HEADER HYDROLASE 09-APR-20 6WII TITLE CRYSTAL STRUCTURE OF THE K. PNEUMONIAE LPXH/JH-LPH-41 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 5 EC: 3.6.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: LPXH_1, LPXH, C3483_19950, NCTC9128_00880, SOURCE 5 SAMEA104305404_03891; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXH, JH-LPH-41, LIPID A, ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.COCHRANE,J.CHO,B.A.FENTON,P.ZHOU REVDAT 2 18-OCT-23 6WII 1 REMARK REVDAT 1 29-JUL-20 6WII 0 JRNL AUTH S.H.KWAK,C.S.COCHRANE,A.F.ENNIS,W.Y.LIM,C.G.WEBSTER,J.CHO, JRNL AUTH 2 B.A.FENTON,P.ZHOU,J.HONG JRNL TITL SYNTHESIS AND EVALUATION OF SULFONYL PIPERAZINE LPXH JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.CHEM. V. 102 04055 2020 JRNL REFN ISSN 0045-2068 JRNL PMID 32663666 JRNL DOI 10.1016/J.BIOORG.2020.104055 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7700 - 4.1100 1.00 2688 141 0.1712 0.1938 REMARK 3 2 4.1100 - 3.2700 1.00 2595 137 0.1423 0.1712 REMARK 3 3 3.2600 - 2.8500 1.00 2569 135 0.1639 0.1838 REMARK 3 4 2.8500 - 2.5900 1.00 2577 136 0.1657 0.2167 REMARK 3 5 2.5900 - 2.4100 1.00 2556 135 0.1684 0.1982 REMARK 3 6 2.4100 - 2.2600 1.00 2573 135 0.1541 0.1592 REMARK 3 7 2.2600 - 2.1500 1.00 2511 132 0.1508 0.1928 REMARK 3 8 2.1500 - 2.0600 0.99 2545 134 0.1502 0.1854 REMARK 3 9 2.0600 - 1.9800 1.00 2539 134 0.1545 0.1713 REMARK 3 10 1.9800 - 1.9100 1.00 2529 133 0.1688 0.1938 REMARK 3 11 1.9100 - 1.8500 1.00 2536 134 0.1872 0.1981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.156 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2074 REMARK 3 ANGLE : 0.863 2831 REMARK 3 CHIRALITY : 0.056 299 REMARK 3 PLANARITY : 0.006 369 REMARK 3 DIHEDRAL : 20.631 740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5366 -46.8841 -10.0117 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.2358 REMARK 3 T33: 0.1882 T12: 0.0214 REMARK 3 T13: 0.0070 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.4348 L22: 0.6244 REMARK 3 L33: 0.4749 L12: 0.5595 REMARK 3 L13: -0.0873 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.2272 S13: -0.0105 REMARK 3 S21: -0.1221 S22: -0.0562 S23: -0.1093 REMARK 3 S31: 0.0869 S32: 0.0881 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7719 -48.6042 -5.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.2316 REMARK 3 T33: 0.2083 T12: 0.0036 REMARK 3 T13: -0.0032 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.4613 L22: 0.2556 REMARK 3 L33: 0.2355 L12: 0.3663 REMARK 3 L13: -0.1291 L23: 0.2083 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0165 S13: 0.0015 REMARK 3 S21: 0.0305 S22: -0.0271 S23: 0.0455 REMARK 3 S31: 0.0301 S32: -0.1119 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4486 -47.1468 4.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.2908 REMARK 3 T33: 0.2192 T12: -0.0230 REMARK 3 T13: 0.0185 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.2977 L22: 0.3962 REMARK 3 L33: 0.5148 L12: -0.1814 REMARK 3 L13: 0.0634 L23: -0.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.3990 S13: -0.0963 REMARK 3 S21: 0.1299 S22: -0.1171 S23: 0.0600 REMARK 3 S31: -0.0378 S32: -0.0637 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8639 -33.1414 3.