HEADER OXIDOREDUCTASE 30-APR-20 6WSA TITLE CRYSTAL STRUCTURE OF A BETAINE ALDEHYDE DEHYDROGENASE FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI WITHOUT COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD/NADP-DEPENDENT BETAINE ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BADH; COMPND 5 EC: 1.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1710B); SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: BETB, BURPS1710B_A0376; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASE, NIAID, KEYWDS 2 MELIOIDOSIS, GLYCINE METABOLISM, SERINE METABOLISM, THREONINE KEYWDS 3 METABOLISM, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 4 FOR INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 18-OCT-23 6WSA 1 REMARK REVDAT 2 16-FEB-22 6WSA 1 JRNL REVDAT 1 20-MAY-20 6WSA 0 JRNL AUTH D.K.BEARD,S.SUBRAMANIAN,J.ABENDROTH,D.M.DRANOW,T.E.EDWARDS, JRNL AUTH 2 P.J.MYLER,O.A.ASOJO JRNL TITL CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 78 45 2022 JRNL REFN ESSN 2053-230X JRNL PMID 35102892 JRNL DOI 10.1107/S2053230X21013455 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1.3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 49171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5100 - 5.6500 0.99 2545 159 0.1440 0.1724 REMARK 3 2 5.6500 - 4.4900 1.00 2374 155 0.1136 0.1249 REMARK 3 3 4.4900 - 3.9200 1.00 2334 156 0.1068 0.1233 REMARK 3 4 3.9200 - 3.5600 1.00 2314 147 0.1225 0.1584 REMARK 3 5 3.5600 - 3.3100 1.00 2305 155 0.1378 0.1595 REMARK 3 6 3.3100 - 3.1100 0.99 2271 147 0.1501 0.2108 REMARK 3 7 3.1100 - 2.9600 0.99 2267 142 0.1484 0.1806 REMARK 3 8 2.9600 - 2.8300 0.99 2240 150 0.1573 0.2095 REMARK 3 9 2.8300 - 2.7200 0.98 2244 142 0.1528 0.1874 REMARK 3 10 2.7200 - 2.6300 0.98 2228 127 0.1513 0.1951 REMARK 3 11 2.6300 - 2.5400 0.98 2236 141 0.1465 0.1727 REMARK 3 12 2.5400 - 2.4700 0.97 2196 128 0.1452 0.1829 REMARK 3 13 2.4700 - 2.4100 0.97 2199 135 0.1433 0.1900 REMARK 3 14 2.4100 - 2.3500 0.96 2124 150 0.1430 0.1959 REMARK 3 15 2.3500 - 2.2900 0.94 2118 131 0.1461 0.2129 REMARK 3 16 2.2900 - 2.2400 0.92 2046 156 0.1699 0.2276 REMARK 3 17 2.2400 - 2.2000 0.92 2078 124 0.1663 0.1763 REMARK 3 18 2.2000 - 2.1600 0.92 2080 124 0.1642 0.2320 REMARK 3 19 2.1600 - 2.1200 0.91 2036 129 0.1754 0.2084 REMARK 3 20 2.1200 - 2.0800 0.90 2047 125 0.1923 0.2391 REMARK 3 21 2.0800 - 2.0500 0.87 1957 109 0.2203 0.2521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8750 60.2914 -8.2448 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.4465 REMARK 3 T33: 0.2760 T12: 0.0515 REMARK 3 T13: 0.0642 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.3341 L22: 2.0275 REMARK 3 L33: 1.2980 L12: 0.9873 REMARK 3 L13: -0.6657 L23: -0.5605 REMARK 3 S TENSOR REMARK 3 S11: 0.1176 S12: -0.2183 S13: 0.1256 REMARK 3 S21: 0.1668 S22: -0.0298 S23: 0.2853 REMARK 3 S31: -0.1962 S32: -0.3457 S33: -0.1083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8169 60.6450 -16.7648 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.2677 