HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 14-APR-20 6WJY
TITLE HUMAN IDO1 IN COMPLEX WITH COMPOUND 4-A
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: INDOLEAMINE 2,3-DIOXYGENASE 1;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: N-TERMINAL TRUNCATED;
COMPND 5 SYNONYM: IDO-1,INDOLEAMINE-PYRROLE 2,3-DIOXYGENASE;
COMPND 6 EC: 1.13.11.52;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: IDO1, IDO, INDO;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS INDOLEAMINE DIOXYGENASE, HEME, INHIBITOR, OXIDOREDUCTASE,
KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR C.A.LESBURG,A.LAMMENS,L.NEUMANN
REVDAT 4 06-NOV-24 6WJY 1 REMARK
REVDAT 3 03-APR-24 6WJY 1 REMARK
REVDAT 2 09-SEP-20 6WJY 1 JRNL
REVDAT 1 26-AUG-20 6WJY 0
JRNL AUTH Q.PU,H.ZHANG,L.GUO,M.CHENG,A.C.DOTY,H.FERGUSON,X.FRADERA,
JRNL AUTH 2 C.A.LESBURG,M.A.MCGOWAN,J.R.MILLER,P.GEDA,X.SONG,K.OTTE,
JRNL AUTH 3 N.SCIAMMETTA,N.SOLBAN,W.YU,D.L.SLOMAN,H.ZHOU,A.LAMMENS,
JRNL AUTH 4 L.NEUMANN,D.J.BENNETT,A.PASTERNAK,Y.HAN
JRNL TITL DISCOVERY OF POTENT AND ORALLY AVAILABLE
JRNL TITL 2 BICYCLO[1.1.1]PENTANE-DERIVED INDOLEAMINE-2,3-DIOXYGENASE 1
JRNL TITL 3 (IDO1) INHIBITORS.
JRNL REF ACS MED.CHEM.LETT. V. 11 1548 2020
JRNL REFN ISSN 1948-5875
JRNL PMID 32832022
JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00195
REMARK 2
REMARK 2 RESOLUTION. 1.91 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0005
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.52
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5
REMARK 3 NUMBER OF REFLECTIONS : 73640
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.180
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.208
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800
REMARK 3 FREE R VALUE TEST SET COUNT : 2093
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96
REMARK 3 REFLECTION IN BIN (WORKING SET) : 5478
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14
REMARK 3 BIN R VALUE (WORKING SET) : 0.2930
REMARK 3 BIN FREE R VALUE SET COUNT : 154
REMARK 3 BIN FREE R VALUE : 0.3410
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5946
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 54
REMARK 3 SOLVENT ATOMS : 492
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.66
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.75000
REMARK 3 B22 (A**2) : 0.16000
REMARK 3 B33 (A**2) : 0.59000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.131
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.101
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6310 ; 0.009 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): 5739 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8597 ; 1.195 ; 1.975
REMARK 3 BOND ANGLES OTHERS (DEGREES): 13355 ; 0.946 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 5.323 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;36.414 ;24.234
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;11.978 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;11.215 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.067 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7125 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1289 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1324 ; 0.189 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5633 ; 0.141 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3121 ; 0.161 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): 3163 ; 0.077 ; 0.200