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2432 REMARK 3 T33: 0.3046 T12: -0.0192 REMARK 3 T13: -0.0154 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.1265 L22: 0.1347 REMARK 3 L33: 0.4976 L12: 0.1781 REMARK 3 L13: -0.2094 L23: -0.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.1796 S13: 0.3230 REMARK 3 S21: 0.2026 S22: -0.0003 S23: -0.1144 REMARK 3 S31: -0.2325 S32: 0.0327 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8059 -36.4119 2.9469 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.3669 REMARK 3 T33: 0.3277 T12: -0.0347 REMARK 3 T13: 0.0585 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 0.4361 L22: 0.5183 REMARK 3 L33: 1.0590 L12: -0.0377 REMARK 3 L13: 0.2714 L23: 0.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.3349 S12: -0.7229 S13: 0.5319 REMARK 3 S21: 0.3578 S22: -0.4514 S23: 0.3804 REMARK 3 S31: 0.2212 S32: -0.1338 S33: 0.3086 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3521 -40.2489 -10.3088 REMARK 3 T TENSOR REMARK 3 T11: 0.2654 T22: 0.3718 REMARK 3 T33: 0.3196 T12: 0.0646 REMARK 3 T13: 0.0264 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.1276 L22: 0.2135 REMARK 3 L33: 0.1398 L12: -0.2085 REMARK 3 L13: 0.0002 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: 0.3927 S13: 0.1431 REMARK 3 S21: -0.5200 S22: -0.5586 S23: -0.1537 REMARK 3 S31: -0.1148 S32: -0.1143 S33: -0.0119 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4892 -30.7951 -0.5023 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.2271 REMARK 3 T33: 0.2599 T12: -0.0148 REMARK 3 T13: -0.0094 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.1160 L22: 0.8599 REMARK 3 L33: 0.4865 L12: 0.7668 REMARK 3 L13: -0.5931 L23: -0.4808 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.0435 S13: 0.2928 REMARK 3 S21: -0.0143 S22: 0.0422 S23: 0.0428 REMARK 3 S31: -0.1054 S32: 0.0525 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5250 -43.2512 -17.6997 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.3247 REMARK 3 T33: 0.2376 T12: -0.0319 REMARK 3 T13: 0.0011 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.3882 L22: 0.3465 REMARK 3 L33: 0.1069 L12: -0.2107 REMARK 3 L13: -0.2464 L23: 0.1208 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.0778 S13: -0.1326 REMARK 3 S21: 0.0131 S22: -0.0385 S23: -0.0064 REMARK 3 S31: 0.0045 S32: -0.0059 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.97 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6PJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MG/ML OF LPXH, 0.27 MM JH-LPH-41, 10 REMARK 280 MM MES (PH 6.0), 100 MM NACL, 100 MM KCL, 50 MM SODIUM CITRATE REMARK 280 (PH 5.5), 18.5% PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), 0.5MM REMARK 280 DTT, 1% DMSO, 2.5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.88333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.88333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 ALA A 163 REMARK 465 ASN A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 MET A 169 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 27 CD OE1 NE2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 LYS A 131 CE NZ REMARK 470 ARG A 151 NE CZ NH1 NH2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 GLU A 242 CD OE1 OE2 REMARK 470 LEU A 245 CD1 CD2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 39 46.47 -92.98 REMARK 500 HIS A 195 -48.53 71.37 REMARK 500 HIS A 220 -60.52 -93.