HEADER IMMUNE SYSTEM 11-APR-20 6WJ0 TITLE CRYSTAL STRUCTURE OF FAB 54-4H03 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 54-4H03 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 54-4H03 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.C.WU,I.A.WILSON REVDAT 4 18-OCT-23 6WJ0 1 REMARK REVDAT 3 23-SEP-20 6WJ0 1 JRNL REVDAT 2 15-JUL-20 6WJ0 1 JRNL REVDAT 1 01-JUL-20 6WJ0 0 JRNL AUTH N.C.WU,S.F.ANDREWS,J.E.RAAB,S.O'CONNELL,C.A.SCHRAMM,X.DING, JRNL AUTH 2 M.J.CHAMBERS,K.LEUNG,L.WANG,Y.ZHANG,J.R.MASCOLA,D.C.DOUEK, JRNL AUTH 3 J.E.LEDGERWOOD,A.B.MCDERMOTT,I.A.WILSON JRNL TITL CONVERGENT EVOLUTION IN BREADTH OF TWO VH6-1-ENCODED JRNL TITL 2 INFLUENZA ANTIBODY CLONOTYPES FROM A SINGLE DONOR. JRNL REF CELL HOST MICROBE V. 28 434 2020 JRNL REFN ESSN 1934-6069 JRNL PMID 32619441 JRNL DOI 10.1016/J.CHOM.2020.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1320 - 4.6316 1.00 2928 149 0.1567 0.1872 REMARK 3 2 4.6316 - 3.6771 1.00 2805 139 0.1334 0.1500 REMARK 3 3 3.6771 - 3.2125 1.00 2766 142 0.1527 0.2061 REMARK 3 4 3.2125 - 2.9189 1.00 2741 152 0.1734 0.2192 REMARK 3 5 2.9189 - 2.7097 1.00 2735 151 0.1842 0.2382 REMARK 3 6 2.7097 - 2.5500 1.00 2729 145 0.1847 0.2401 REMARK 3 7 2.5500 - 2.4223 1.00 2691 150 0.1798 0.2367 REMARK 3 8 2.4223 - 2.3168 1.00 2733 142 0.1746 0.2041 REMARK 3 9 2.3168 - 2.2277 1.00 2683 139 0.1710 0.2172 REMARK 3 10 2.2277 - 2.1508 1.00 2742 129 0.1695 0.2243 REMARK 3 11 2.1508 - 2.0835 1.00 2670 146 0.1631 0.2253 REMARK 3 12 2.0835 - 2.0240 1.00 2715 138 0.1661 0.2164 REMARK 3 13 2.0240 - 1.9707 1.00 2734 124 0.1625 0.2084 REMARK 3 14 1.9707 - 1.9226 1.00 2702 131 0.1827 0.2162 REMARK 3 15 1.9226 - 1.8789 1.00 2694 119 0.1861 0.2223 REMARK 3 16 1.8789 - 1.8389 1.00 2684 136 0.1980 0.2248 REMARK 3 17 1.8389 - 1.8022 0.97 2641 127 0.2303 0.2494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3698 REMARK 3 ANGLE : 1.002 5073 REMARK 3 CHIRALITY : 0.061 573 REMARK 3 PLANARITY : 0.006 653 REMARK 3 DIHEDRAL : 17.369 2244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:97) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0499 -18.4571 11.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2020 REMARK 3 T33: 0.2234 T12: 0.0089 REMARK 3 T13: 0.0277 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.9331 L22: 2.4666 REMARK 3 L33: 2.3890 L12: 0.7096 REMARK 3 L13: -0.9461 L23: -0.8162 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.1946 S13: -0.2420 REMARK 3 S21: -0.0960 S22: -0.0212 S23: -0.0016 REMARK 3 S31: 0.3563 S32: -0.0185 S33: 0.0682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 98:133) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4866 -2.8138 18.2614 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.2328 REMARK 3 T33: 0.1724 T12: 0.0053 REMARK 3 T13: -0.0319 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.0085 L22: 1.2850 REMARK 3 L33: 1.6021 L12: -0.1575 REMARK 3 L13: -0.1145 L23: -0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.2492 S13: -0.0013 REMARK 3 S21: 0.2915 S22: -0.1143 S23: -0.0621 REMARK 3 S31: -0.0686 S32: 0.1532 S33: 0.0148 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 134:214) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6682 7.5915 24.1184 REMARK 3 T TENSOR REMARK 3 T11: 0.3997 T22: 0.3737 REMARK 3 T33: 0.2674 T12: -0.0134 REMARK 3 T13: -0.1193 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.4969 L22: 1.8326 REMARK 3 L33: 3.6284 L12: -0.5055 REMARK 3 L13: -1.3538 L23: 1.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.4314 S13: -0.1146 REMARK 3 S21: 0.6941 S22: 0.0292 S23: -0.2334 REMARK 3 S31: 0.1661 S32: 0.3884 S33: 0.0205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 1:106) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5390 -2.6985 15.2811 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.2213 REMARK 3 T33: 0.2119 T12: -0.0027 REMARK 3 T13: 0.0328 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.3607 L22: 3.5227 REMARK 3 L33: 1.9230 L12: -0.4206 REMARK 3 L13: -0.4227 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0829 S13: -0.1229 REMARK 3 S21: 0.0547 S22: -0.0805 S23: 0.3540 REMARK 3 S31: 0.0170 S32: -0.2328 S33: 0.0979 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 107:213) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3339 22.2191 17.0152 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.2932 REMARK 3 T33: 0.2223 T12: -0.0772 REMARK 3 T13: -0.0073 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.9377 L22: 2.2801 REMARK 3 L33: 1.7156 L12: 0.0787 REMARK 3 L13: -1.0869 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.1864 S12: 0.0477 S13: 0.1205 REMARK 3 S21: 0.1690 S22: -0.0620 S23: -0.4108 REMARK 3 S31: -0.2710 S32: 0.2752 S33: -0.1147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2 M NACL, AND 0.1 M REMARK 280 