HEADER VIRAL PROTEIN 10-APR-20 6WIQ TITLE CRYSTAL STRUCTURE OF THE CO-FACTOR COMPLEX OF NSP7 AND THE C-TERMINAL TITLE 2 DOMAIN OF NSP8 FROM SARS COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3860-3942; COMPND 5 SYNONYM: NSP7,SARS-COV-2 NSP7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 8; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 4019-4140); COMPND 11 SYNONYM: NSP8,SARS-COV-2 NSP8; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 12 2; SOURCE 13 ORGANISM_COMMON: 2019-NCOV; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 GENE: REP, 1A-1B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS SARS COV-2, CO-FACTOR FOR RNA POLYMERASE NSP12, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WILAMOWSKI,Y.KIM,R.JEDRZEJCZAK,N.MALTSEVA,M.ENDRES,A.GODZIK, AUTHOR 2 K.MICHALSKA,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 6 18-OCT-23 6WIQ 1 REMARK REVDAT 5 25-AUG-21 6WIQ 1 JRNL REVDAT 4 28-JUL-21 6WIQ 1 JRNL REVDAT 3 27-JAN-21 6WIQ 1 COMPND REVDAT 2 06-MAY-20 6WIQ 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV HELIX SSBOND ATOM REVDAT 1 22-APR-20 6WIQ 0 JRNL AUTH M.WILAMOWSKI,M.HAMMEL,W.LEITE,Q.ZHANG,Y.KIM,K.L.WEISS, JRNL AUTH 2 R.JEDRZEJCZAK,D.J.ROSENBERG,Y.FAN,J.WOWER,J.C.BIERMA, JRNL AUTH 3 A.H.SARKER,S.E.TSUTAKAWA,S.V.PINGALI,H.M.O'NEILL, JRNL AUTH 4 A.JOACHIMIAK,G.L.HURA JRNL TITL TRANSIENT AND STABILIZED COMPLEXES OF NSP7, NSP8, AND NSP12 JRNL TITL 2 IN SARS-COV-2 REPLICATION. JRNL REF BIOPHYS.J. V. 120 3152 2021 JRNL REFN ESSN 1542-0086 JRNL PMID 34197805 JRNL DOI 10.1016/J.BPJ.2021.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 5108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3900 - 3.5900 0.99 2496 150 0.1875 0.2384 REMARK 3 2 3.5900 - 2.8500 0.96 2337 125 0.3121 0.3229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.284 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 105.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 125.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 1523 REMARK 3 ANGLE : 0.357 2066 REMARK 3 CHIRALITY : 0.036 260 REMARK 3 PLANARITY : 0.002 258 REMARK 3 DIHEDRAL : 14.432 567 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2400 -1.9901 -4.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.9573 T22: 1.0497 REMARK 3 T33: 0.8529 T12: 0.0821 REMARK 3 T13: 0.1141 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.7386 L22: 9.1850 REMARK 3 L33: 0.8065 L12: -1.4221 REMARK 3 L13: -0.6188 L23: 2.5976 REMARK 3 S TENSOR REMARK 3 S11: -0.7876 S12: -0.7448 S13: -0.7000 REMARK 3 S21: 0.7316 S22: -0.1234 S23: 0.4762 REMARK 3 S31: -0.5786 S32: -0.6392 S33: 0.0852 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4178 -9.9404 -2.9173 REMARK 3 T TENSOR REMARK 3 T11: 1.0347 T22: 1.2643 REMARK 3 T33: 1.3956 T12: 0.0318 REMARK 3 T13: 0.1308 T23: -0.1543 REMARK 3 L TENSOR REMARK 3 L11: 8.5920 L22: 3.0057 REMARK 3 L33: 4.8796 L12: 0.5118 REMARK 3 L13: 5.5726 L23: 2.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 1.3318 S13: -1.7027 REMARK 3 S21: -2.2381 S22: 0.1459 S23: -1.5186 REMARK 3 S31: 0.3416 S32: 2.4964 S33: -1.3154 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6635 -1.6996 -12.6578 REMARK 3 T TENSOR REMARK 3 T11: 1.1046 T22: 1.0233 REMARK 3 T33: 1.0948 T12: -0.1408 REMARK 3 T13: -0.1774 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.6213 L22: 8.1473 REMARK 3 L33: 2.9795 L12: 3.9812 REMARK 3 L13: -1.9635 L23: -1.2983 REMARK 3 S TENSOR REMARK 3 S11: 0.3482 S12: 1.3103 S13: 0.3257 REMARK 3 S21: -0.9248 S22: -0.6095 S23: -0.0076 REMARK 3 S31: 0.0526 S32: 0.2022 S33: 0.2766 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9683 -7.6670 -12.