HEADER TRANSFERASE 08-APR-20 6WHP TITLE STRUCTURE OF CHOLINE KINASE FROM CRYPTOCOCCUS NEOFORMANS VAR. GRUBII TITLE 2 SEROTYPE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRNEC.00459.A.B2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A SOURCE 3 (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487); SOURCE 4 ORGANISM_TAXID: 235443; SOURCE 5 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 6 ATCC: 208821; SOURCE 7 GENE: CNAG_04408; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: CRNEC.00459.A.B2 KEYWDS SSGCID, CHOLINE KINASE, CRYPTOCOCCUS NEOFORMANS, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 6WHP 1 REMARK REVDAT 2 06-MAR-24 6WHP 1 REMARK REVDAT 1 22-APR-20 6WHP 0 JRNL AUTH J.ABENDROTH,S.L.DELKER,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL STRUCTURE OF CHOLINE KINASE FROM CRYPTOCOCCUS NEOFORMANS JRNL TITL 2 VAR. GRUBII SEROTYPE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC4 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 23835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9800 - 5.2900 0.93 1698 156 0.1630 0.1856 REMARK 3 2 5.2900 - 4.2000 0.95 1706 110 0.1399 0.1856 REMARK 3 3 4.2000 - 3.6700 0.96 1678 150 0.1553 0.1838 REMARK 3 4 3.6700 - 3.3300 0.96 1679 161 0.1843 0.2399 REMARK 3 5 3.3300 - 3.0900 0.96 1683 138 0.2024 0.2437 REMARK 3 6 3.0900 - 2.9100 0.97 1673 166 0.2148 0.2852 REMARK 3 7 2.9100 - 2.7700 0.97 1667 148 0.2241 0.2499 REMARK 3 8 2.7700 - 2.6500 0.97 1685 138 0.2212 0.2902 REMARK 3 9 2.6500 - 2.5400 0.98 1684 158 0.2199 0.3048 REMARK 3 10 2.5400 - 2.4600 0.98 1737 105 0.2117 0.2373 REMARK 3 11 2.4600 - 2.3800 0.98 1696 150 0.2169 0.2722 REMARK 3 12 2.3800 - 2.3100 0.98 1717 114 0.2173 0.2935 REMARK 3 13 2.3100 - 2.2500 0.98 1679 159 0.2275 0.2634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.267 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3482 REMARK 3 ANGLE : 0.832 4767 REMARK 3 CHIRALITY : 0.051 519 REMARK 3 PLANARITY : 0.007 629 REMARK 3 DIHEDRAL : 17.647 1247 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0685 28.7035 63.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.3577 T22: 0.2812 REMARK 3 T33: 0.3475 T12: -0.0355 REMARK 3 T13: -0.0239 T23: 0.1130 REMARK 3 L TENSOR REMARK 3 L11: 1.6800 L22: 1.4606 REMARK 3 L33: 2.8929 L12: 0.4305 REMARK 3 L13: 0.2269 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.1442 S13: -0.1467 REMARK 3 S21: -0.0066 S22: -0.0513 S23: -0.1200 REMARK 3 S31: 0.4033 S32: -0.2816 S33: 0.0803 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2607 44.2673 86.4390 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.3580 REMARK 3 T33: 0.3435 T12: -0.0292 REMARK 3 T13: -0.1001 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.0343 L22: 1.5873 REMARK 3 L33: 3.6450 L12: 0.3388 REMARK 3 L13: -0.7313 L23: -0.8882 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: -0.4281 S13: 0.1884 REMARK 3 S21: 0.2619 S22: -0.0773 S23: -0.1751 REMARK 3 S31: -0.4631 S32: 0.1444 S33: 0.1711 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.429 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: TOP 10 HITS FROM HHPRED SEARCH: 3MES_B, 3FEG_A, REMARK 200 5FTG_A, 3C5I_D, 4DA5_A, 1NW1_A, 2QG7_D, 4R78_A, 3DXQ_A, 2PPQ_A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTIC/ANATRACE MCSG-1 SCREEN, REMARK 280 CONDITION D7: 100MM SODIUM CITRATE TRIBASIC / CITRIC ACID PH 5.5, REMARK 280 20% (W/V) PEG 3350: CRNEC.00459.A.B2.PW38290 AT 21.6MG/ML: CRYO: REMARK 280 20% EG: TRAY: 293589D7, PUCK HEK5-8, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 64.