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 426 ; 0.097 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.131 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.189 ; 0.200
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.122 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 10 A 107
REMARK 3 ORIGIN FOR THE GROUP (A): 41.831 42.824 17.880
REMARK 3 T TENSOR
REMARK 3 T11: 0.0335 T22: 0.3678
REMARK 3 T33: 0.3318 T12: -0.0426
REMARK 3 T13: 0.0100 T23: -0.0658
REMARK 3 L TENSOR
REMARK 3 L11: 3.1077 L22: 2.4711
REMARK 3 L33: 2.7422 L12: -0.6340
REMARK 3 L13: -1.4263 L23: 0.9309
REMARK 3 S TENSOR
REMARK 3 S11: -0.0837 S12: 0.2806 S13: -0.4032
REMARK 3 S21: 0.0209 S22: -0.2635 S23: 0.5347
REMARK 3 S31: 0.2664 S32: -0.7035 S33: 0.3472
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 108 A 335
REMARK 3 ORIGIN FOR THE GROUP (A): 61.160 44.116 12.711
REMARK 3 T TENSOR
REMARK 3 T11: 0.0160 T22: 0.1225
REMARK 3 T33: 0.1438 T12: 0.0102
REMARK 3 T13: -0.0039 T23: -0.0034
REMARK 3 L TENSOR
REMARK 3 L11: 2.6907 L22: 1.4912
REMARK 3 L33: 2.2637 L12: -0.4437
REMARK 3 L13: -1.2998 L23: 0.6717
REMARK 3 S TENSOR
REMARK 3 S11: -0.0751 S12: 0.0559 S13: -0.1807
REMARK 3 S21: -0.0150 S22: -0.1101 S23: 0.0478
REMARK 3 S31: 0.1436 S32: -0.1286 S33: 0.1852
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 336 A 401
REMARK 3 ORIGIN FOR THE GROUP (A): 71.103 53.365 20.380
REMARK 3 T TENSOR
REMARK 3 T11: 0.0130 T22: 0.1348
REMARK 3 T33: 0.1574 T12: -0.0107
REMARK 3 T13: -0.0294 T23: -0.0140
REMARK 3 L TENSOR
REMARK 3 L11: 3.2979 L22: 4.7549
REMARK 3 L33: 3.4349 L12: -1.9501
REMARK 3 L13: -0.4942 L23: 1.9269
REMARK 3 S TENSOR
REMARK 3 S11: -0.0175 S12: -0.3959 S13: 0.2111
REMARK 3 S21: 0.1429 S22: 0.1381 S23: -0.1969
REMARK 3 S31: -0.0199 S32: 0.2928 S33: -0.1206
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 11 B 107
REMARK 3 ORIGIN FOR THE GROUP (A): 91.045 21.970 26.039
REMARK 3 T TENSOR
REMARK 3 T11: 0.0273 T22: 0.1814
REMARK 3 T33: 0.2232 T12: -0.0454
REMARK 3 T13: -0.0192 T23: 0.0893
REMARK 3 L TENSOR
REMARK 3 L11: 3.6303 L22: 1.8602
REMARK 3 L33: 1.4075 L12: 0.5480
REMARK 3 L13: 0.8559 L23: 0.2097
REMARK 3 S TENSOR
REMARK 3 S11: -0.1849 S12: 0.4130 S13: 0.0829
REMARK 3 S21: -0.1307 S22: 0.0528 S23: -0.2638
REMARK 3 S31: -0.1488 S32: 0.4039 S33: 0.1320
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 108 B 335
REMARK 3 ORIGIN FOR THE GROUP (A): 71.757 16.180 22.746
REMARK 3 T TENSOR
REMARK 3 T11: 0.0127 T22: 0.1040
REMARK 3 T33: 0.1474 T12: -0.0198
REMARK 3 T13: -0.0153 T23: 0.0454
REMARK 3 L TENSOR
REMARK 3 L11: 2.6422 L22: 1.0779
REMARK 3 L33: 1.5851 L12: 0.8557
REMARK 3 L13: 1.2192 L23: 0.2634
REMARK 3 S TENSOR
REMARK 3 S11: -0.1705 S12: 0.1550 S13: 0.0826
REMARK 3 S21: -0.0716 S22: 0.0208 S23: 0.0425
REMARK 3 S31: -0.0875 S32: 0.0700 S33: 0.1496
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 336 B 403
REMARK 3 ORIGIN FOR THE GROUP (A): 62.200 12.380 34.809
REMARK 3 T TENSOR
REMARK 3 T11: 0.0816 T22: 0.1680
REMARK 3 T33: 0.1697 T12: -0.0312
REMARK 3 T13: 0.0310 T23: 0.0084
REMARK 3 L TENSOR
REMARK 3 L11: 5.2005 L22: 1.7620
REMARK 3 L33: 4.1716 L12: -1.3882
REMARK 3 L13: 2.9835 L23: -1.1212
REMARK 3 S TENSOR
REMARK 3 S11: -0.1320 S12: -0.6814 S13: 0.0982
REMARK 3 S21: 0.3562 S22: -0.0189 S23: 0.0546
REMARK 3 S31: -0.1849 S32: -0.4740 S33: 0.1509
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS
REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS
REMARK 4
REMARK 4 6WJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-20.
