRO G 502 SITE 4 AF1 20 LYS G 503 GLN G 504 DLY G 505 TRP G 506 SITE 5 AF1 20 GLY G 507 HOH G 601 HOH G 602 HOH G 604 SITE 1 AF2 7 LYS B 13 GLY B 32 PRO B 34 ASN G 501 SITE 2 AF2 7 PRO G 502 LYS G 503 TRP G 506 SITE 1 AF3 10 LYS B 13 HIS B 33 GLU B 103 ASP B 104 SITE 2 AF3 10 U2M G 500 ASN G 501 PRO G 502 LYS G 503 SITE 3 AF3 10 GLN G 504 GLY G 507 SITE 1 AF4 18 ASP C 104 HIS C 145 HIS C 146 GLY C 154 SITE 2 AF4 18 PHE C 155 ASP C 181 HIS C 183 ASP C 269 SITE 3 AF4 18 LEU C 276 GLY C 306 TYR C 308 ZN C 401 SITE 4 AF4 18 PRO H 502 LYS H 503 GLN H 504 TRP H 506 SITE 5 AF4 18 GLY H 507 HOH H 601 SITE 1 AF5 17 ASP C 104 HIS C 145 HIS C 146 GLY C 154 SITE 2 AF5 17 PHE C 155 ASP C 181 HIS C 183 PHE C 210 SITE 3 AF5 17 ASP C 269 GLY C 306 TYR C 308 ZN C 401 SITE 4 AF5 17 ASN H 501 PRO H 502 TRP H 506 HOH H 601 SITE 5 AF5 17 HOH H 602 SITE 1 AF6 7 GLY C 32 ARG C 275 PRO C 379 ASN H 501 SITE 2 AF6 7 PRO H 502 LYS H 503 TRP H 506 SITE 1 AF7 10 HIS C 33 GLU C 103 ASP C 104 PRO C 379 SITE 2 AF7 10 U2M H 500 ASN H 501 PRO H 502 LYS H 503 SITE 3 AF7 10 GLN H 504 GLY H 507 CRYST1 92.349 97.665 138.989 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010828 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007195 0.00000