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.38343 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.33667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 64.75000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.38343 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.33667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 64.75000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.38343 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.33667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 64.75000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.38343 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.33667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 64.75000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.38343 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.33667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 64.75000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.38343 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.33667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.76686 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 106.67333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 74.76686 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 106.67333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 74.76686 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 106.67333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 74.76686 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.67333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 74.76686 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 106.67333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 74.76686 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 106.67333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.76686 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.67333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 79 REMARK 465 ALA A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 HIS A 83 REMARK 465 HIS A 84 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 GLY A 87 REMARK 465 SER A 197 REMARK 465 ASP A 198 REMARK 465 ALA A 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 200 CG CD1 CD2 REMARK 470 SER A 204 OG REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 LEU A 518 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 491 O HOH A 701 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 120 -50.41 75.42 REMARK 500 LEU A 140 -64.96 -107.68 REMARK 500 THR A 165 114.26 -37.06 REMARK 500 SER A 238 176.46 179.52 REMARK 500 SER A 315 60.21 28.50 REMARK 500 ASP A 346 48.42 -156.62 REMARK 500 ASN A 362 -13.06 80.27 REMARK 500 ASP A 373 94.19 68.18 REMARK 500 ALA A 395 153.23 72.52 REMARK 500 TYR A 397 -75.63 -93.09 REMARK 500 HIS A 409 65.89 64.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CRNEC.00559.A RELATED DB: TARGETTRACK DBREF 6WHP A 87 518 UNP J9VWY8 J9VWY8_CRYNH 88 519 SEQADV 6WHP MET A 79 UNP J9VWY8 INITIATING METHIONINE SEQADV 6WHP ALA A 80 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 81 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 82 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 83 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 84 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 85 UNP J9VWY8 EXPRESSION TAG SEQADV 6WHP HIS A 86 UNP J9VWY8 EXPRESSION TAG SEQRES 1 A 440 MET ALA HIS HIS HIS HIS HIS HIS GLY VAL ARG HIS VAL SEQRES 2 A 440 ALA LEU SER VAL ASP ALA SER GLU TRP ARG GLN PRO VAL SEQRES 3 A 440 PHE LYS GLN LYS VAL LEU ALA ILE LEU ARG ARG LEU HIS SEQRES 4 A 440 VAL PRO ARG TRP SER SER PRO LEU LEU THR PRO THR ASN SEQRES 5 A 440 ILE HIS LEU GLN LYS VAL SER GLY ALA LEU THR ASN ALA SEQRES 6 A 440 VAL PHE PHE VAL SER PHE ASN PRO ALA PRO ASN PRO THR SEQRES 7 A 440 SER PRO SER GLU SER PRO LEU LEU THR PRO THR ILE PRO SEQRES 8 A 440 PRO SER ASP PRO SER HIS PRO PRO PRO LEU THR PRO GLU SEQRES 9 A 440 GLN TYR PRO HIS THR LEU LEU PHE ARG VAL TYR GLY PRO SEQRES 10 A 440 SER SER ASP ALA LEU ILE SER ARG SER GLU GLU LEU ARG