HEADER ISOMERASE 13-APR-20 6WJ9 TITLE UDP-GLCNAC C4-EPIMERASE MUTANT S121A/Y146F FROM PSEUDOMONAS PROTEGENS TITLE 2 IN COMPLEX WITH UDP-GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PELX; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PROTEGENS; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: PF-5; SOURCE 5 GENE: PFL_2971; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SHORT CHAIN DEHYDROGENASE, ISOMERASE, COMPLEX, NAD DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR L.S.MARMONT,R.J.WILLAMS,J.C.WHITNEY,G.B.WHITFIELD,H.ROBINSON, AUTHOR 2 M.R.PARSEK,M.NITZ,J.J.HARRISON,P.L.HOWELL REVDAT 4 18-OCT-23 6WJ9 1 REMARK REVDAT 3 02-SEP-20 6WJ9 1 JRNL REVDAT 2 15-JUL-20 6WJ9 1 JRNL REVDAT 1 08-JUL-20 6WJ9 0 JRNL AUTH L.S.MARMONT,G.B.WHITFIELD,R.PFOH,R.J.WILLIAMS,T.E.RANDALL, JRNL AUTH 2 A.OSTASZEWSKI,E.RAZVI,R.A.GROVES,H.ROBINSON,M.NITZ, JRNL AUTH 3 M.R.PARSEK,I.A.LEWIS,J.C.WHITNEY,J.J.HARRISON,P.L.HOWELL JRNL TITL PELX IS A UDP-N-ACETYLGLUCOSAMINE C4-EPIMERASE INVOLVED IN JRNL TITL 2 PEL POLYSACCHARIDE-DEPENDENT BIOFILM FORMATION. JRNL REF J.BIOL.CHEM. V. 295 11949 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32601062 JRNL DOI 10.1074/JBC.RA120.014555 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 82655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 3828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0300 - 6.3200 1.00 2915 145 0.1523 0.1532 REMARK 3 2 6.3200 - 5.0200 1.00 2911 147 0.1505 0.1805 REMARK 3 3 5.0200 - 4.3800 1.00 2966 132 0.1172 0.1540 REMARK 3 4 4.3800 - 3.9800 1.00 2927 143 0.1313 0.1484 REMARK 3 5 3.9800 - 3.7000 1.00 2955 143 0.1420 0.1812 REMARK 3 6 3.7000 - 3.4800 1.00 2937 139 0.1500 0.1927 REMARK 3 7 3.4800 - 3.3100 1.00 2891 148 0.1570 0.2074 REMARK 3 8 3.3100 - 3.1600 1.00 2971 137 0.1598 0.1870 REMARK 3 9 3.1600 - 3.0400 1.00 2943 127 0.1578 0.1972 REMARK 3 10 3.0400 - 2.9400 1.00 2933 144 0.1641 0.1958 REMARK 3 11 2.9400 - 2.8400 1.00 2906 159 0.1646 0.2275 REMARK 3 12 2.8400 - 2.7600 1.00 2954 131 0.1642 0.2260 REMARK 3 13 2.7600 - 2.6900 1.00 2937 139 0.1710 0.2422 REMARK 3 14 2.6900 - 2.6200 1.00 2893 157 0.1586 0.2134 REMARK 3 15 2.6200 - 2.5600 1.00 2979 143 0.1615 0.2126 REMARK 3 16 2.5600 - 2.5100 1.00 2883 143 0.1602 0.1826 REMARK 3 17 2.5100 - 2.4600 1.00 2991 145 0.1583 0.1929 REMARK 3 18 2.4600 - 2.4100 1.00 2915 143 0.1675 0.2140 REMARK 3 19 2.4100 - 2.3700 1.00 2888 128 0.1709 0.2250 REMARK 3 20 2.3700 - 2.3300 1.00 2911 148 0.1809 0.2504 REMARK 3 21 2.3300 - 2.2900 1.00 2971 122 0.1723 0.2299 REMARK 3 22 2.2900 - 2.2600 1.00 2962 155 0.1699 0.2277 REMARK 3 23 2.2600 - 2.2200 1.00 2901 138 0.1753 0.2497 REMARK 3 24 2.2200 - 2.1900 1.00 2881 157 0.1799 0.2182 REMARK 3 25 2.1900 - 2.1600 1.00 2956 135 0.1922 0.2100 REMARK 3 26 2.1600 - 2.1400 1.00 2912 130 0.1957 0.2438 REMARK 3 27 2.1400 - 2.1100 0.92 2638 150 0.2198 0.2552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4773 REMARK 3 ANGLE : 0.863 6516 REMARK 3 CHIRALITY : 0.049 758 REMARK 3 PLANARITY : 0.005 842 REMARK 3 DIHEDRAL : 14.631 2819 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2316 21.1451 -4.