REMARK 100 THE DEPOSITION ID IS D_1000248463.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-SEP-17
REMARK 200 TEMPERATURE (KELVIN) : 100.000
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75740
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910
REMARK 200 RESOLUTION RANGE LOW (A) : 74.520
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5
REMARK 200 DATA REDUNDANCY : 3.800
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.03800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2
REMARK 200 DATA REDUNDANCY IN SHELL : 3.80
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.42700
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED COMPLEX
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.68
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM TRIS, 16% (W/V) PEG4000, 0.2 M
REMARK 280 NH4OAC, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.56400
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.31450
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.71650
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.31450
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.56400
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.71650
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LYS A 363
REMARK 465 GLU A 364
REMARK 465 ASN A 365
REMARK 465 LYS A 366
REMARK 465 THR A 367
REMARK 465 SER A 368
REMARK 465 GLU A 369
REMARK 465 ASP A 370
REMARK 465 PRO A 371
REMARK 465 SER A 372
REMARK 465 LYS A 373
REMARK 465 LEU A 374
REMARK 465 GLU A 375
REMARK 465 ALA A 376
REMARK 465 LYS A 377
REMARK 465 GLY A 378
REMARK 465 THR A 379
REMARK 465 GLU A 402
REMARK 465 GLY A 403
REMARK 465 MET B 10
REMARK 465 PRO B 362
REMARK 465 LYS B 363
REMARK 465 GLU B 364
REMARK 465 ASN B 365
REMARK 465 LYS B 366
REMARK 465 THR B 367
REMARK 465 SER B 368
REMARK 465 GLU B 369
REMARK 465 ASP B 370
REMARK 465 PRO B 371
REMARK 465 SER B 372
REMARK 465 LYS B 373
REMARK 465 LEU B 374
REMARK 465 GLU B 375
REMARK 465 ALA B 376
REMARK 465 LYS B 377
REMARK 465 GLY B 378
REMARK 465 THR B 379
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 MET A 10 CG SD CE
REMARK 480 LYS A 13 CE NZ
REMARK 480 LYS A 44 CE NZ
REMARK 480 LYS A 101 NZ
REMARK 480 LYS A 116 NZ
REMARK 480 LYS A 117 NZ
REMARK 480 LYS A 135 CE NZ
REMARK 480 GLU A 146 CD OE1 OE2
REMARK 480 LYS A 186 CD CE NZ
REMARK 480 LYS A 209 CE NZ
REMARK 480 LYS A 224 CE NZ
REMARK 480 GLU A 254 CG CD OE1 OE2
REMARK 480 GLU A 318 CD OE1 OE2
REMARK 480 LYS A 337 NZ
REMARK 480 GLN A 361 CD OE1 NE2
REMARK 480 LYS A 397 NZ
REMARK 480 LYS A 401 NZ
REMARK 480 ILE B 11 CD1
REMARK 480 LYS B 13 CE NZ
REMARK 480 GLU B 14 CD OE1 OE2
REMARK 480 LYS B 44 CE NZ
REMARK 480 GLU B 57 CD OE1 OE2
REMARK 480 LYS B 61 CE NZ
REMARK 480 LYS B 116 CE NZ