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.9890 T22: 1.2918 REMARK 3 T33: 1.4649 T12: -0.0992 REMARK 3 T13: -0.1293 T23: 0.1057 REMARK 3 L TENSOR REMARK 3 L11: 3.6836 L22: 5.9977 REMARK 3 L33: 4.8053 L12: 3.7877 REMARK 3 L13: -1.5231 L23: 1.4567 REMARK 3 S TENSOR REMARK 3 S11: -0.7622 S12: 0.5011 S13: 0.5638 REMARK 3 S21: -1.2229 S22: 0.5831 S23: 2.1445 REMARK 3 S31: -1.4340 S32: 0.1795 S33: 0.2905 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2485 -19.5372 -2.9536 REMARK 3 T TENSOR REMARK 3 T11: 1.4785 T22: 0.8538 REMARK 3 T33: 1.3712 T12: 0.0202 REMARK 3 T13: -0.1741 T23: 0.3256 REMARK 3 L TENSOR REMARK 3 L11: 5.2775 L22: 0.1297 REMARK 3 L33: 4.7668 L12: 0.8004 REMARK 3 L13: -4.9277 L23: -0.7628 REMARK 3 S TENSOR REMARK 3 S11: -1.1078 S12: 0.9220 S13: -1.8496 REMARK 3 S21: -1.0412 S22: -0.1372 S23: 0.8460 REMARK 3 S31: 0.1688 S32: 0.4219 S33: 1.3790 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1863 -18.8203 7.5275 REMARK 3 T TENSOR REMARK 3 T11: 1.6887 T22: 1.5446 REMARK 3 T33: 1.5186 T12: -0.1011 REMARK 3 T13: 0.2733 T23: -0.3176 REMARK 3 L TENSOR REMARK 3 L11: 6.1611 L22: 4.0563 REMARK 3 L33: 4.3376 L12: 0.2003 REMARK 3 L13: -3.9881 L23: 2.3053 REMARK 3 S TENSOR REMARK 3 S11: -0.4112 S12: 0.0701 S13: -0.8754 REMARK 3 S21: -0.6280 S22: -2.3901 S23: 0.1207 REMARK 3 S31: -1.1700 S32: -1.4027 S33: 1.6902 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1270 -9.7644 5.1904 REMARK 3 T TENSOR REMARK 3 T11: 0.9339 T22: 0.9196 REMARK 3 T33: 1.1966 T12: 0.0578 REMARK 3 T13: 0.0790 T23: -0.1498 REMARK 3 L TENSOR REMARK 3 L11: 5.3581 L22: 6.2637 REMARK 3 L33: 9.7540 L12: -0.2066 REMARK 3 L13: -1.7385 L23: -0.6948 REMARK 3 S TENSOR REMARK 3 S11: -0.7785 S12: -0.6173 S13: -0.7353 REMARK 3 S21: 0.6105 S22: -0.2702 S23: 1.2564 REMARK 3 S31: -0.4533 S32: -1.0694 S33: 0.3423 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6254 -16.0317 -8.7861 REMARK 3 T TENSOR REMARK 3 T11: 0.9811 T22: 1.1219 REMARK 3 T33: 1.3368 T12: 0.0268 REMARK 3 T13: 0.1699 T23: -0.1734 REMARK 3 L TENSOR REMARK 3 L11: 2.7612 L22: 2.2928 REMARK 3 L33: 2.2091 L12: -1.9252 REMARK 3 L13: 0.8838 L23: 0.7811 REMARK 3 S TENSOR REMARK 3 S11: 0.5957 S12: 0.9978 S13: -0.7468 REMARK 3 S21: -0.7879 S22: 0.3798 S23: 2.7322 REMARK 3 S31: 0.9577 S32: -1.9508 S33: -0.6643 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6761 -20.0310 -16.6426 REMARK 3 T TENSOR REMARK 3 T11: 0.8273 T22: 0.9321 REMARK 3 T33: 1.0950 T12: -0.1012 REMARK 3 T13: 0.0952 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 4.4336 L22: 3.7316 REMARK 3 L33: 4.2922 L12: -1.2738 REMARK 3 L13: -1.1364 L23: 4.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.7190 S12: -0.8196 S13: -0.2841 REMARK 3 S21: 0.5028 S22: -0.4643 S23: 0.5766 REMARK 3 S31: 0.3548 S32: 1.3750 S33: -0.2629 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0948 -30.7139 -15.7251 REMARK 3 T TENSOR REMARK 3 T11: 1.0024 T22: 1.4509 REMARK 3 T33: 1.9745 T12: -0.3577 REMARK 3 T13: 0.3250 T23: -0.4438 REMARK 3 L TENSOR REMARK 3 L11: 2.4890 L22: 2.3364 REMARK 3 L33: 6.6415 L12: -0.9994 REMARK 3 L13: 3.0384 L23: 1.