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.1871 REMARK 3 T33: 0.2875 T12: -0.0617 REMARK 3 T13: -0.0222 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.7326 L22: 1.5566 REMARK 3 L33: 1.3783 L12: -0.6050 REMARK 3 L13: 0.6511 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.1648 S13: 0.2480 REMARK 3 S21: 0.0564 S22: -0.0551 S23: -0.4171 REMARK 3 S31: -0.2269 S32: 0.2127 S33: 0.0416 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7799 14.1493 13.7208 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.1758 REMARK 3 T33: 0.2443 T12: 0.0285 REMARK 3 T13: -0.0986 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 3.3800 L22: 1.4464 REMARK 3 L33: 2.8604 L12: -0.2976 REMARK 3 L13: -0.7672 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.1340 S12: -0.3423 S13: 0.2649 REMARK 3 S21: 0.3453 S22: 0.0583 S23: -0.1827 REMARK 3 S31: -0.2352 S32: 0.0305 S33: 0.0388 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6777 30.1609 -25.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.2797 REMARK 3 T33: 0.1893 T12: 0.1051 REMARK 3 T13: -0.0673 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.8384 L22: 2.6820 REMARK 3 L33: 2.2052 L12: 0.4593 REMARK 3 L13: 0.4499 L23: -0.3486 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: 0.0473 S13: 0.0989 REMARK 3 S21: -0.4473 S22: -0.0207 S23: 0.3418 REMARK 3 S31: -0.5270 S32: -0.4032 S33: 0.0833 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2120 25.4281 -18.9160 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.1787 REMARK 3 T33: 0.1351 T12: 0.0019 REMARK 3 T13: -0.0081 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 5.1477 L22: 2.2768 REMARK 3 L33: 3.0516 L12: -0.8809 REMARK 3 L13: -0.5636 L23: -0.6471 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.2860 S13: 0.0426 REMARK 3 S21: -0.2753 S22: -0.1520 S23: -0.2179 REMARK 3 S31: -0.0279 S32: 0.1938 S33: 0.1977 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5920 10.1319 -16.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.2046 REMARK 3 T33: 0.1209 T12: 0.0146 REMARK 3 T13: 0.0020 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.0103 L22: 4.5773 REMARK 3 L33: 2.4016 L12: 0.4828 REMARK 3 L13: 1.3014 L23: -0.2708 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.1283 S13: -0.3041 REMARK 3 S21: -0.0127 S22: -0.0585 S23: -0.0470 REMARK 3 S31: 0.2196 S32: 0.0243 S33: 0.0269 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5464 17.8273 -13.