HEADER LIGASE 22-APR-20 6WN2 TITLE TYROSYL T-RNA SYNTHETASE MUTANT FROM E.COLI COMPLEXED WITH TITLE 2 SULFOTYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TYRS, CR539_12835; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYRRS, SULFOTYROSINE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.G.BELTRAN,L.ZHANG REVDAT 3 06-MAR-24 6WN2 1 REMARK REVDAT 2 17-MAR-21 6WN2 1 JRNL REVDAT 1 02-SEP-20 6WN2 0 JRNL AUTH X.HE,Y.CHEN,D.G.BELTRAN,M.KELLY,B.MA,J.LAWRIE,F.WANG, JRNL AUTH 2 E.DODDS,L.ZHANG,J.GUO,W.NIU JRNL TITL FUNCTIONAL GENETIC ENCODING OF SULFOTYROSINE IN MAMMALIAN JRNL TITL 2 CELLS. JRNL REF NAT COMMUN V. 11 4820 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32973160 JRNL DOI 10.1038/S41467-020-18629-9 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 62565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -1.43000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5260 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4825 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7091 ; 1.400 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11211 ; 1.349 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 6.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;34.287 ;23.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 880 ;15.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5874 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1106 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6WN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 99.795 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.79800 REMARK 200 R SYM FOR SHELL (I) : 1.79800 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 2.2 M AMMONIUM REMARK 280 SULFATE AND 2.5-3% V/V PEG 400, VAPOR DIFFUSION, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.95200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 80.43 -153.41 REMARK 500 CYS A 116 39.72 -144.02 REMARK 500 ASP B 21 83.04 -157.57 REMARK 500 CYS B 116 35.99 -140.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 79 O REMARK 620 2 GLU A 172 OE1 115.9 REMARK 620 3 HOH A 522 O 123.5 85.7 REMARK 620 4 HOH A 575 O 83.8 127.7 124.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 408 O4 REMARK 620 2 HOH A 582 O 118.5 REMARK 620 3 HOH A 593 O 126.1 103.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 26 O REMARK 620 2 HOH B 642 O 140.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 79 O REMARK 620 2 ARG B 89 O 158.0 REMARK 620 3 GLU B 172 OE1 107.1 78.4 REMARK 620 4 HOH B 535 O 129.2 71.7 86.0 REMARK 620 5 HOH B 541 O 83.8 74.4 109.8 138.