REMARK 3 T33: 0.1613 T12: -0.0200 REMARK 3 T13: 0.0103 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 4.0527 L22: 0.9533 REMARK 3 L33: 1.4433 L12: -0.1037 REMARK 3 L13: -0.2080 L23: 0.1321 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.1233 S13: 0.2677 REMARK 3 S21: 0.0668 S22: -0.0274 S23: -0.2590 REMARK 3 S31: -0.2522 S32: 0.0221 S33: -0.0297 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4336 53.1873 -24.1107 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.2351 REMARK 3 T33: 0.1915 T12: 0.0064 REMARK 3 T13: 0.0035 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7131 L22: 0.3797 REMARK 3 L33: 0.7345 L12: -0.0060 REMARK 3 L13: -0.2291 L23: -0.0123 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0473 S13: 0.0286 REMARK 3 S21: 0.0087 S22: 0.0124 S23: 0.1032 REMARK 3 S31: -0.0611 S32: -0.2032 S33: -0.0551 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6677 26.9469 -27.5435 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.4023 REMARK 3 T33: 0.3218 T12: -0.1590 REMARK 3 T13: 0.0016 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.3050 L22: 2.5143 REMARK 3 L33: 1.6266 L12: 0.1985 REMARK 3 L13: -0.0992 L23: 1.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.1205 S13: -0.2574 REMARK 3 S21: 0.1454 S22: -0.1089 S23: 0.2808 REMARK 3 S31: 0.3620 S32: -0.4985 S33: 0.0992 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9930 36.8452 -16.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.6498 REMARK 3 T33: 0.3975 T12: -0.0927 REMARK 3 T13: 0.0422 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3737 L22: 0.8124 REMARK 3 L33: 1.2967 L12: 0.1382 REMARK 3 L13: 0.4487 L23: 0.2386 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.1016 S13: 0.0184 REMARK 3 S21: 0.1309 S22: -0.1111 S23: 0.2832 REMARK 3 S31: 0.1089 S32: -0.7515 S33: 0.0507 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8909 32.7836 -37.8028 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.4525 REMARK 3 T33: 0.3001 T12: -0.0928 REMARK 3 T13: -0.0441 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.1246 L22: 0.4322 REMARK 3 L33: 1.2601 L12: 0.2373 REMARK 3 L13: -0.3753 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.1900 S13: -0.0931 REMARK 3 S21: -0.0827 S22: -0.0899 S23: 0.2335 REMARK 3 S31: 0.1297 S32: -0.6041 S33: 0.0661 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 441 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9336 53.7013 -37.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.2148 REMARK 3 T33: 0.2364 T12: 0.0217 REMARK 3 T13: 0.0069 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.6888 L22: 1.0816 REMARK 3 L33: 0.8196 L12: 0.4300 REMARK 3 L13: -0.1216 L23: -0.3555 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0064 S13: 0.0622 REMARK 3 S21: -0.0565 S22: 0.0019 S23: 0.0900 REMARK 3 S31: -0.0965 S32: -0.1414 S33: -0.