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1937 REMARK 3 T33: 0.1402 T12: 0.0223 REMARK 3 T13: -0.0125 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.6057 L22: 2.6416 REMARK 3 L33: 3.3806 L12: -0.0428 REMARK 3 L13: -0.1056 L23: 1.4454 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.0441 S13: -0.0461 REMARK 3 S21: 0.0095 S22: -0.0698 S23: 0.1366 REMARK 3 S31: -0.0026 S32: -0.2418 S33: 0.0858 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7699 10.6498 -32.0235 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1766 REMARK 3 T33: 0.1919 T12: -0.0457 REMARK 3 T13: -0.0430 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.8510 L22: 2.0425 REMARK 3 L33: 4.1457 L12: -1.0822 REMARK 3 L13: -1.1078 L23: 2.1363 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.0526 S13: 0.0092 REMARK 3 S21: -0.2265 S22: -0.0260 S23: 0.0590 REMARK 3 S31: -0.2021 S32: -0.1348 S33: -0.0433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3696 2.3129 -45.9603 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.1532 REMARK 3 T33: 0.1803 T12: -0.0633 REMARK 3 T13: -0.0278 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.3326 L22: 5.0709 REMARK 3 L33: 8.7786 L12: -0.6054 REMARK 3 L13: -0.5275 L23: 0.4418 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0830 S13: -0.0450 REMARK 3 S21: -0.5481 S22: -0.0359 S23: 0.2506 REMARK 3 S31: -0.1637 S32: 0.0577 S33: 0.0355 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7006 1.9517 -27.7127 REMARK 3 T TENSOR REMARK 3 T11: 0.2988 T22: 0.4136 REMARK 3 T33: 0.2854 T12: -0.0657 REMARK 3 T13: -0.0724 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.0996 L22: 1.9063 REMARK 3 L33: 5.1540 L12: -1.7921 REMARK 3 L13: -1.6886 L23: 1.8578 REMARK 3 S TENSOR REMARK 3 S11: 0.2046 S12: -0.5003 S13: 0.0219 REMARK 3 S21: 0.1506 S22: 0.1778 S23: -0.3423 REMARK 3 S31: 0.0309 S32: 1.1083 S33: -0.4193 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 285 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8628 7.4004 -29.7883 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.3600 REMARK 3 T33: 0.3453 T12: -0.0212 REMARK 3 T13: -0.0696 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.3382 L22: 0.9829 REMARK 3 L33: 7.7765 L12: 0.0977 REMARK 3 L13: -2.0022 L23: 0.8630 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0743 S13: -0.3177 REMARK 3 S21: -0.1364 S22: -0.1479 S23: 0.3568 REMARK 3 S31: 0.4603 S32: -1.0037 S33: 0.1383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000231022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1SB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 4000, 0.1 M SODIUM CITRATE PH REMARK 280 5.6, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 62.09750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.74350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.09750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.74350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 686 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CE NZ REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 141 64.23 -153.04 REMARK 500 GLU A 167 77.09 -118.36 REMARK 500 PHE A 174 -140.64 -88.64 REMARK 500 MET B 46 102.81 -58.38 REMARK 500 ALA B 79 157.91 179.53 REMARK 500 PHE B 98 -46.34 -130.60 REMARK 500 SER B 141 64.61 -153.89 REMARK 500 PHE B 174 -134.24 -89.06 REMARK 500 ARG B 180 -2.11 80.41 REMARK 500 VAL B 242 79.59 -111.