HEADER TRANSFERASE 23-APR-20 6WNS TITLE THE STRUCTURE OF A COA-DEPENDENT ACYL-HOMOSERINE LACTONE SYNTHASE, TITLE 2 MESI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-HOMOSERINE-LACTONE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOINDUCER SYNTHESIS PROTEIN; COMPND 5 EC: 2.3.1.184; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM SP. ORS 3359; SOURCE 3 ORGANISM_TAXID: 408184; SOURCE 4 GENE: MPLA_2130039; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-HOMOSERINE LACTONE, COENZYME A, MESI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.-H.DONG,S.K.NAIR REVDAT 3 18-OCT-23 6WNS 1 REMARK REVDAT 2 01-JUL-20 6WNS 1 JRNL REVDAT 1 13-MAY-20 6WNS 0 JRNL AUTH S.H.DONG,M.NHU-LAM,R.NAGARAJAN,S.K.NAIR JRNL TITL STRUCTURE-GUIDED BIOCHEMICAL ANALYSIS OF QUORUM SIGNAL JRNL TITL 2 SYNTHASE SPECIFICITIES. JRNL REF ACS CHEM.BIOL. V. 15 1497 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32356962 JRNL DOI 10.1021/ACSCHEMBIO.0C00142 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.022 REMARK 3 FREE R VALUE TEST SET COUNT : 986 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76500 REMARK 3 B22 (A**2) : 0.76500 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1595 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1543 ; 0.006 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2165 ; 1.989 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3539 ; 1.481 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 7.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;32.121 ;19.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;17.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1768 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 329 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 29 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 741 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 126 ; 0.290 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 777 ; 2.922 ; 3.910 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 775 ; 2.921 ; 3.908 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 966 ; 4.033 ; 5.842 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 966 ; 4.031 ; 5.843 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 818 ; 3.492 ; 4.198 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 819 ; 3.490 ; 4.199 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1199 ; 5.211 ; 6.182 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1200 ; 5.209 ; 6.183 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7251 -19.5446 -4.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.2651 REMARK 3 T33: 0.0745 T12: 0.1942 REMARK 3 T13: 0.0628 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 4.5952 L22: 2.4774 REMARK 3 L33: 4.0539 L12: -1.0859 REMARK 3 L13: 1.1411 L23: -0.7180 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: 0.2535 S13: -0.4580 REMARK 3 S21: -0.5048 S22: -0.2202 S23: -0.0720 REMARK 3 S31: 0.7583 S32: 1.0285 S33: 0.0845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6WNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-20. REMARK 100 THE DEPOSITION ID IS D_1000248653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 1.0 REMARK 200 DATA SCALING SOFTWARE : XDS 1.