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WSA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.085 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.28 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00020.B.AE1.PS38619 AT 34.72 REMARK 280 MG/ML AGAINST JCSG+ SCREEN CONDITION F7: 0.8 M SUCCINATE PH 7.0 REMARK 280 SUPPLEMENTED WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, UNIQUE REMARK 280 PUCK ID GFM8-1, CRYSTAL TRACKING ID 314025F7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.68667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.84333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 155.68667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.84333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 155.68667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 77.84333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 155.68667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.84333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.93000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.40950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -77.84333 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 53.93000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 93.40950 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -77.84333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 921 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 683 O HOH A 998 2.13 REMARK 500 O HOH A 894 O HOH A 1057 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 8 -149.15 -145.66 REMARK 500 VAL A 104 -57.13 -121.38 REMARK 500 ARG A 131 165.69 175.64 REMARK 500 SER A 244 24.60 -154.51 REMARK 500 LEU A 252 -169.35 -116.42 REMARK 500 GLN A 283 62.71 -104.47 REMARK 500 ASP A 360 -135.74 56.07 REMARK 500 ASP A 360 -135.92 56.37 REMARK 500 GLN A 366 67.17 -112.13 REMARK 500 LYS A 456 -132.57 59.43 REMARK 500 ASN A 464 173.63 61.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1101 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 515 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 PHE A 27 O 92.8 REMARK 620 3 ASP A 93 O 135.6 96.8 REMARK 620 4 ASP A 93 OD1 60.4 110.9 75.7 REMARK 620 5 VAL A 180 O 82.3 158.5 101.3 84.9 REMARK 620 6 HOH A 726 O 159.8 85.3 64.5 138.7 92.1 REMARK 620 7 HOH A 874 O 80.5 80.6 143.8 139.1 77.9 79.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 515 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPSA.00020.B RELATED DB: TARGETTRACK DBREF 6WSA A 1 489 UNP Q3JLL8 BETB_BURP1 1 489 SEQADV 6WSA GLY A 490 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 491 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 492 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 493 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 494 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 495 UNP Q3JLL8 EXPRESSION TAG SEQADV 6WSA HIS A 496 UNP Q3JLL8 EXPRESSION TAG SEQRES 1 A 496 MET SER VAL TYR GLY LEU GLN ARG LEU TYR ILE ALA GLY SEQRES 2 A 496 ALA HIS ALA ASP ALA THR SER GLY LYS THR PHE ASP THR SEQRES 3 A 496 PHE ASP PRO ALA THR GLY GLU LEU LEU ALA ARG VAL GLN SEQRES 4 A 496 GLN ALA