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0195 S13: 2.5012 REMARK 3 S21: 0.2089 S22: 0.6411 S23: 2.7621 REMARK 3 S31: -0.7514 S32: -1.1552 S33: -0.8363 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3558 -22.2552 -21.4266 REMARK 3 T TENSOR REMARK 3 T11: 1.1150 T22: 1.3932 REMARK 3 T33: 1.1710 T12: -0.2677 REMARK 3 T13: -0.0636 T23: -0.1792 REMARK 3 L TENSOR REMARK 3 L11: 3.2836 L22: 8.1794 REMARK 3 L33: 8.6190 L12: -3.4890 REMARK 3 L13: -3.2308 L23: -1.5858 REMARK 3 S TENSOR REMARK 3 S11: 0.4657 S12: 0.0408 S13: -0.4262 REMARK 3 S21: -0.9478 S22: -0.3712 S23: -1.6144 REMARK 3 S31: 1.6261 S32: -1.4098 S33: -0.5503 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2068 -24.1755 -24.9960 REMARK 3 T TENSOR REMARK 3 T11: 1.4166 T22: 1.7282 REMARK 3 T33: 1.5592 T12: -0.0435 REMARK 3 T13: -0.1134 T23: -0.3414 REMARK 3 L TENSOR REMARK 3 L11: 1.4751 L22: 7.6785 REMARK 3 L33: 6.1822 L12: -3.0725 REMARK 3 L13: 0.0544 L23: -3.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.4056 S12: 2.0315 S13: -0.5783 REMARK 3 S21: -2.5907 S22: -0.6930 S23: -0.1236 REMARK 3 S31: -0.3542 S32: -0.4461 S33: -0.3141 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2134 -35.7176 -18.0933 REMARK 3 T TENSOR REMARK 3 T11: 2.1262 T22: 1.4919 REMARK 3 T33: 2.5677 T12: 0.1466 REMARK 3 T13: 0.5193 T23: -0.6297 REMARK 3 L TENSOR REMARK 3 L11: 4.7812 L22: 2.9789 REMARK 3 L33: 5.5610 L12: -1.4756 REMARK 3 L13: 4.4460 L23: -3.2749 REMARK 3 S TENSOR REMARK 3 S11: 3.1985 S12: 1.9846 S13: -5.0188 REMARK 3 S21: 2.6404 S22: 1.4405 S23: 0.6461 REMARK 3 S31: -0.9637 S32: 1.6244 S33: -4.3291 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0171 -35.3725 -26.1282 REMARK 3 T TENSOR REMARK 3 T11: 1.3046 T22: 1.0351 REMARK 3 T33: 1.3165 T12: -0.0827 REMARK 3 T13: -0.5879 T23: -2.0853 REMARK 3 L TENSOR REMARK 3 L11: 3.5138 L22: 8.1834 REMARK 3 L33: 2.0018 L12: -4.1336 REMARK 3 L13: -2.9569 L23: -2.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.5681 S12: 1.9103 S13: -1.5721 REMARK 3 S21: -3.4933 S22: 1.9671 S23: -1.5590 REMARK 3 S31: 0.8324 S32: 2.2395 S33: -1.0072 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5409 -39.9784 -20.9585 REMARK 3 T TENSOR REMARK 3 T11: 1.8652 T22: 2.2326 REMARK 3 T33: 2.0601 T12: 0.2383 REMARK 3 T13: 0.1285 T23: -0.7819 REMARK 3 L TENSOR REMARK 3 L11: 4.9646 L22: 8.9886 REMARK 3 L33: 8.0184 L12: 1.8053 REMARK 3 L13: -1.1030 L23: -8.4511 REMARK 3 S TENSOR REMARK 3 S11: -0.4522 S12: 1.1081 S13: -2.6115 REMARK 3 S21: 0.6195 S22: 3.9808 S23: -3.0944 REMARK 3 S31: -0.8052 S32: 0.7188 S33: -0.5945 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8707 -39.4597 -15.4298 REMARK 3 T TENSOR REMARK 3 T11: 1.7978 T22: 0.8458 REMARK 3 T33: 1.9251 T12: 0.3777 REMARK 3 T13: -0.7297 T23: -0.2751 REMARK 3 L TENSOR REMARK 3 L11: 4.9984 L22: 6.8505 REMARK 3 L33: 1.6414 L12: 1.1324 REMARK 3 L13: -2.1669 L23: -2.6616 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.3643 S13: -3.1783 REMARK 3 S21: 2.9117 S22: 1.2768 S23: -2.3570 REMARK 3 S31: 0.8328 S32: 0.4029 S33: -1.3344 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1555 -22.3003 -22.3594 REMARK 3 T TENSOR REMARK 3 T11: 1.7453 T22: 1.7565 REMARK 3 T33: 0.9361 T12: -0.4258 REMARK 3 T13: -0.4194 T23: -0.3678 REMARK 3 L TENSOR REMARK 3 L11: 5.6022 L22: 6.1662 REMARK 3 L33: 7.3337 L12: -1.9695 REMARK 3 L13: 0.3233 L23: -6.