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.0 REMARK 200 STARTING MODEL: PDB ENTRY 5W8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, PH 6.5, 40% REMARK 280 V/V MPD, 5% W/V PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.76950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.83650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.15425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.83650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.38475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.83650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.83650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.15425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.83650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.83650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.38475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.76950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 381 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 64 REMARK 465 ASN A 65 REMARK 465 PHE A 113 REMARK 465 ARG A 114 REMARK 465 THR A 115 REMARK 465 LYS A 116 REMARK 465 ILE A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 358 O HOH A 376 1.79 REMARK 500 O PHE A 125 O HOH A 301 1.94 REMARK 500 O HOH A 375 O HOH A 396 1.98 REMARK 500 N GLY A 158 O HOH A 302 1.99 REMARK 500 O HOH A 386 O HOH A 402 2.01 REMARK 500 O HOH A 389 O HOH A 405 2.12 REMARK 500 O GLY A 117 O HOH A 303 2.16 REMARK 500 N CYS A 128 O HOH A 301 2.17 REMARK 500 O GLN A 141 O HOH A 304 2.17 REMARK 500 N ARG A 4 O HOH A 305 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 63 C ASP A 63 O 0.143 REMARK 500 ILE A 142 C ILE A 142 O 0.125 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.088 REMARK 500 GLU A 163 CD GLU A 163 OE2 0.105 REMARK 500 ALA A 186 C ALA A 186 O 0.119 REMARK 500 GLU A 188 CD GLU A 188 OE1 0.099 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.105 REMARK 500 GLY A 198 C GLY A 198 O 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 62 -169.86 -118.01 REMARK 500 ALA A 118 -94.61 -75.50 REMARK 500 SER A 119 35.50 -85.99 REMARK 500 SER A 197 -62.87 -122.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 165 -11.81 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6WNS A 2 205 UNP A0A090F1W4_9RHIZ DBREF2 6WNS A A0A090F1W4 1 204 SEQRES 1 A 204 MET VAL ARG ILE HIS LEU VAL THR TRP GLU ASN ARG LYS SEQRES 2 A 204 LEU TYR ARG LYS VAL LEU GLU ARG TYR PHE ARG ILE ARG SEQRES 3 A 204 TYR ASP ILE TYR VAL LYS GLN ARG ARG TRP ARG ALA VAL SEQRES 4 A 204 ALA ARG PRO ILE ASN ILE GLU ILE ASP ALA PHE ASP ASN SEQRES 5 A 204 GLU HIS ALA LEU TYR VAL LEU ALA LEU ASP ALA ASN GLY SEQRES 6 A 204 LYS ILE VAL GLY GLY SER ARG LEU VAL PRO THR LEU GLU SEQRES 7 A 204 PRO HIS LEU MET SER GLU VAL PHE PRO ILE LEU ALA GLY SEQRES 8 A 204 GLY THR PRO PRO ARG ALA ALA GLU ILE PHE GLU TRP THR SEQRES 9 A 204 ARG PHE PHE VAL MET PRO SER PHE ARG THR LYS GLY ALA SEQRES 10 A 204 SER SER PRO VAL ALA GLY PHE VAL LEU CYS GLY LEU LEU SEQRES 11 A 204 GLU THR ALA GLN SER LEU GLY ILE ARG GLN ILE SER VAL SEQRES 12 A 204 VAL CYS GLU THR PHE TRP PRO LYS ARG LEU ARG ALA LEU SEQRES 13 A 204 GLY TRP THR LEU PHE GLU LEU GLY ASN ALA LEU GLU HIS SEQRES 14 A 204 PRO ASP GLY ASP ILE ILE ALA LEU LEU ILE ASP VAL THR SEQRES 15 A 204 PRO GLU ALA ILE GLU GLN THR ARG ARG ALA TYR GLY ILE SEQRES 16 A 204 SER GLY ALA ILE LEU ALA ASP GLY ILE FORMUL 2 HOH *110(H2 O) HELIX 1 AA1 TYR A 16 VAL A 32 1 17 HELIX 2 AA2 HIS A 81 VAL A 86 1 6 HELIX 3 AA3 PHE A 87 GLY A 92 5 6 HELIX 4 AA4 PRO A 121 LEU A 137 1 17 HELIX 5 AA5 PHE A 149 LEU A 157 1 9 HELIX 6 AA6 THR A 183 TYR A 194 1 12 SHEET 1 AA1 7 ILE A 5 VAL A 8 0 SHEET 2 AA1 7 LEU A 57 ALA A 61 -1 O TYR A 58 N VAL A 8 SHEET 3 AA1 7 GLY A 70 PRO A 76 -1 O LEU A 74 N LEU A 57 SHEET 4 AA1 7 ILE A 101 VAL A 109 -1 O GLU A 103 N VAL A 75 SHEET 5 AA1 7 GLN A 141 GLU A 147 1 O SER A 143 N TRP A 104 SHEET 6 AA1 7 ILE A 175 ASP A 181 -1 O ILE A 180 N ILE A 142 SHEET 7 AA1 7 LEU A 161 GLU A 163 -1 N PHE A 162 O LEU A 179 CRYST1 65.673 65.673 113.539 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008808 0.00000