SER ALA ASP ASP VAL ASP ARG ALA VAL ALA SER SEQRES 5 A 496 ALA ARG GLU GLY GLN ARG GLU TRP ALA ALA MET THR ALA SEQRES 6 A 496 MET GLN ARG SER ARG ILE LEU ARG ARG ALA VAL GLU LEU SEQRES 7 A 496 LEU ARG GLU ARG ASN ASP ALA LEU ALA GLU LEU GLU MET SEQRES 8 A 496 ARG ASP THR GLY LYS PRO ILE ALA GLU THR ARG ALA VAL SEQRES 9 A 496 ASP ILE VAL THR GLY ALA ASP VAL ILE GLU TYR TYR ALA SEQRES 10 A 496 GLY LEU ALA THR ALA ILE GLU GLY LEU GLN VAL PRO LEU SEQRES 11 A 496 ARG PRO GLU SER PHE VAL TYR THR ARG ARG GLU PRO LEU SEQRES 12 A 496 GLY VAL CYS ALA GLY ILE GLY ALA TRP ASN TYR PRO ILE SEQRES 13 A 496 GLN ILE ALA CYS TRP LYS SER ALA PRO ALA LEU ALA ALA SEQRES 14 A 496 GLY ASN ALA MET ILE PHE LYS PRO SER GLU VAL THR PRO SEQRES 15 A 496 LEU SER ALA LEU LYS LEU ALA GLU ILE TYR THR GLU ALA SEQRES 16 A 496 GLY VAL PRO ALA GLY VAL PHE ASN VAL VAL GLN GLY ASP SEQRES 17 A 496 GLY SER VAL GLY ALA LEU LEU SER ALA HIS PRO GLY ILE SEQRES 18 A 496 ALA LYS VAL SER PHE THR GLY GLY VAL GLU THR GLY LYS SEQRES 19 A 496 LYS VAL MET SER LEU ALA GLY ALA SER SER LEU LYS GLU SEQRES 20 A 496 VAL THR MET GLU LEU GLY GLY LYS SER PRO LEU ILE VAL SEQRES 21 A 496 PHE ASP ASP ALA ASP LEU ASP ARG ALA ALA ASP ILE ALA SEQRES 22 A 496 VAL THR ALA ASN PHE PHE SER ALA GLY GLN VAL CYS THR SEQRES 23 A 496 ASN GLY THR ARG VAL PHE VAL GLN GLN ALA VAL LYS ASP SEQRES 24 A 496 ALA PHE VAL GLU ARG VAL LEU ALA ARG VAL ALA ARG ILE SEQRES 25 A 496 ARG VAL GLY LYS PRO SER ASP SER ASP THR ASN PHE GLY SEQRES 26 A 496 PRO LEU ALA SER ALA ALA GLN LEU ASP LYS VAL LEU GLY SEQRES 27 A 496 TYR ILE ASP SER GLY LYS ALA GLU GLY ALA LYS LEU LEU SEQRES 28 A 496 ALA GLY GLY ALA ARG LEU VAL ASN ASP HIS PHE ALA SER SEQRES 29 A 496 GLY GLN TYR VAL ALA PRO THR VAL PHE GLY ASP CYS ARG SEQRES 30 A 496 ASP ASP MET ARG ILE VAL ARG GLU GLU ILE PHE GLY PRO SEQRES 31 A 496 VAL MET SER ILE LEU SER PHE GLU THR GLU ASP GLU ALA SEQRES 32 A 496 ILE ALA ARG ALA ASN ALA THR ASP TYR GLY LEU ALA ALA SEQRES 33 A 496 GLY VAL VAL THR GLU ASN LEU SER ARG ALA HIS ARG ALA SEQRES 34 A 496 ILE HIS ARG LEU GLU ALA GLY ILE CYS TRP ILE ASN THR SEQRES 35 A 496 TRP GLY GLU SER PRO ALA GLU MET PRO VAL GLY GLY TYR SEQRES 36 A 496 LYS GLN SER GLY VAL GLY ARG GLU ASN GLY ILE THR THR SEQRES 37 A 496 LEU GLU HIS TYR THR ARG ILE LYS SER VAL GLN VAL GLU SEQRES 38 A 496 LEU GLY ARG TYR GLN PRO VAL PHE GLY HIS HIS HIS HIS SEQRES 39 A 496 HIS HIS HET SIN A 501 8 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET NA A 515 1 HETNAM SIN SUCCINIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SIN C4 H6 O4 FORMUL 3 EDO 13(C2 H6 O2) FORMUL 16 NA NA 1+ FORMUL 17 HOH *501(H2 O) HELIX 1 AA1 SER A 42 MET A 63 1 22 HELIX 2 AA2 THR A 64 ARG A 82 1 19 HELIX 3 AA3 ARG A 82 GLY A 95 1 14 HELIX 4 AA4 PRO A 97 VAL A 104 1 8 HELIX 5 AA5 VAL A 104 ALA A 120 1 17 HELIX 6 AA6 THR A 121 ILE A 123 5 3 HELIX 7 AA7 TYR A 154 ALA A 169 1 16 HELIX 8 AA8 PRO A 182 GLY A 196 1 15 HELIX 9 AA9 ASP A 208 HIS A 218 1 11 HELIX 10 AB1 GLY A 229 LEU A 245 1 17 HELIX 11 AB2 ASP A 265 