HEADER    HYDROLASE                               24-APR-20   6WOD              
TITLE     DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 (DIPP1/NUDT3) IN   
TITLE    2 COMPLEX WITH INOSITOL HEXAKISPHOSPHATE AND MG, PRESOAKED WITH 5-IP7, 
TITLE    3 MG AND FLUORIDE, SOAKING 2MIN IN THE ABSENCE OF FLUORIDE.            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: DIPP-1,DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE 1, 
COMPND   5 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 3,NUDIX MOTIF 3;        
COMPND   6 EC: 3.6.1.52,3.6.1.-;                                                
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: NUDT3, DIPP, DIPP1;                                            
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    PHOSPHATASE, NUDIX, CATALYSIS MECHANISM, SUBSTRATE SPECIFICITY,       
KEYWDS   2 INOSITOL, INOSITOL PYROPHOSPHATE, HYDROLASE                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    G.N.ZONG,H.C.WANG,S.B.SHEARS                                          
REVDAT   2   06-MAR-24 6WOD    1       REMARK                                   
REVDAT   1   03-MAR-21 6WOD    0                                                
JRNL        AUTH   G.ZONG,N.JORK,S.HOSTACHY,D.FIEDLER,H.J.JESSEN,S.B.SHEARS,    
JRNL        AUTH 2 H.WANG                                                       
JRNL        TITL   NEW STRUCTURAL INSIGHTS REVEAL AN EXPANDED REACTION CYCLE    
JRNL        TITL 2 FOR INOSITOL PYROPHOSPHATE HYDROLYSIS BY HUMAN DIPP1.        
JRNL        REF    FASEB J.                      V.  35 21275 2021              
JRNL        REFN                   ESSN 1530-6860                               
JRNL        PMID   33475202                                                     
JRNL        DOI    10.1096/FJ.202001489R                                        
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.35 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0253                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 27.77                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 90.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 33243                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.134                           
REMARK   3   R VALUE            (WORKING SET) : 0.133                           
REMARK   3   FREE R VALUE                     : 0.156                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1751                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.35                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.39                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1565                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 58.20                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1730                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 81                           
REMARK   3   BIN FREE R VALUE                    : 0.1890                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1086                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 39                                      
REMARK   3   SOLVENT ATOMS            : 173                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 16.98                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.48000                                             
REMARK   3    B22 (A**2) : 2.48000                                              
REMARK   3    B33 (A**2) : -1.01000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.048         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.045         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.027         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.515         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.975                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.971                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1209 ; 0.009 ; 0.013       
REMARK   3   BOND LENGTHS OTHERS               (A):  1097 ; 0.001 ; 0.018       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  1659 ; 1.681 ; 1.690       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  2556 ; 1.427 ; 1.594       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   151 ; 7.017 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    70 ;27.912 ;21.429       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   214 ;11.105 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    11 ;12.715 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   157 ; 0.109 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1346 ; 0.006 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   263 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  2306 ; 4.918 ; 3.000       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 2                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A     9        A   142                          
REMARK   3    RESIDUE RANGE :   A   501        A   504                          
REMARK   3    ORIGIN FOR THE GROUP (A):    5.983    7.077   13.909              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0101 T22:   0.0033                                     
REMARK   3      T33:   0.0104 T12:  -0.0003                                     
REMARK   3      T13:  -0.0002 T23:  -0.0001                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.0840 L22:   0.1507                                     
REMARK   3      L33:   0.0462 L12:  -0.0410                                     
REMARK   3      L13:  -0.0208 L23:  -0.0240                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0016 S12:   0.0051 S13:   0.0018                       
REMARK   3      S21:  -0.0021 S22:  -0.0020 S23:  -0.0052                       
REMARK   3      S31:  -0.0010 S32:   0.0084 S33:   0.0004                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS U VALUES : WITH TLS ADDED                                 
REMARK   4                                                                      
REMARK   4 6WOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-20.                  