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 409 DBREF1 6WN2 A 1 322 UNP A0A3Q0MY83_ECOLX DBREF2 6WN2 A A0A3Q0MY83 1 322 DBREF1 6WN2 B 1 322 UNP A0A3Q0MY83_ECOLX DBREF2 6WN2 B A0A3Q0MY83 1 322 SEQADV 6WN2 VAL A 71 UNP A0A3Q0MY8 LEU 71 ENGINEERED MUTATION SEQADV 6WN2 PHE A 129 UNP A0A3Q0MY8 TRP 129 ENGINEERED MUTATION SEQADV 6WN2 GLY A 182 UNP A0A3Q0MY8 ASP 182 ENGINEERED MUTATION SEQADV 6WN2 VAL B 71 UNP A0A3Q0MY8 LEU 71 ENGINEERED MUTATION SEQADV 6WN2 PHE B 129 UNP A0A3Q0MY8 TRP 129 ENGINEERED MUTATION SEQADV 6WN2 GLY B 182 UNP A0A3Q0MY8 ASP 182 ENGINEERED MUTATION SEQRES 1 A 322 MET ALA SER SER ASN LEU ILE LYS GLN LEU GLN GLU ARG SEQRES 2 A 322 GLY LEU VAL ALA GLN VAL THR ASP GLU GLU ALA LEU ALA SEQRES 3 A 322 GLU ARG LEU ALA GLN GLY PRO ILE ALA LEU TYR CYS GLY SEQRES 4 A 322 PHE ASP PRO THR ALA ASP SER LEU HIS LEU GLY HIS LEU SEQRES 5 A 322 VAL PRO LEU LEU CYS LEU LYS ARG PHE GLN GLN ALA GLY SEQRES 6 A 322 HIS LYS PRO VAL ALA VAL VAL GLY GLY ALA THR GLY LEU SEQRES 7 A 322 ILE GLY ASP PRO SER PHE LYS ALA ALA GLU ARG LYS LEU SEQRES 8 A 322 ASN THR GLU GLU THR VAL GLN GLU TRP VAL ASP LYS ILE SEQRES 9 A 322 ARG LYS GLN VAL ALA PRO PHE LEU ASP PHE ASP CYS GLY SEQRES 10 A 322 GLU ASN SER ALA ILE ALA ALA ASN ASN TYR ASP PHE PHE SEQRES 11 A 322 GLY ASN MET ASN VAL LEU THR PHE LEU ARG ASP ILE GLY SEQRES 12 A 322 LYS HIS PHE SER VAL ASN GLN MET ILE ASN LYS GLU ALA SEQRES 13 A 322 VAL LYS GLN ARG LEU ASN ARG GLU ASP GLN GLY ILE SER SEQRES 14 A 322 PHE THR GLU PHE SER TYR ASN LEU LEU GLN GLY TYR GLY SEQRES 15 A 322 PHE ALA CYS LEU ASN LYS GLN TYR GLY VAL VAL LEU GLN SEQRES 16 A 322 ILE GLY GLY SER ASP GLN TRP GLY ASN ILE THR SER GLY SEQRES 17 A 322 ILE ASP LEU THR ARG ARG LEU HIS GLN ASN GLN VAL PHE SEQRES 18 A 322 GLY LEU THR VAL PRO LEU ILE THR LYS ALA ASP GLY THR SEQRES 19 A 322 LYS PHE GLY LYS THR GLU GLY GLY ALA VAL TRP LEU ASP SEQRES 20 A 322 PRO LYS LYS THR SER PRO TYR LYS PHE TYR GLN PHE TRP SEQRES 21 A 322 ILE ASN THR ALA ASP ALA ASP VAL TYR ARG PHE LEU LYS SEQRES 22 A 322 PHE PHE THR PHE MET SER ILE GLU GLU ILE ASN ALA LEU SEQRES 23 A 322 GLU GLU GLU ASP LYS ASN SER GLY LYS ALA PRO ARG ALA SEQRES 24 A 322 GLN TYR VAL LEU ALA GLU GLN VAL THR ARG LEU VAL HIS SEQRES 25 A 322 GLY GLU GLU GLY LEU GLN ALA ALA LYS ARG SEQRES 1 B 322 MET ALA SER SER ASN LEU ILE LYS GLN LEU GLN GLU ARG SEQRES 2 B 322 GLY LEU VAL ALA GLN VAL THR ASP GLU GLU ALA LEU ALA SEQRES 3 B 322 GLU ARG LEU ALA GLN GLY PRO ILE ALA LEU TYR CYS GLY SEQRES 4 B 322 PHE ASP PRO THR ALA ASP SER LEU HIS LEU GLY HIS LEU SEQRES 5 B 322 VAL PRO LEU LEU CYS LEU LYS ARG PHE GLN GLN ALA GLY SEQRES 6 B 322 HIS LYS PRO VAL ALA VAL VAL GLY GLY ALA THR GLY LEU SEQRES 7 B 322 ILE GLY ASP PRO SER PHE LYS ALA ALA GLU ARG LYS LEU SEQRES 8 B 322 ASN THR GLU GLU THR VAL GLN GLU TRP VAL ASP LYS ILE SEQRES 9 B 322 ARG LYS GLN VAL ALA PRO PHE LEU ASP PHE ASP CYS GLY SEQRES 10 B 322 GLU ASN SER ALA ILE ALA ALA ASN ASN TYR ASP PHE PHE SEQRES 11 B 322 GLY ASN MET ASN VAL LEU THR PHE LEU ARG ASP ILE GLY SEQRES 12 B 322 LYS HIS PHE SER VAL ASN GLN MET ILE ASN LYS GLU ALA SEQRES 13 B 322 VAL LYS GLN ARG LEU ASN ARG GLU ASP GLN GLY ILE SER SEQRES 14 B 322 PHE THR GLU PHE SER TYR ASN LEU LEU GLN GLY TYR GLY SEQRES 15 B 322 PHE ALA CYS LEU ASN LYS GLN TYR GLY VAL VAL LEU GLN SEQRES 16 B 322 ILE GLY GLY SER ASP GLN TRP GLY