PHE A 279 1 15 HELIX 12 AB3 SER A 280 GLN A 283 5 4 HELIX 13 AB4 GLN A 295 ALA A 310 1 16 HELIX 14 AB5 SER A 329 GLU A 346 1 18 HELIX 15 AB6 ASN A 359 GLY A 365 5 7 HELIX 16 AB7 MET A 380 GLU A 385 1 6 HELIX 17 AB8 THR A 399 ALA A 409 1 11 HELIX 18 AB9 ASN A 422 LEU A 433 1 12 HELIX 19 AC1 TYR A 455 GLN A 457 5 3 HELIX 20 AC2 ASN A 464 HIS A 471 1 8 SHEET 1 AA1 3 LEU A 6 GLN A 7 0 SHEET 2 AA1 3 LEU A 34 GLN A 39 1 O ARG A 37 N GLN A 7 SHEET 3 AA1 3 THR A 23 PHE A 27 -1 N PHE A 24 O VAL A 38 SHEET 1 AA2 2 LEU A 9 ILE A 11 0 SHEET 2 AA2 2 ALA A 14 ALA A 16 -1 O ALA A 16 N LEU A 9 SHEET 1 AA3 3 GLN A 127 ARG A 131 0 SHEET 2 AA3 3 SER A 134 PRO A 142 -1 O VAL A 136 N VAL A 128 SHEET 3 AA3 3 THR A 473 GLU A 481 -1 O VAL A 480 N PHE A 135 SHEET 1 AA4 6 PHE A 202 VAL A 204 0 SHEET 2 AA4 6 ALA A 172 LYS A 176 1 N PHE A 175 O ASN A 203 SHEET 3 AA4 6 VAL A 145 ILE A 149 1 N CYS A 146 O ALA A 172 SHEET 4 AA4 6 LYS A 223 THR A 227 1 O LYS A 223 N ALA A 147 SHEET 5 AA4 6 GLU A 247 GLU A 251 1 O GLU A 251 N PHE A 226 SHEET 6 AA4 6 GLY A 459 VAL A 460 -1 O VAL A 460 N MET A 250 SHEET 1 AA5 7 LYS A 349 ALA A 352 0 SHEET 2 AA5 7 THR A 371 GLY A 374 -1 O GLY A 374 N LYS A 349 SHEET 3 AA5 7 VAL A 391 PHE A 397 1 O MET A 392 N PHE A 373 SHEET 4 AA5 7 ARG A 290 GLN A 294 1 N VAL A 291 O SER A 393 SHEET 5 AA5 7 PRO A 257 VAL A 260 1 N VAL A 260 O PHE A 292 SHEET 6 AA5 7 ALA A 415 VAL A 419 1 O GLY A 417 N ILE A 259 SHEET 7 AA5 7 ILE A 437 ILE A 440 1 O ILE A 437 N ALA A 416 LINK OG1 THR A 26 NA NA A 515 1555 1555 2.54 LINK O PHE A 27 NA NA A 515 1555 1555 2.60 LINK O ASP A 93 NA NA A 515 1555 1555 2.57 LINK OD1 ASP A 93 NA NA A 515 1555 1555 2.73 LINK O VAL A 180 NA NA A 515 1555 1555 2.55 LINK NA NA A 515 O HOH A 726 1555 1555 2.61 LINK NA NA A 515 O HOH A 874 1555 1555 2.67 SITE 1 AC1 10 SER A 2 GLY A 5 LEU A 6 ARG A 8 SITE 2 AC1 10 HIS A 15 HOH A 638 HOH A 652 HOH A 681 SITE 3 AC1 10 HOH A 721 HOH A 733 SITE 1 AC2 3 ARG A 140 GLU A 470 THR A 473 SITE 1 AC3 5 GLN A 157 TRP A 161 VAL A 284 HOH A 610 SITE 2 AC3 5 HOH A 797 SITE 1 AC4 4 ARG A 82 GLU A 194 EDO A 508 HOH A 763 SITE 1 AC5 7 GLY A 209 GLY A 212 ALA A 213 THR A 232 SITE 2 AC5 7 VAL A 236 HOH A 671 HOH A 731 SITE 1 AC6 4 PHE A 279 GLY A 444 VAL A 488 HOH A 855 SITE 1 AC7 3 ARG A 58 GLU A 59 HOH A 942 SITE 1 AC8 6 SER A 2 LEU A 34 EDO A 504 HOH A 837 SITE 2 AC8 6 HOH A 890 HOH A 948 SITE 1 AC9 5 LEU A 79 ARG A 80 ASN A 83 ILE A 106 SITE 2 AC9 5 VAL A 107 SITE 1 AD1 5 ASP A 47 ALA A 51 HIS A 218 HOH A 619 SITE 2 AD1 5 HOH A 870 SITE 1 AD2 4 ASP A 262 GLN A 294 GLN A 295 ALA A 296 SITE 1 AD3 3 ASP A 267 ARG A 304 ARG A 308 SITE 1 AD4 4 LEU A 337 ASP A 341 GLY A 354 HOH A 608 SITE 1 AD5 3 ALA A 222 ARG A 474 HOH A 655 SITE 1 AD6 6 THR A 26 PHE A 27 ASP A 93 VAL A 180 SITE 2 AD6 6 HOH A 726 HOH A 874 CRYST1 107.860 107.860 233.530 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009271 0.005353 0.000000 0.00000 SCALE2 0.000000 0.010706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004282 0.00000