REMARK 100 THE DEPOSITION ID IS D_1000248630.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 10-JUL-19                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER X 16M                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 37995                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.350                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY                : 9.300                              
REMARK 200  R MERGE                    (I) : 0.04400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.37                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 87.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 8.30                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.41500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS            
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.36                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 10% (V/V)            
REMARK 280  ISOPROPANOL, 200 MM LI2SO4, 75 MM NAAC, PH 5.5 AND 25 MM HEPES,     
REMARK 280  PH 7.0 AND SOAKING IN SOLUTION OF 200 MM LICL, 20% (W/V) PEG        
REMARK 280  8000, 20% (V/V) ISOPROPANOL, 100 MM HEPES, PH 7.0, 80 MM NAF, 20    
REMARK 280  MM MGCL2 IN PRESENT OF 2MM 5-IP7 FOR 2 DAYS, AND TRANSFERRED        
REMARK 280  INTO 200 MM LICL, 20% (W/V) PEG 8000, 20% (V/V) ISOPROPANOL, 100    
REMARK 280  MM HEPES, PH 7.0, 20 MM MGCL2 FOR 2MIN., VAPOR DIFFUSION,           
REMARK 280  HANGING DROP, TEMPERATURE 293K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       23.11200            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       31.35950            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       29.80250            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       31.35950            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       23.11200            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       29.80250            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     HIS A   -20                                                      
REMARK 465     HIS A   -19                                                      
REMARK 465     HIS A   -18                                                      
REMARK 465     HIS A   -17                                                      
REMARK 465     HIS A   -16                                                      
REMARK 465     HIS A   -15                                                      
REMARK 465     SER A   -14                                                      
REMARK 465     SER A   -13                                                      
REMARK 465     GLY A   -12                                                      
REMARK 465     VAL A   -11                                                      
REMARK 465     ASP A   -10                                                      
REMARK 465     LEU A    -9                                                      
REMARK 465     GLY A    -8                                                      
REMARK 465     THR A    -7                                                      
REMARK 465     GLU A    -6                                                      
REMARK 465     ASN A    -5                                                      
REMARK 465     LEU A    -4                                                      
REMARK 465     TYR A    -3                                                      
REMARK 465     PHE A    -2                                                      
REMARK 465     GLN A    -1                                                      
REMARK 465     SER A     0                                                      
REMARK 465     MET A     1                                                      
REMARK 465     MET A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     LEU A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     SER A     6                                                      
REMARK 465     ASN A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     LEU A   143                                                      
REMARK 465     ARG A   144                                                      
REMARK 465     GLN A   145                                                      
REMARK 465     GLY A   146                                                      
REMARK 465     TYR A   147                                                      
REMARK 465     SER A   148                                                      
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 501  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLY A  50   O                                                      
REMARK 620 2 GLU A  70   OE1  85.0                                              
REMARK 620 3 IHP A 504   O24 171.7  88.9                                        
REMARK 620 4 IHP A 504   O25  92.8 173.8  93.8                                  
REMARK 620 5 HOH A 629   O    82.5  88.1  91.7  97.4                            
REMARK 620 6 HOH A 643   O    95.6  80.8  89.0  93.6 168.9                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 504                 
DBREF  6WOD A    1   148  UNP    O95989   NUDT3_HUMAN      1    148             