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UD1 A 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 B 402 DBREF 6WJ9 A 1 310 UNP Q4KCF6 Q4KCF6_PSEF5 1 310 DBREF 6WJ9 B 1 310 UNP Q4KCF6 Q4KCF6_PSEF5 1 310 SEQADV 6WJ9 ALA A 121 UNP Q4KCF6 SER 121 ENGINEERED MUTATION SEQADV 6WJ9 PHE A 146 UNP Q4KCF6 TYR 146 ENGINEERED MUTATION SEQADV 6WJ9 SER A 232 UNP Q4KCF6 CYS 232 ENGINEERED MUTATION SEQADV 6WJ9 ALA B 121 UNP Q4KCF6 SER 121 ENGINEERED MUTATION SEQADV 6WJ9 PHE B 146 UNP Q4KCF6 TYR 146 ENGINEERED MUTATION SEQADV 6WJ9 SER B 232 UNP Q4KCF6 CYS 232 ENGINEERED MUTATION SEQRES 1 A 310 MET SER ALA GLU ARG ILE LEU VAL THR GLY GLY ALA GLY SEQRES 2 A 310 PHE ILE GLY SER HIS LEU VAL ASP ALA LEU LEU ALA LYS SEQRES 3 A 310 GLY TYR ALA VAL ARG VAL LEU ASP ASP LEU SER THR GLY SEQRES 4 A 310 LYS VAL GLY ASN LEU PRO MET GLY ASP ALA GLY LEU GLU SEQRES 5 A 310 LEU LEU VAL GLY ASP ALA ALA ASP ALA ALA LEU LEU ALA SEQRES 6 A 310 ASP ALA VAL GLN GLY CYS ASP ALA VAL VAL HIS LEU ALA SEQRES 7 A 310 ALA VAL ALA SER VAL GLN ALA SER VAL GLU ASP PRO VAL SEQRES 8 A 310 ALA THR HIS GLN SER ASN PHE ILE ALA THR LEU ARG LEU SEQRES 9 A 310 CYS GLU ALA MET THR ALA ALA GLY ILE ARG ARG VAL VAL SEQRES 10 A 310 PHE ALA SER ALA ALA ALA VAL TYR GLY ASN ASN GLY GLU SEQRES 11 A 310 GLY THR PRO ILE ALA GLU ASP THR PRO LYS SER PRO LEU SEQRES 12 A 310 THR PRO PHE ALA ALA ASP LYS LEU ALA SER GLU TYR TYR SEQRES 13 A 310 LEU ASP PHE TYR ARG ARG GLN HIS GLY LEU GLU PRO VAL SEQRES 14 A 310 ILE LEU ARG PHE PHE ASN ILE PHE GLY PRO ARG GLN ASP SEQRES 15 A 310 PRO SER SER PRO TYR SER GLY VAL ILE SER ILE PHE SER SEQRES 16 A 310 GLU ARG ALA LYS ALA GLY ARG PRO ILE THR LEU PHE GLY SEQRES 17 A 310 ASP GLY GLY GLN THR ARG ASP PHE VAL TYR VAL ALA ASP SEQRES 18 A 310 LEU VAL LYS ILE LEU VAL GLN GLY LEU GLU SER PRO ALA SEQRES 19 A 310 PRO ALA ALA ASP ALA THR ASN VAL GLY LEU GLY GLY VAL SEQRES 20 A 310 THR THR LEU ASN ASP LEU ILE GLY ALA LEU GLN GLN ILE SEQRES 21 A 310 SER GLY LYS PRO LEU GLN VAL SER HIS GLY ALA THR ARG SEQRES 22 A 310 SER GLY ASP ILE ARG HIS SER LYS ALA ASP ASN ARG ARG SEQRES 23 A 310 LEU ARG GLU ARG PHE ASP LEU GLY THR PRO SER SER LEU SEQRES 24 A 310 ALA GLU GLY LEU GLU ARG LEU TYR ARG SER LEU SEQRES 1 B 310 MET SER ALA GLU ARG ILE LEU VAL THR GLY GLY ALA GLY SEQRES 2 B 310 PHE ILE GLY SER HIS LEU VAL ASP ALA LEU LEU ALA LYS SEQRES 3 B 310 GLY TYR ALA VAL ARG VAL LEU ASP ASP LEU SER THR GLY SEQRES 4 B 310 LYS