ASN ILE THR SER GLY SEQRES 17 B 322 ILE ASP LEU THR ARG ARG LEU HIS GLN ASN GLN VAL PHE SEQRES 18 B 322 GLY LEU THR VAL PRO LEU ILE THR LYS ALA ASP GLY THR SEQRES 19 B 322 LYS PHE GLY LYS THR GLU GLY GLY ALA VAL TRP LEU ASP SEQRES 20 B 322 PRO LYS LYS THR SER PRO TYR LYS PHE TYR GLN PHE TRP SEQRES 21 B 322 ILE ASN THR ALA ASP ALA ASP VAL TYR ARG PHE LEU LYS SEQRES 22 B 322 PHE PHE THR PHE MET SER ILE GLU GLU ILE ASN ALA LEU SEQRES 23 B 322 GLU GLU GLU ASP LYS ASN SER GLY LYS ALA PRO ARG ALA SEQRES 24 B 322 GLN TYR VAL LEU ALA GLU GLN VAL THR ARG LEU VAL HIS SEQRES 25 B 322 GLY GLU GLU GLY LEU GLN ALA ALA LYS ARG HET TYS A 401 17 HET PG4 A 402 13 HET PG4 A 403 13 HET PG4 A 404 13 HET NA A 405 1 HET NA A 406 1 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET TYS B 401 17 HET PG4 B 402 13 HET PG4 B 403 13 HET NA B 404 1 HET NA B 405 1 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET SO4 B 409 5 HETNAM TYS O-SULFO-L-TYROSINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 3 TYS 2(C9 H11 N O6 S) FORMUL 4 PG4 5(C8 H18 O5) FORMUL 7 NA 4(NA 1+) FORMUL 9 SO4 7(O4 S 2-) FORMUL 21 HOH *358(H2 O) HELIX 1 AA1 ASN A 5 ARG A 13 1 9 HELIX 2 AA2 ASP A 21 GLY A 32 1 12 HELIX 3 AA3 HIS A 48 GLY A 50 5 3 HELIX 4 AA4 HIS A 51 ALA A 64 1 14 HELIX 5 AA5 ALA A 75 ILE A 79 5 5 HELIX 6 AA6 THR A 93 ALA A 109 1 17 HELIX 7 AA7 PRO A 110 LEU A 112 5 3 HELIX 8 AA8 CYS A 116 SER A 120 5 5 HELIX 9 AA9 ASN A 126 GLY A 131 1 6 HELIX 10 AB1 ASN A 134 ILE A 142 1 9 HELIX 11 AB2 GLY A 143 PHE A 146 5 4 HELIX 12 AB3 SER A 147 ILE A 152 1 6 HELIX 13 AB4 LYS A 154 GLN A 159 1 6 HELIX 14 AB5 ARG A 160 ASN A 162 5 3 HELIX 15 AB6 ARG A 163 GLY A 167 5 5 HELIX 16 AB7 SER A 169 SER A 174 1 6 HELIX 17 AB8 SER A 174 GLY A 191 1 18 HELIX 18 AB9 GLN A 201 GLN A 217 1 17 HELIX 19 AC1 SER A 252 ASN A 262 1 11 HELIX 20 AC2 ALA A 264 THR A 276 1 13 HELIX 21 AC3 SER A 279 ASN A 292 1 14 HELIX 22 AC4 ARG A 298 LYS A 321 1 24 HELIX 23 AC5 LEU B 6 ARG B 13 1 8 HELIX 24 AC6 ASP B 21 GLN B 31 1 11 HELIX 25 AC7 HIS B 48 ALA B 64 1 17 HELIX 26 AC8 ALA B 75 ILE B 79 5 5 HELIX 27 AC9 THR B 93 ALA B 109 1 17 HELIX 28 AD1 PRO B 110 LEU B 112 5 3 HELIX 29 AD2 CYS B 116 SER B 120 5 5 HELIX 30 AD3 ASN B 126 GLY B 131 1 6 HELIX 31 AD4 ASN B 134 ILE B 142 1 9 HELIX 32 AD5 GLY B 143 PHE B 146 5 4 HELIX 33 AD6 SER B 147 ILE B 152 1 6 HELIX 34 AD7 LYS B 154 GLN B 159 1 6 HELIX 35 AD8 ARG B 160 ASN B 162 5 3 HELIX 36 AD9 ARG B 163 GLY B 167 5 5 HELIX 37 AE1 SER B 169 SER B 174 1 6 HELIX 38 AE2 SER B 174 GLY B 191 1 18 HELIX 39 AE3 GLN B 201 GLN B 217 1 17 HELIX 40 AE4 SER B 252 ASN B 262 1 11 HELIX 41 AE5 ALA B 264 THR B 276 1 13 HELIX 42 AE6 SER B 279 ASN B 292 1 14 HELIX 43 AE7 ARG B 298 ARG B 322 1 25 SHEET 1 AA1 6 GLN A 18 VAL A 19 0 SHEET 2 AA1 6 PHE A 221 VAL A 225 -1 O THR A 224 N GLN A 18 SHEET 3 AA1 6 VAL A 192 GLY A 198 1 N VAL A 193 O PHE A 221 SHEET 4 AA1 6 ALA A 35 PHE A 40 1 N TYR A 37 O ILE A 196 SHEET 5 AA1 6 LYS A 67 VAL A 72 1 O