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.9178 S12: 1.0982 S13: -0.8360 REMARK 3 S21: 0.4240 S22: 0.4610 S23: -0.8903 REMARK 3 S31: -0.9475 S32: 3.0343 S33: -0.8812 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5F22 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 1.5 M AMMONIUM REMARK 280 PHOSPHATE DIBASIC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.72750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.72750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.07650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.39100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.07650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.39100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.72750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.07650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.39100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.72750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.07650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.39100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 80 REMARK 465 THR A 81 REMARK 465 LEU A 82 REMARK 465 GLN A 83 REMARK 465 ASN B 192 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLN B 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 1 -166.22 -165.78 REMARK 500 LYS A 43 -60.26 -97.71 REMARK 500 ASP B 161 -155.80 -102.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 6WIQ A 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 6WIQ B 77 198 UNP P0DTD1 R1AB_SARS2 4019 4140 SEQADV 6WIQ SER A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 6WIQ ASN A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 6WIQ ALA A 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 86 SER ASN ALA SER LYS MET SER ASP VAL LYS CYS THR SER SEQRES 2 A 86 VAL VAL LEU LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SEQRES 3 A 86 SER SER SER LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS SEQRES 4 A 86 ASN ASP ILE LEU LEU ALA LYS ASP THR THR GLU ALA PHE SEQRES 5 A 86 GLU LYS MET VAL SER LEU LEU SER VAL LEU LEU SER MET SEQRES 6 A 86 GLN GLY ALA VAL ASP ILE ASN LYS LEU CYS GLU GLU MET SEQRES 7 A 86 LEU ASP ASN ARG ALA THR LEU GLN SEQRES 1 B 122 GLU ASP LYS ARG ALA LYS VAL THR SER ALA MET GLN THR SEQRES 2 B 122 MET LEU PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA SEQRES 3 B 122 LEU ASN ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL SEQRES 4 B 122 PRO LEU ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU SEQRES 5 B 122 MET VAL VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR SEQRES 6 B 122 CYS ASP GLY THR THR PHE THR TYR ALA SER ALA LEU TRP SEQRES 7 B 122 GLU ILE GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL SEQRES 8 B 122 GLN LEU SER GLU ILE SER MET ASP ASN SER PRO ASN LEU SEQRES 9 B 122 ALA TRP PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER SEQRES 10 B 122 ALA VAL LYS LEU GLN HELIX 1 AA1 LYS A 2 LEU A 20 1 19 HELIX 2 AA2 ARG A 21 SER A 24 5 4 HELIX 3 AA3 SER A 25 LEU A 41 1 17 HELIX 4 AA4 ASP A 44 SER A 61 1 18 HELIX 5 AA5 ASP A 67 ASP A 77 1 11 HELIX 6 AA6 ASP B 78 ASP B 99 1 22 HELIX 7 AA7 ASN B 100 ASP B 112 1 13 HELIX 8 AA8 ASP B 134 THR B 141 1 8 HELIX 9 AA9 ASN B 176 LEU B 180 5 5 SHEET 1 AA1 5 LYS B 127 ILE B 132 0 SHEET 2 AA1 5 LEU B 184 ARG B 190 -1 O ALA B 188 N LEU B 128 SHEET 3 AA1 5 LEU B 153 VAL B 160 -1 N GLU B 155 O LEU B 189 SHEET 4 AA1 5 THR B 146 THR B 148 -1 N PHE B 147 O TRP B 154 SHEET 5 AA1 5 CYS B 142 ASP B 143 -1 N ASP B 143 O THR B 146 SSBOND 1 CYS A 8 CYS A 8 1555 4555 2.03 CISPEP 1 TRP B 182 PRO B 183 0 1.14 CRYST1 52.153 70.782 115.455 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008661 0.00000