VAL GLY ASN LEU PRO MET GLY ASP ALA GLY LEU GLU SEQRES 5 B 310 LEU LEU VAL GLY ASP ALA ALA ASP ALA ALA LEU LEU ALA SEQRES 6 B 310 ASP ALA VAL GLN GLY CYS ASP ALA VAL VAL HIS LEU ALA SEQRES 7 B 310 ALA VAL ALA SER VAL GLN ALA SER VAL GLU ASP PRO VAL SEQRES 8 B 310 ALA THR HIS GLN SER ASN PHE ILE ALA THR LEU ARG LEU SEQRES 9 B 310 CYS GLU ALA MET THR ALA ALA GLY ILE ARG ARG VAL VAL SEQRES 10 B 310 PHE ALA SER ALA ALA ALA VAL TYR GLY ASN ASN GLY GLU SEQRES 11 B 310 GLY THR PRO ILE ALA GLU ASP THR PRO LYS SER PRO LEU SEQRES 12 B 310 THR PRO PHE ALA ALA ASP LYS LEU ALA SER GLU TYR TYR SEQRES 13 B 310 LEU ASP PHE TYR ARG ARG GLN HIS GLY LEU GLU PRO VAL SEQRES 14 B 310 ILE LEU ARG PHE PHE ASN ILE PHE GLY PRO ARG GLN ASP SEQRES 15 B 310 PRO SER SER PRO TYR SER GLY VAL ILE SER ILE PHE SER SEQRES 16 B 310 GLU ARG ALA LYS ALA GLY ARG PRO ILE THR LEU PHE GLY SEQRES 17 B 310 ASP GLY GLY GLN THR ARG ASP PHE VAL TYR VAL ALA ASP SEQRES 18 B 310 LEU VAL LYS ILE LEU VAL GLN GLY LEU GLU SER PRO ALA SEQRES 19 B 310 PRO ALA ALA ASP ALA THR ASN VAL GLY LEU GLY GLY VAL SEQRES 20 B 310 THR THR LEU ASN ASP LEU ILE GLY ALA LEU GLN GLN ILE SEQRES 21 B 310 SER GLY LYS PRO LEU GLN VAL SER HIS GLY ALA THR ARG SEQRES 22 B 310 SER GLY ASP ILE ARG HIS SER LYS ALA ASP ASN ARG ARG SEQRES 23 B 310 LEU ARG GLU ARG PHE ASP LEU GLY THR PRO SER SER LEU SEQRES 24 B 310 ALA GLU GLY LEU GLU ARG LEU TYR ARG SER LEU HET NAD A 401 44 HET UD1 A 402 26 HET NAD B 401 44 HET UD1 B 402 39 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 UD1 2(C17 H27 N3 O17 P2) FORMUL 7 HOH *450(H2 O) HELIX 1 AA1 GLY A 13 LYS A 26 1 14 HELIX 2 AA2 LYS A 40 LEU A 44 5 5 HELIX 3 AA3 ASP A 60 GLN A 69 1 10 HELIX 4 AA4 SER A 82 ASP A 89 1 8 HELIX 5 AA5 ASP A 89 PHE A 98 1 10 HELIX 6 AA6 PHE A 98 GLY A 112 1 15 HELIX 7 AA7 ALA A 123 GLY A 126 5 4 HELIX 8 AA8 THR A 144 GLY A 165 1 22 HELIX 9 AA9 GLY A 189 ALA A 200 1 12 HELIX 10 AB1 VAL A 219 SER A 232 1 14 HELIX 11 AB2 LEU A 250 GLY A 262 1 13 HELIX 12 AB3 ASN A 284 PHE A 291 1 8 HELIX 13 AB4 SER A 298 SER A 309 1 12 HELIX 14 AB5 GLY B 13 LYS B 26 1 14 HELIX 15 AB6 LYS B 40 LEU B 44 5 5 HELIX 16 AB7 ASP B 60 VAL B 68 1 9 HELIX 17 AB8 SER B 82 ASP B 89 1 8 HELIX 18 AB9 ASP B 89 PHE B 98 1 10 HELIX 19 AC1 PHE B 98 GLY B 112 1 15 HELIX 20 AC2 ALA B 123 GLY B 126 5 4 HELIX 21 AC3 THR B 144 GLY B 165 1 22 HELIX 22 AC4 GLY B 189 GLY B 201 1 13 HELIX 23 AC5 VAL B 219 SER B 232 1 14 HELIX 24 AC6 LEU B 250 GLY B 262 1 13 HELIX 25 AC7 ASN B 284 PHE B 291 1 8 HELIX 26 AC8 SER B 298 LEU B 310 1 13 SHEET 1 AA1 7 LEU A 51 VAL A 55 0 SHEET 2 AA1 7 ALA A 29 ASP A 34 1 N VAL A 32 O GLU A 52 SHEET 3 AA1 7 ARG A 5 THR A 9 1 N VAL A 8 O ARG A 31 SHEET 4 AA1 7 ALA A 73 HIS A 76 1 O VAL A 75 N LEU A 7 SHEET 5 AA1 7 ARG A 115 ALA A 121 1 O VAL A 117 N HIS A 76 SHEET 6 AA1 7 GLU A 167 PHE A 173 1 O VAL A 169 N PHE A 118 SHEET 