PHOSPHATE-CITRATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.03450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.67000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.03450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 600 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 405 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR H 56 O HOH H 401 1.87 REMARK 500 O HOH L 477 O HOH L 546 2.00 REMARK 500 N TYR H 52 O HOH H 401 2.05 REMARK 500 O HOH L 401 O HOH L 612 2.11 REMARK 500 O HOH H 545 O HOH L 566 2.11 REMARK 500 O HOH L 454 O HOH L 566 2.13 REMARK 500 O HOH L 497 O HOH L 531 2.15 REMARK 500 O HOH L 523 O HOH L 595 2.17 REMARK 500 O HOH H 459 O HOH H 581 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 33 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 LEU L 78 CA - CB - CG ANGL. DEV. = 18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -6.42 80.04 REMARK 500 SER H 53 -8.36 63.84 REMARK 500 THR L 51 -31.93 69.64 REMARK 500 MET L 95A -79.68 -33.19 REMARK 500 PRO L 141 -168.52 -79.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 95 MET L 95A -135.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 643 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH L 644 DISTANCE = 7.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 DBREF 6WJ0 H 1 216 PDB 6WJ0 6WJ0 1 216 DBREF 6WJ0 L 1 214 PDB 6WJ0 6WJ0 1 214 SEQRES 1 H 230 GLN VAL GLN LEU GLN GLN SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 230 PRO SER GLN THR LEU SER LEU THR CYS ALA ILE SER GLY SEQRES 3 H 230 ASP SER VAL SER SER ASN SER VAL ALA TRP ASN TRP ILE SEQRES 4 H 230 ARG GLN SER PRO SER ARG GLY LEU GLU TRP LEU GLY ARG SEQRES 5 H 230 THR TYR PHE ARG SER LYS TRP TYR THR ASP TYR ALA GLU SEQRES 6 H 230 SER LEU LYS SER ARG MET THR ILE ASN PRO ASP THR SER SEQRES 7 H 230 LYS ASN GLU PHE SER LEU HIS LEU LYS SER VAL THR SER SEQRES 8 H 230 ASP ASP THR ALA VAL TYR TYR CYS VAL ARG GLY ILE ILE SEQRES 9 H 230 PHE ASN TRP PRO LEU GLY GLY TRP SER PHE ASP LEU TRP SEQRES 10 H 230 GLY ARG GLY THR LEU VAL SER VAL SER SER PRO SER THR SEQRES 11 H 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 230 ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 216 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 216 SER PRO GLY ASP SER ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 216 GLN SER VAL ALA SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 216 LYS PRO GLY GLN SER PRO ARG LEU LEU ILE TYR ALA THR SEQRES 5 L 216 ILE ASN ARG ALA ALA ASP ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER GLY SER GLY THR ASP PHE ALA LEU THR ILE SER ARG SEQRES 7 L 216 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 216 PHE ASP SER SER SER MET TYR THR PHE GLY GLN GLY THR SEQRES 9 L 216 LYS LEU GLU ILE THR ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS LEU TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS HET GOL H 301 6 HET GOL L 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *456(H2 O) HELIX 1 AA1 GLU H 61 LYS H 64 5 4 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 GLY H 190 5 4 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 ALA L 30 LEU L 33 5 5 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA1 4 GLU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 MET H 67 ASP H 72 -1 N ASP H 72 O GLU H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ILE H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 VAL H 32 SER H 40 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 PHE H 52A-1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 TRP H 55 TYR H 59 -1 O ASP H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ILE H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 TRP H 100E TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 3 LEU L 4 SER L 7 0 SHEET 2 AA7 3 ALA L 19 VAL L 29 -1 O SER L 22 N SER L 7 SHEET 3 AA7 3 PHE L 62 ILE L 75 -1 O THR L 69 N ALA L 25 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 PHE L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 6 ALA L 34 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 PHE L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 TYR L 96 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 LEU L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.11 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 TRP H 100 PRO H 100A 0 6.82 CISPEP 2 PHE H 146 PRO H 147 0 -7.66 CISPEP 3 GLU H 148 PRO H 149 0 -1.14 CISPEP 4 SER L 7 PRO L 8 0 -7.41 CISPEP 5 TYR L 140 PRO L 141 0 2.70 SITE 1 AC1 9 ASP H 27 SER H 31 SER H 31B ARG H 94 SITE 2 AC1 9 HOH H 412 HOH H 458 HOH H 534 ARG L 108 SITE 3 AC1 9 ASP L 170 SITE 1 AC2 12 PHE H 166 PRO H 167 VAL H 169 SER H 177 SITE 2 AC2 12 LEU H 178 SER H 179 GLN L 160 GLU L 161 SITE 3 AC2 12 SER L 162 SER L 176 THR L 178 HOH L 422 CRYST1 60.441 80.069 107.340 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009316 0.00000