REMARK 480 LYS B 117 NZ
REMARK 480 LYS B 186 NZ
REMARK 480 LYS B 198 NZ
REMARK 480 LYS B 209 CE NZ
REMARK 480 LYS B 224 NZ
REMARK 480 LYS B 401 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 CYS B 308 CB CYS B 308 SG -0.245
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 27 67.51 38.81
REMARK 500 ASN A 27 67.91 37.30
REMARK 500 VAL A 130 -61.00 -108.68
REMARK 500 ASN A 133 57.97 -109.15
REMARK 500 VAL A 229 -69.12 -124.26
REMARK 500 ILE A 354 -55.53 -125.71
REMARK 500 ILE A 354 -54.11 -125.71
REMARK 500 ASN B 27 67.13 30.92
REMARK 500 ASN B 133 57.72 -104.13
REMARK 500 VAL B 229 -70.05 -120.53
REMARK 500 ILE B 354 -59.30 -130.25
REMARK 500 GLN B 360 52.19 -95.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 861 DISTANCE = 5.99 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue U41 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue U41 B 501
DBREF 6WJY A 11 403 UNP P14902 I23O1_HUMAN 11 403
DBREF 6WJY B 11 403 UNP P14902 I23O1_HUMAN 11 403
SEQADV 6WJY MET A 10 UNP P14902 INITIATING METHIONINE
SEQADV 6WJY MET B 10 UNP P14902 INITIATING METHIONINE
SEQRES 1 A 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY
SEQRES 2 A 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE
SEQRES 3 A 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP
SEQRES 4 A 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS
SEQRES 5 A 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS
SEQRES 6 A 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR
SEQRES 7 A 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG
SEQRES 8 A 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN
SEQRES 9 A 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR
SEQRES 10 A 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO
SEQRES 11 A 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE
SEQRES 12 A 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU
SEQRES 13 A 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE
SEQRES 14 A 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN
SEQRES 15 A 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA
SEQRES 16 A 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE
SEQRES 17 A 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU
SEQRES 18 A 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU
SEQRES 19 A 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO
SEQRES 20 A 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL
SEQRES 21 A 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR
SEQRES 22 A 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET
SEQRES 23 A 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS
SEQRES 24 A 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU
SEQRES 25 A 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA
SEQRES 26 A 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU
SEQRES 27 A 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN
SEQRES 28 A 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS
SEQRES 29 A 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN
SEQRES 30 A 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU
SEQRES 31 A 394 LEU LYS GLU GLY
SEQRES 1 B 394 MET ILE SER LYS GLU TYR HIS ILE ASP GLU GLU VAL GLY
SEQRES 2 B 394 PHE ALA LEU PRO ASN PRO GLN GLU ASN LEU PRO ASP PHE
SEQRES 3 B 394 TYR ASN ASP TRP MET PHE ILE ALA LYS HIS LEU PRO ASP
SEQRES 4 B 394 LEU ILE GLU SER GLY GLN LEU ARG GLU ARG VAL GLU LYS
SEQRES 5 B 394 LEU ASN MET LEU SER ILE ASP HIS LEU THR ASP HIS LYS
SEQRES 6 B 394 SER GLN ARG LEU ALA ARG LEU VAL LEU GLY CYS ILE THR
SEQRES 7 B 394 MET ALA TYR VAL TRP GLY LYS GLY HIS GLY ASP VAL ARG
SEQRES 8 B 394 LYS VAL LEU PRO ARG ASN ILE ALA VAL PRO TYR CYS GLN
SEQRES 9 B 394 LEU SER LYS LYS LEU GLU LEU PRO PRO ILE LEU VAL TYR
SEQRES 10 B 394 ALA ASP CYS VAL LEU ALA ASN TRP LYS LYS LYS ASP PRO
SEQRES 11 B 394 ASN LYS PRO LEU THR TYR GLU ASN MET ASP VAL LEU PHE
SEQRES 12 B 394 SER PHE ARG ASP GLY ASP CYS SER LYS GLY PHE PHE LEU
SEQRES 13 B 394 VAL SER LEU LEU VAL GLU ILE ALA ALA ALA SER ALA ILE
SEQRES 14 B 394 LYS VAL ILE PRO THR VAL PHE LYS ALA MET GLN MET GLN
SEQRES 15 B 394 GLU ARG ASP THR LEU LEU LYS ALA LEU LEU GLU ILE ALA
SEQRES 16 B 394 SER CYS LEU GLU LYS ALA LEU GLN VAL PHE HIS GLN ILE
SEQRES 17 B 394 HIS ASP HIS VAL ASN PRO LYS ALA PHE PHE SER VAL LEU
SEQRES 18 B 394 ARG ILE TYR LEU SER GLY TRP LYS GLY ASN PRO GLN LEU
SEQRES 19 B 394 SER ASP GLY LEU VAL TYR GLU GLY PHE TRP GLU ASP PRO
SEQRES 20 B 394 LYS GLU PHE ALA GLY GLY SER ALA GLY GLN SER SER VAL
SEQRES 21 B 394 PHE GLN CYS PHE ASP VAL LEU LEU GLY ILE GLN GLN THR
SEQRES 22 B 394 ALA GLY GLY GLY HIS ALA ALA GLN PHE LEU GLN ASP MET
SEQRES 23 B 394 ARG ARG TYR MET PRO PRO ALA HIS ARG ASN PHE LEU CYS
SEQRES 24 B 394 SER LEU GLU SER ASN PRO SER VAL ARG GLU PHE VAL LEU
SEQRES 25 B 394 SER LYS GLY ASP ALA GLY LEU ARG GLU ALA TYR ASP ALA
SEQRES 26 B 394 CYS VAL LYS ALA LEU VAL SER LEU ARG SER TYR HIS LEU
SEQRES 27 B 394 GLN ILE VAL THR LYS TYR ILE LEU ILE PRO ALA SER GLN
SEQRES 28 B 394 GLN PRO LYS GLU ASN LYS THR SER GLU ASP PRO SER LYS
SEQRES 29 B 394 LEU GLU ALA LYS GLY THR GLY GLY THR ASP LEU MET ASN
SEQRES 30 B 394 PHE LEU LYS THR VAL ARG SER THR THR GLU LYS SER LEU
SEQRES 31 B 394 LEU LYS GLU GLY
HET U41 A 501 27
HET U41 B 501 27
HETNAM U41 3-CHLORO-N-(3-{(2S)-1-[(4-FLUOROPHENYL)AMINO]-1-
HETNAM 2 U41 OXOPROPAN-2-YL}BICYCLO[1.1.1]PENTAN-1-YL)BENZAMIDE
FORMUL 3 U41 2(C21 H20 CL F N2 O2)
FORMUL 5 HOH *492(H2 O)
HELIX 1 AA1 SER A 12 HIS A 16 5 5
HELIX 2 AA2 PRO A 33 PHE A 35 5 3
HELIX 3 AA3 TYR A 36 HIS A 45 1 10