SEQRES 11 A 440 ILE LEU HIS VAL LEU SER THR GLN TYR GLY ILE GLY PRO SEQRES 12 A 440 ARG VAL PHE GLY THR PHE THR ASN GLY ARG VAL GLU GLU SEQRES 13 A 440 PHE PHE PRO SER ARG ALA LEU THR ALA GLN GLU LEU ARG SEQRES 14 A 440 ASP PRO ILE ILE SER ARG GLY ILE ALA ARG ARG MET ARG SEQRES 15 A 440 GLU LEU HIS SER VAL ASP LEU ARG ARG LEU GLY TYR GLU SEQRES 16 A 440 GLN GLY ARG ALA THR GLU PRO ALA LEU TRP ILE CYS LEU SEQRES 17 A 440 LYS GLU TRP SER GLU ALA ALA GLU ASP VAL ILE SER SER SEQRES 18 A 440 LEU THR ALA LEU GLY GLY THR LEU GLU ALA TRP VAL GLU SEQRES 19 A 440 ARG PHE SER LEU HIS ARG ILE ARG GLU GLU VAL THR ILE SEQRES 20 A 440 TYR ARG ASN PHE VAL GLU SER GLN SER GLY LYS GLY ASN SEQRES 21 A 440 GLY VAL VAL PHE ALA HIS ASN ASP THR GLN TYR GLY ASN SEQRES 22 A 440 LEU LEU ARG LEU ASP VAL GLU LEU PRO PRO ASN THR PRO SEQRES 23 A 440 GLU HIS CYS ARG TYR ILE VAL ILE ASP PHE GLU TYR ALA SEQRES 24 A 440 SER PRO ASN PRO ARG GLY TYR ASP ILE ALA ASN HIS PHE SEQRES 25 A 440 HIS GLU TRP ARG ALA ASN TYR HIS HIS PRO THR HIS SER SEQRES 26 A 440 HIS SER LEU ILE PRO HIS PHE PRO TYR PRO THR PRO ILE SEQRES 27 A 440 GLN ARG GLU ASP PHE TYR ARG SER TYR LEU SER VAL GLU SEQRES 28 A 440 VAL ASP GLY ARG ASN GLY GLU GLU VAL VAL GLY LYS ARG SEQRES 29 A 440 LYS ASP VAL PRO ALA ASP LYS VAL ALA ALA LEU GLU HIS SEQRES 30 A 440 GLU VAL ARG ILE TRP SER PRO GLY CYS SER ILE ASN TRP SEQRES 31 A 440 ALA LEU TRP GLY LEU VAL GLN ALA GLU GLU GLN VAL CYS SEQRES 32 A 440 ALA LEU ALA THR LYS LYS GLU GLY TYR VAL PRO GLU PHE SEQRES 33 A 440 ASP TYR LEU SER TYR ALA ALA GLU ARG LEU GLU MET PHE SEQRES 34 A 440 ARG ASP GLU ALA LYS LYS LEU GLY VAL PRO LEU HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET CL A 604 1 HET CL A 605 1 HET CL A 606 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *126(H2 O) HELIX 1 AA1 ASP A 96 TRP A 100 5 5 HELIX 2 AA2 GLN A 102 LEU A 116 1 15 HELIX 3 AA3 THR A 127 THR A 129 5 3 HELIX 4 AA4 THR A 180 TYR A 184 5 5 HELIX 5 AA5 SER A 202 GLY A 218 1 17 HELIX 6 AA6 ALA A 243 ARG A 247 5 5 HELIX 7 AA7 ASP A 248 SER A 264 1 17 HELIX 8 AA8 VAL A 265 GLY A 271 5 7 HELIX 9 AA9 GLN A 274 THR A 278 5 5 HELIX 10 AB1 PRO A 280 GLY A 304 1 25 HELIX 11 AB2 GLY A 304 PHE A 314 1 11 HELIX 12 AB3 SER A 315 HIS A 317 5 3 HELIX 13 AB4 ARG A 318 SER A 332 1 15 HELIX 14 AB5 GLN A 348 GLY A 350 5 3 HELIX 15 AB6 PRO A 364 CYS A 367 5 4 HELIX 16 AB7 PRO A 381 TRP A 393 1 13 HELIX 17 AB8 THR A 414 SER A 427 1 14 HELIX 18 AB9 LYS A 441 VAL A 445 5 5 HELIX 19 AC1 PRO A 446 ALA A 476 1 31 HELIX 20 AC2 ALA A 476 LYS A 486 1 11 HELIX 21 AC3 ASP A 495 GLY A 515 1 21 SHEET 1 AA1 7 HIS A 90 VAL A 91 0 SHEET 2 AA1 7 VAL A 223 PHE A 227 1 O THR A 226 N VAL A 91 SHEET 3 AA1 7 GLY A 230 GLU A 234 -1 O VAL A 232 N GLY A 225 SHEET 4 AA1 7 LEU A 188 VAL A 192 -1 N LEU A 189 O GLU A 233 SHEET 5 AA1 7 ALA A 143 PHE A 149 -1 N ALA A 143 O VAL A 192 SHEET 6 AA1 7 ILE A 131 VAL A 136 -1 N GLN A 134 O PHE A 146 SHEET 7 AA1 7 SER A 159 SER A 161 1 O SER A 161 N LYS A 135 SHEET 1 AA2 3 SER A 238 ALA A 240 0 SHEET 2 AA2 3 LEU A 352 LEU A 355 -1 O ARG A 354 N ARG A 239 SHEET 3 AA2 3 TYR A 369 VAL A 371 -1 O ILE A 370 N LEU A 353 SHEET 1 AA3 2 VAL A 341 ALA A 343 0 SHEET 2 AA3 2 SER A 378 ASN A 380 -1 O ASN A 380 N VAL A 341 SHEET 1 AA4 2 VAL A 428 VAL A 430 0 SHEET 2 AA4 2 GLU A 437 VAL A 439 -1 O VAL A 438 N GLU A 429 SITE 1 AC1 6 SER A 94 VAL A 95 ASP A 96 GLU A 99 SITE 2 AC1 6 PHE A 105 LYS A 108 SITE 1 AC2 5 GLU A 234 PHE A 235 PHE A 236 LEU A 353 SITE 2 AC2 5 HOH A 761 SITE 1 AC3 2 ARG A 442 LYS A 443 SITE 1 AC4 1 TYR A 184 SITE 1 AC5 2 ARG A 120 ARG A 222 SITE 1 AC6 2 SER A 171 THR A 363 CRYST1 129.500 129.500 160.010 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007722 0.004458 0.000000 0.00000 SCALE2 0.000000 0.008917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006250 0.00000