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 HIS A 10 NE2 116.6 REMARK 620 3 ASP A 41 OD2 81.4 96.0 REMARK 620 4 HIS A 197 NE2 106.3 91.3 165.6 REMARK 620 5 HOH A 448 O 102.8 135.8 69.9 96.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASN A 79 OD1 86.8 REMARK 620 3 HIS A 114 NE2 96.5 93.4 REMARK 620 4 HIS A 195 ND1 173.5 94.1 89.9 REMARK 620 5 HOH A 448 O 76.9 126.7 138.2 97.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U2V A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 DBREF1 6WII A 1 240 UNP A0A1S0WIC1_KLEPN DBREF2 6WII A A0A1S0WIC1 1 240 SEQADV 6WII LEU A 241 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII GLU A 242 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII GLU A 243 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII ASN A 244 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII LEU A 245 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII TYR A 246 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII PHE A 247 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII GLN A 248 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII SER A 249 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 250 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 251 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 252 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 253 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 254 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 255 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 256 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 257 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 258 UNP A0A1S0WIC EXPRESSION TAG SEQADV 6WII HIS A 259 UNP A0A1S0WIC EXPRESSION TAG SEQRES 1 A 259 MET ALA THR LEU PHE ILE ALA ASP LEU HIS LEU GLN THR SEQRES 2 A 259 GLU GLU PRO ALA ILE THR ALA GLY PHE LEU ARG PHE LEU SEQRES 3 A 259 GLN GLY GLU ALA ARG GLN ALA ASP ALA LEU TYR ILE LEU SEQRES 4 A 259 GLY ASP LEU PHE GLU ALA TRP ILE GLY ASP ASP ASP PRO SEQRES 5 A 259 ASN PRO LEU HIS GLN GLN ILE ALA SER ALA ILE LYS ALA SEQRES 6 A 259 VAL VAL ASP ALA GLY VAL PRO CYS TYR PHE ILE HIS GLY SEQRES 7 A 259 ASN ARG ASP PHE LEU VAL GLY GLN ARG PHE ALA ARG GLN SEQRES 8 A 259 SER GLY MET ILE LEU LEU ALA GLU GLU GLU ARG LEU ASP SEQRES 9 A 259 LEU TYR GLY ARG GLU VAL LEU ILE MET HIS GLY ASP THR SEQRES 10 A 259 LEU CYS THR ASP ASP GLN GLY TYR LEU ALA PHE ARG ALA SEQRES 11 A 259 LYS VAL HIS THR PRO TRP ILE GLN ARG LEU PHE LEU ALA SEQRES 12 A 259 LEU PRO LEU PHE ILE ARG HIS ARG ILE ALA ALA ARG MET SEQRES 13 A 259 ARG ALA ASP SER LYS ALA ALA ASN SER SER LYS SER MET SEQRES 14 A 259 GLU ILE MET ASP VAL ASN PRO GLN ALA VAL VAL ASP ALA SEQRES 15 A 259 MET GLU ARG HIS HIS VAL GLN TRP LEU ILE HIS GLY