SEQADV 6WOD HIS A  -20  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD HIS A  -19  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD HIS A  -18  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD HIS A  -17  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD HIS A  -16  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD HIS A  -15  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD SER A  -14  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD SER A  -13  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD GLY A  -12  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD VAL A  -11  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD ASP A  -10  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD LEU A   -9  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD GLY A   -8  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD THR A   -7  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD GLU A   -6  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD ASN A   -5  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD LEU A   -4  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD TYR A   -3  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD PHE A   -2  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD GLN A   -1  UNP  O95989              EXPRESSION TAG                 
SEQADV 6WOD SER A    0  UNP  O95989              EXPRESSION TAG                 
SEQRES   1 A  169  HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU GLY          
SEQRES   2 A  169  THR GLU ASN LEU TYR PHE GLN SER MET MET LYS LEU LYS          
SEQRES   3 A  169  SER ASN GLN THR ARG THR TYR ASP GLY ASP GLY TYR LYS          
SEQRES   4 A  169  LYS ARG ALA ALA CYS LEU CYS PHE ARG SER GLU SER GLU          
SEQRES   5 A  169  GLU GLU VAL LEU LEU VAL SER SER SER ARG HIS PRO ASP          
SEQRES   6 A  169  ARG TRP ILE VAL PRO GLY GLY GLY MET GLU PRO GLU GLU          
SEQRES   7 A  169  GLU PRO SER VAL ALA ALA VAL ARG GLU VAL CYS GLU GLU          
SEQRES   8 A  169  ALA GLY VAL LYS GLY THR LEU GLY ARG LEU VAL GLY ILE          
SEQRES   9 A  169  PHE GLU ASN GLN GLU ARG LYS HIS ARG THR TYR VAL TYR          
SEQRES  10 A  169  VAL LEU ILE VAL THR GLU VAL LEU GLU ASP TRP GLU ASP          
SEQRES  11 A  169  SER VAL ASN ILE GLY ARG LYS ARG GLU TRP PHE LYS ILE          
SEQRES  12 A  169  GLU ASP ALA ILE LYS VAL LEU GLN TYR HIS LYS PRO VAL          
SEQRES  13 A  169  GLN ALA SER TYR PHE GLU THR LEU ARG GLN GLY TYR SER          
HET     MG  A 501       1                                                       
HET     CL  A 502       1                                                       
HET     CL  A 503       1                                                       
HET    IHP  A 504      36                                                       
HETNAM      MG MAGNESIUM ION                                                    
HETNAM      CL CHLORIDE ION                                                     
HETNAM     IHP INOSITOL HEXAKISPHOSPHATE                                        
HETSYN     IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6-             
HETSYN   2 IHP  HEXAKISPHOSPHATE                                                
FORMUL   2   MG    MG 2+                                                        
FORMUL   3   CL    2(CL 1-)                                                     
FORMUL   5  IHP    C6 H18 O24 P6                                                
FORMUL   6  HOH   *173(H2 O)                                                    
HELIX    1 AA1 GLU A   58  GLY A   72  1                                  15    
HELIX    2 AA2 TRP A  107  GLY A  114  1                                   8    
HELIX    3 AA3 ILE A  122  GLN A  130  1                                   9    
HELIX    4 AA4 LYS A  133  TYR A  139  1                                   7    
SHEET    1 AA1 4 GLY A  50  GLY A  52  0                                        
SHEET    2 AA1 4 LYS A  18  PHE A  26 -1  N  ALA A  21   O  GLY A  51           
SHEET    3 AA1 4 HIS A  91  VAL A 103  1  O  TYR A  96   N  LEU A  24           
SHEET    4 AA1 4 VAL A  73  ASN A  86 -1  N  GLY A  78   O  VAL A  97           
SHEET    1 AA2 3 TRP A  46  ILE A  47  0                                        
SHEET    2 AA2 3 GLU A  33  SER A  38 -1  N  VAL A  37   O  ILE A  47           
SHEET    3 AA2 3 ARG A 117  LYS A 121 -1  O  PHE A 120   N  VAL A  34           
LINK         O   GLY A  50                MG    MG A 501     1555   1555  2.15  
LINK         OE1 GLU A  70                MG    MG A 501     1555   1555  2.09  
LINK        MG    MG A 501                 O24 IHP A 504     1555   1555  2.05  
LINK        MG    MG A 501                 O25 IHP A 504     1555   1555  2.00  
LINK        MG    MG A 501                 O   HOH A 629     1555   1555  2.07  
LINK        MG    MG A 501                 O   HOH A 643     1555   1555  2.08  
SITE     1 AC1  6 GLY A  50  GLY A  51  GLU A  70  IHP A 504                    
SITE     2 AC1  6 HOH A 629  HOH A 643                                          
SITE     1 AC2  2 ASN A  86  HOH A 684                                          
SITE     1 AC3  6 SER A  28  SER A  30  GLU A  31  GLU A  32                    
SITE     2 AC3  6 GLU A  33  HOH A 664                                          
SITE     1 AC4 27 ARG A  10  LYS A  18  ARG A  20  SER A  39                    
SITE     2 AC4 27 SER A  40  ARG A  41  ILE A  47  GLY A  50                    
SITE     3 AC4 27 GLY A  51  GLY A  52  GLU A  70  ARG A  89                    
SITE     4 AC4 27 HIS A  91  ARG A 115  LYS A 133   MG A 501                    
SITE     5 AC4 27 HOH A 601  HOH A 602  HOH A 603  HOH A 615                    
SITE     6 AC4 27 HOH A 629  HOH A 636  HOH A 643  HOH A 653                    
SITE     7 AC4 27 HOH A 672  HOH A 679  HOH A 692                               
CRYST1   46.224   59.605   62.719  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021634  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.016777  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015944        0.00000