7 AA1 7 THR A 240 VAL A 242 1 O VAL A 242 N ARG A 172 SHEET 1 AA2 2 PRO A 133 ILE A 134 0 SHEET 2 AA2 2 LYS A 281 ALA A 282 1 O LYS A 281 N ILE A 134 SHEET 1 AA3 2 ASN A 175 PHE A 177 0 SHEET 2 AA3 2 PHE A 216 TYR A 218 1 O VAL A 217 N ASN A 175 SHEET 1 AA4 2 ILE A 204 PHE A 207 0 SHEET 2 AA4 2 VAL A 267 GLY A 270 1 O GLY A 270 N LEU A 206 SHEET 1 AA5 2 THR A 213 ARG A 214 0 SHEET 2 AA5 2 THR A 248 THR A 249 -1 O THR A 248 N ARG A 214 SHEET 1 AA6 7 LEU B 51 VAL B 55 0 SHEET 2 AA6 7 ALA B 29 ASP B 34 1 N VAL B 32 O LEU B 54 SHEET 3 AA6 7 ARG B 5 THR B 9 1 N VAL B 8 O ARG B 31 SHEET 4 AA6 7 ALA B 73 HIS B 76 1 O VAL B 75 N LEU B 7 SHEET 5 AA6 7 ARG B 115 ALA B 121 1 O VAL B 117 N HIS B 76 SHEET 6 AA6 7 GLU B 167 PHE B 173 1 O LEU B 171 N SER B 120 SHEET 7 AA6 7 THR B 240 VAL B 242 1 O VAL B 242 N ARG B 172 SHEET 1 AA7 2 PRO B 133 ILE B 134 0 SHEET 2 AA7 2 LYS B 281 ALA B 282 1 O LYS B 281 N ILE B 134 SHEET 1 AA8 2 ASN B 175 PHE B 177 0 SHEET 2 AA8 2 PHE B 216 TYR B 218 1 O VAL B 217 N ASN B 175 SHEET 1 AA9 2 ILE B 204 PHE B 207 0 SHEET 2 AA9 2 VAL B 267 GLY B 270 1 O SER B 268 N ILE B 204 SHEET 1 AB1 2 THR B 213 ARG B 214 0 SHEET 2 AB1 2 THR B 248 THR B 249 -1 O THR B 248 N ARG B 214 SITE 1 AC1 35 GLY A 10 ALA A 12 GLY A 13 PHE A 14 SITE 2 AC1 35 ILE A 15 ASP A 34 ASP A 35 LEU A 36 SITE 3 AC1 35 SER A 37 THR A 38 GLY A 39 GLY A 56 SITE 4 AC1 35 ASP A 57 ALA A 58 LEU A 77 ALA A 78 SITE 5 AC1 35 ALA A 79 ALA A 81 SER A 96 ALA A 119 SITE 6 AC1 35 SER A 120 PHE A 146 LYS A 150 PHE A 173 SITE 7 AC1 35 PHE A 174 ILE A 176 HOH A 542 HOH A 568 SITE 8 AC1 35 HOH A 569 HOH A 588 HOH A 591 HOH A 592 SITE 9 AC1 35 HOH A 605 HOH A 614 HOH A 633 SITE 1 AC2 19 ASN A 175 GLY A 189 VAL A 190 PHE A 194 SITE 2 AC2 19 THR A 205 LEU A 206 PHE A 207 GLN A 212 SITE 3 AC2 19 ARG A 214 LEU A 250 ARG A 273 ASP A 276 SITE 4 AC2 19 HOH A 508 HOH A 509 HOH A 517 HOH A 519 SITE 5 AC2 19 HOH A 531 HOH A 574 HOH A 620 SITE 1 AC3 35 GLY B 10 ALA B 12 GLY B 13 PHE B 14 SITE 2 AC3 35 ILE B 15 ASP B 34 ASP B 35 LEU B 36 SITE 3 AC3 35 SER B 37 THR B 38 GLY B 39 GLY B 56 SITE 4 AC3 35 ASP B 57 ALA B 58 LEU B 77 ALA B 78 SITE 5 AC3 35 ALA B 79 ALA B 81 SER B 96 ALA B 119 SITE 6 AC3 35 SER B 120 PHE B 146 LYS B 150 PHE B 173 SITE 7 AC3 35 PHE B 174 ILE B 176 HOH B 535 HOH B 544 SITE 8 AC3 35 HOH B 602 HOH B 603 HOH B 609 HOH B 616 SITE 9 AC3 35 HOH B 617 HOH B 634 HOH B 637 SITE 1 AC4 27 VAL B 83 GLN B 84 ASN B 175 TYR B 187 SITE 2 AC4 27 GLY B 189 VAL B 190 PHE B 194 THR B 205 SITE 3 AC4 27 LEU B 206 PHE B 207 GLN B 212 ARG B 214 SITE 4 AC4 27 LEU B 250 ARG B 273 ASP B 276 HOH B 506 SITE 5 AC4 27 HOH B 514 HOH B 517 HOH B 521 HOH B 524 SITE 6 AC4 27 HOH B 534 HOH B 542 HOH B 595 HOH B 608 SITE 7 AC4 27 HOH B 621 HOH B 625 HOH B 652 CRYST1 124.195 75.487 79.271 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012615 0.00000