HIS SEQRES 16 A 259 THR HIS ARG PRO ALA VAL HIS GLU LEU GLN ALA ASN GLY SEQRES 17 A 259 GLN PRO ALA TRP ARG VAL VAL LEU GLY ALA TRP HIS SER SEQRES 18 A 259 GLU GLY SER MET VAL LYS VAL THR PRO ASP ASP VAL GLU SEQRES 19 A 259 LEU ILE HIS PHE PRO PHE LEU GLU GLU ASN LEU TYR PHE SEQRES 20 A 259 GLN SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET U2V A 301 38 HET MN A 302 1 HET MN A 303 1 HET DMS A 304 4 HET DMS A 305 4 HET DMS A 306 4 HET GOL A 307 12 HETNAM U2V 5-({[4-({4-[3-CHLORO-5-(TRIFLUOROMETHYL) HETNAM 2 U2V PHENYL]PIPERAZIN-1-YL}SULFONYL) HETNAM 3 U2V PHENYL]CARBAMOYL}AMINO)-N-HYDROXYPENTANAMIDE HETNAM MN MANGANESE (II) ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 U2V C23 H27 CL F3 N5 O5 S FORMUL 3 MN 2(MN 2+) FORMUL 5 DMS 3(C2 H6 O S) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *152(H2 O) HELIX 1 AA1 GLU A 15 GLY A 28 1 14 HELIX 2 AA2 GLU A 29 ALA A 33 5 5 HELIX 3 AA3 ASN A 53 ALA A 69 1 17 HELIX 4 AA4 GLY A 85 GLY A 93 1 9 HELIX 5 AA5 GLY A 115 CYS A 119 5 5 HELIX 6 AA6 ASP A 122 HIS A 133 1 12 HELIX 7 AA7 THR A 134 LEU A 144 1 11 HELIX 8 AA8 PRO A 145 ASP A 159 1 15 HELIX 9 AA9 ASN A 175 HIS A 186 1 12 SHEET 1 AA1 6 ILE A 95 LEU A 96 0 SHEET 2 AA1 6 CYS A 73 PHE A 75 1 N PHE A 75 O ILE A 95 SHEET 3 AA1 6 ALA A 35 ILE A 38 1 N ILE A 38 O TYR A 74 SHEET 4 AA1 6 THR A 3 ILE A 6 1 N LEU A 4 O TYR A 37 SHEET 5 AA1 6 GLY A 223 VAL A 228 -1 O VAL A 228 N THR A 3 SHEET 6 AA1 6 VAL A 233 PHE A 238 -1 O ILE A 236 N MET A 225 SHEET 1 AA2 5 GLU A 100 LEU A 105 0 SHEET 2 AA2 5 ARG A 108 MET A 113 -1 O ARG A 108 N LEU A 105 SHEET 3 AA2 5 TRP A 190 HIS A 193 1 O TRP A 190 N LEU A 111 SHEET 4 AA2 5 GLN A 209 VAL A 215 1 O VAL A 214 N LEU A 191 SHEET 5 AA2 5 ALA A 200 ALA A 206 -1 N LEU A 204 O ALA A 211 LINK OD1 ASP A 8 MN MN A 302 1555 1555 2.03 LINK NE2 HIS A 10 MN MN A 302 1555 1555 2.23 LINK OD2 ASP A 41 MN MN A 302 1555 1555 2.69 LINK OD2 ASP A 41 MN MN A 303 1555 1555 2.18 LINK OD1 ASN A 79 MN MN A 303 1555 1555 1.92 LINK NE2 HIS A 114 MN MN A 303 1555 1555 2.23 LINK ND1 HIS A 195 MN MN A 303 1555 1555 2.16 LINK NE2 HIS A 197 MN MN A 302 1555 1555 2.34 LINK MN MN A 302 O HOH A 448 1555 1555 1.87 LINK MN MN A 303 O HOH A 448 1555 1555 2.16 SITE 1 AC1 16 ALA A 45 TRP A 46 ASN A 79 ARG A 80 SITE 2 AC1 16 LEU A 83 CYS A 119 ASP A 122 TYR A 125 SITE 3 AC1 16 GLN A 138 PHE A 141 ILE A 152 ALA A 153 SITE 4 AC1 16 ARG A 157 MET A 172 HIS A 195 DMS A 304 SITE 1 AC2 6 ASP A 8 HIS A 10 ASP A 41 HIS A 197 SITE 2 AC2 6 MN A 303 HOH A 448 SITE 1 AC3 7 ASP A 8 ASP A 41 ASN A 79 HIS A 114 SITE 2 AC3 7 HIS A 195 MN A 302 HOH A 448 SITE 1 AC4 2 PHE A 128 U2V A 301 SITE 1 AC5 7 ARG A 24 GLU A 29 MET A 225 ASP A 232 SITE 2 AC5 7 PHE A 238 HOH A 404 HOH A 486 SITE 1 AC6 5 ALA A 45 ASP A 51 ASN A 53 HIS A 150 SITE 2 AC6 5 HOH A 401 SITE 1 AC7 9 THR A 3 ASP A 34 ASP A 104 LEU A 105 SITE 2 AC7 9 TYR A 106 PHE A 147 HOH A 408 HOH A 416 SITE 3 AC7 9 HOH A 450 CRYST1 105.710 105.710 53.650 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009460 0.005462 0.000000 0.00000 SCALE2 0.000000 0.010923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018639 0.00000