VAL A 71 N PHE A 40 SHEET 6 AA1 6 ILE A 122 ASN A 125 1 O ALA A 124 N VAL A 72 SHEET 1 AA2 2 LYS A 238 THR A 239 0 SHEET 2 AA2 2 GLY A 242 ALA A 243 -1 O GLY A 242 N THR A 239 SHEET 1 AA3 6 GLN B 18 VAL B 19 0 SHEET 2 AA3 6 PHE B 221 VAL B 225 -1 O THR B 224 N GLN B 18 SHEET 3 AA3 6 VAL B 192 GLY B 198 1 N VAL B 193 O PHE B 221 SHEET 4 AA3 6 ALA B 35 PHE B 40 1 N ALA B 35 O VAL B 193 SHEET 5 AA3 6 LYS B 67 VAL B 72 1 O VAL B 71 N PHE B 40 SHEET 6 AA3 6 ILE B 122 ASN B 125 1 O ALA B 124 N VAL B 72 SHEET 1 AA4 2 LYS B 238 THR B 239 0 SHEET 2 AA4 2 GLY B 242 ALA B 243 -1 O GLY B 242 N THR B 239 LINK O ILE A 79 NA NA A 406 1555 1555 2.70 LINK OE1 GLU A 172 NA NA A 406 1555 1555 2.60 LINK NA NA A 405 O4 SO4 A 408 1555 1555 2.55 LINK NA NA A 405 O HOH A 582 1555 1555 2.22 LINK NA NA A 405 O HOH A 593 1555 1555 2.88 LINK NA NA A 406 O HOH A 522 1555 1555 2.92 LINK NA NA A 406 O HOH A 575 1555 1555 3.02 LINK O ALA B 26 NA NA B 405 1555 1555 2.53 LINK O ILE B 79 NA NA B 404 1555 1555 2.71 LINK O ARG B 89 NA NA B 404 1555 1555 3.13 LINK OE1 GLU B 172 NA NA B 404 1555 1555 2.60 LINK NA NA B 404 O HOH B 535 1555 1555 2.65 LINK NA NA B 404 O HOH B 541 1555 1555 2.86 LINK NA NA B 405 O HOH B 642 1555 1555 2.71 SITE 1 AC1 17 TYR A 37 GLY A 39 PHE A 40 ASP A 41 SITE 2 AC1 17 VAL A 71 ASP A 81 ASN A 126 PHE A 129 SITE 3 AC1 17 TYR A 175 GLN A 179 GLY A 182 LEU A 186 SITE 4 AC1 17 GLN A 201 HOH A 524 HOH A 550 HOH A 568 SITE 5 AC1 17 HOH A 581 SITE 1 AC2 6 GLU A 88 GLU A 164 HOH A 528 HOH A 557 SITE 2 AC2 6 LYS B 144 SER B 147 SITE 1 AC3 4 ASP A 45 TRP A 100 TRP A 245 LYS A 250 SITE 1 AC4 6 HIS A 145 PHE A 146 SER A 147 GLN A 150 SITE 2 AC4 6 ARG A 214 HOH A 502 SITE 1 AC5 3 SO4 A 408 HOH A 582 HOH A 593 SITE 1 AC6 6 ILE A 79 ARG A 89 LEU A 91 GLU A 172 SITE 2 AC6 6 HOH A 522 HOH A 575 SITE 1 AC7 3 LYS A 85 ALA A 86 ALA A 87 SITE 1 AC8 5 LYS A 154 TRP A 202 GLY A 203 THR A 206 SITE 2 AC8 5 NA A 405 SITE 1 AC9 3 THR A 43 HIS A 48 ARG A 89 SITE 1 AD1 16 TYR B 37 GLY B 39 PHE B 40 ASP B 41 SITE 2 AD1 16 VAL B 71 ASP B 81 ASN B 126 TYR B 175 SITE 3 AD1 16 GLN B 179 GLY B 182 LEU B 186 GLN B 201 SITE 4 AD1 16 HOH B 528 HOH B 544 HOH B 587 HOH B 601 SITE 1 AD2 3 LYS A 295 TRP B 245 LYS B 250 SITE 1 AD3 11 HIS B 145 PHE B 146 SER B 147 GLN B 150 SITE 2 AD3 11 SER B 207 ASP B 210 ARG B 213 ARG B 214 SITE 3 AD3 11 HOH B 501 HOH B 524 HOH B 579 SITE 1 AD4 6 ILE B 79 ARG B 89 LEU B 91 GLU B 172 SITE 2 AD4 6 HOH B 535 HOH B 541 SITE 1 AD5 5 ASN B 5 ALA B 26 LEU B 29 ALA B 30 SITE 2 AD5 5 HOH B 642 SITE 1 AD6 4 LYS B 85 ALA B 86 ALA B 87 HOH B 507 SITE 1 AD7 5 LYS B 154 TRP B 202 THR B 206 HOH B 610 SITE 2 AD7 5 HOH B 628 SITE 1 AD8 3 HIS B 48 ARG B 89 HOH B 504 SITE 1 AD9 4 ARG B 105 LYS B 230 GLY B 233 HOH B 577 CRYST1 38.093 93.904 99.900 90.00 92.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026252 0.000000 0.001206 0.00000 SCALE2 0.000000 0.010649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010021 0.00000