HELIX 4 AA4 HIS A 45 SER A 52 1 8
HELIX 5 AA5 GLN A 54 LYS A 61 1 8
HELIX 6 AA6 SER A 66 LEU A 70 5 5
HELIX 7 AA7 ASP A 72 GLY A 93 1 22
HELIX 8 AA8 PRO A 104 GLU A 119 1 16
HELIX 9 AA9 VAL A 125 VAL A 130 1 6
HELIX 10 AB1 THR A 144 GLU A 146 5 3
HELIX 11 AB2 CYS A 159 LYS A 179 1 21
HELIX 12 AB3 VAL A 180 MET A 190 1 11
HELIX 13 AB4 GLU A 192 HIS A 215 1 24
HELIX 14 AB5 GLN A 216 VAL A 221 1 6
HELIX 15 AB6 ASN A 222 VAL A 229 1 8
HELIX 16 AB7 VAL A 229 SER A 235 1 7
HELIX 17 AB8 ASN A 240 SER A 244 5 5
HELIX 18 AB9 SER A 263 SER A 267 5 5
HELIX 19 AC1 SER A 268 LEU A 277 1 10
HELIX 20 AC2 GLY A 286 ARG A 297 1 12
HELIX 21 AC3 PRO A 300 ASN A 313 1 14
HELIX 22 AC4 SER A 315 LYS A 323 1 9
HELIX 23 AC5 ASP A 325 ILE A 354 1 30
HELIX 24 AC6 ILE A 354 GLN A 361 1 8
HELIX 25 AC7 GLY A 381 LYS A 397 1 17
HELIX 26 AC8 SER B 12 HIS B 16 5 5
HELIX 27 AC9 PRO B 33 PHE B 35 5 3
HELIX 28 AD1 TYR B 36 HIS B 45 1 10
HELIX 29 AD2 HIS B 45 SER B 52 1 8
HELIX 30 AD3 GLN B 54 LEU B 62 1 9
HELIX 31 AD4 SER B 66 LEU B 70 5 5
HELIX 32 AD5 ASP B 72 GLY B 93 1 22
HELIX 33 AD6 PRO B 104 GLU B 119 1 16
HELIX 34 AD7 VAL B 125 VAL B 130 1 6
HELIX 35 AD8 THR B 144 GLU B 146 5 3
HELIX 36 AD9 CYS B 159 LYS B 179 1 21
HELIX 37 AE1 VAL B 180 MET B 190 1 11
HELIX 38 AE2 GLU B 192 HIS B 215 1 24
HELIX 39 AE3 GLN B 216 VAL B 221 1 6
HELIX 40 AE4 ASN B 222 VAL B 229 1 8
HELIX 41 AE5 VAL B 229 SER B 235 1 7
HELIX 42 AE6 ASN B 240 SER B 244 5 5
HELIX 43 AE7 SER B 263 GLN B 266 5 4
HELIX 44 AE8 SER B 267 LEU B 277 1 11
HELIX 45 AE9 GLY B 286 ARG B 296 1 11
HELIX 46 AF1 ARG B 297 MET B 299 5 3
HELIX 47 AF2 PRO B 300 ASN B 313 1 14
HELIX 48 AF3 SER B 315 LYS B 323 1 9
HELIX 49 AF4 ASP B 325 ILE B 354 1 30
HELIX 50 AF5 ILE B 354 GLN B 360 1 7
HELIX 51 AF6 GLY B 381 LYS B 397 1 17
SHEET 1 AA1 2 VAL A 102 LEU A 103 0
SHEET 2 AA1 2 VAL A 248 TYR A 249 1 O VAL A 248 N LEU A 103
SHEET 1 AA2 2 LYS A 135 LYS A 136 0
SHEET 2 AA2 2 MET A 148 ASP A 149 -1 O ASP A 149 N LYS A 135
SHEET 1 AA3 2 VAL B 102 LEU B 103 0
SHEET 2 AA3 2 VAL B 248 TYR B 249 1 O VAL B 248 N LEU B 103
SHEET 1 AA4 2 LYS B 135 LYS B 136 0
SHEET 2 AA4 2 MET B 148 ASP B 149 -1 O ASP B 149 N LYS B 135
SSBOND 1 CYS A 308 CYS B 308 1555 1555 2.03
SITE 1 AC1 13 TYR A 126 CYS A 129 VAL A 130 PHE A 163
SITE 2 AC1 13 SER A 167 ALA A 174 GLY A 262 SER A 263
SITE 3 AC1 13 ALA A 264 VAL A 269 ARG A 343 HOH A 670
SITE 4 AC1 13 HOH A 726
SITE 1 AC2 12 TYR B 126 VAL B 130 PHE B 163 SER B 167
SITE 2 AC2 12 ALA B 174 GLY B 262 SER B 263 ALA B 264
SITE 3 AC2 12 VAL B 269 ARG B 343 HOH B 698 HOH B 699
CRYST1 85.128 91.433 128.629 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011747 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010937 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007774 0.00000