HEADER VIRAL PROTEIN 02-MAY-20 6WTC TITLE CRYSTAL STRUCTURE OF THE SECOND FORM OF THE CO-FACTOR COMPLEX OF NSP7 TITLE 2 AND THE C-TERMINAL DOMAIN OF NSP8 FROM SARS COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 3860-3942; COMPND 5 SYNONYM: NSP7,SARS-COV-2 NSP7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 8; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 4019-4140); COMPND 11 SYNONYM: NSP8,SARS-COV-2 NSP8; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 14 2; SOURCE 15 ORGANISM_COMMON: 2019-NCOV; SOURCE 16 ORGANISM_TAXID: 2697049; SOURCE 17 GENE: REP, 1A-1B; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PMCSG120 KEYWDS SARS COV-2, CO-FACTOR FOR RNA POLYMERASE NSP12, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WILAMOWSKI,Y.KIM,R.JEDRZEJCZAK,N.MALTSEVA,M.ENDRES,A.GODZIK, AUTHOR 2 K.MICHALSKA,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 18-OCT-23 6WTC 1 REMARK REVDAT 2 27-JAN-21 6WTC 1 COMPND REVDAT 1 13-MAY-20 6WTC 0 JRNL AUTH M.WILAMOWSKI,Y.KIM,R.JEDRZEJCZAK,N.MALTSEVA,M.ENDRES, JRNL AUTH 2 A.GODZIK,K.MICHALSKA,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE SECOND FORM OF THE CO-FACTOR JRNL TITL 2 COMPLEX OF NSP7 AND THE C-TERMINAL DOMAIN OF NSP8 FROM SARS JRNL TITL 3 COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 29931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5700 - 3.9900 0.98 2920 144 0.1488 0.1719 REMARK 3 2 3.9800 - 3.1600 0.98 2918 140 0.1776 0.2013 REMARK 3 3 3.1600 - 2.7600 0.99 2884 177 0.2048 0.2298 REMARK 3 4 2.7600 - 2.5100 0.99 2906 151 0.2055 0.2394 REMARK 3 5 2.5100 - 2.3300 0.97 2888 129 0.2144 0.2358 REMARK 3 6 2.3300 - 2.1900 0.98 2886 141 0.2122 0.2638 REMARK 3 7 2.1900 - 2.0800 0.99 2882 167 0.2211 0.2438 REMARK 3 8 2.0800 - 1.9900 0.96 2814 149 0.2528 0.2650 REMARK 3 9 1.9900 - 1.9200 0.95 2779 150 0.2745 0.3105 REMARK 3 10 1.9200 - 1.8500 0.88 2593 113 0.3132 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.257 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2974 REMARK 3 ANGLE : 0.487 4038 REMARK 3 CHIRALITY : 0.041 513 REMARK 3 PLANARITY : 0.003 502 REMARK 3 DIHEDRAL : 16.497 1094 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 99 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5229 11.8668 6.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.4069 REMARK 3 T33: 0.4048 T12: 0.0684 REMARK 3 T13: 0.0227 T23: -0.0765 REMARK 3 L TENSOR REMARK 3 L11: 6.3169 L22: 6.5145 REMARK 3 L33: 2.5513 L12: 2.6905 REMARK 3 L13: 3.8271 L23: 1.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.4946 S13: 0.2242 REMARK 3 S21: 0.0495 S22: 0.1912 S23: -0.8234 REMARK 3 S31: 0.6726 S32: 1.5131 S33: -0.1372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 113 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1781 21.6503 15.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.2860 T22: 0.2217 REMARK 3 T33: 0.3014 T12: 0.0287 REMARK 3 T13: 0.0073 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 5.7385 L22: 6.6448 REMARK 3 L33: 9.1129 L12: 1.5515 REMARK 3 L13: 4.0709 L23: 3.4848 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: -0.0433 S13: 0.3583 REMARK 3 S21: -0.0745 S22: -0.0314 S23: 0.0996 REMARK 3 S31: -0.0887 S32: 0.2630 S33: 0.0651 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 161 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4748 21.9735 28.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.6163 T22: 0.4140 REMARK 3 T33: 0.4843 T12: 0.0692 REMARK 3 T13: -0.1807 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.8032 L22: 3.8655 REMARK 3 L33: 5.9135 L12: 0.7049 REMARK 3 L13: 1.9570 L23: 2.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.4192 S12: -0.6761 S13: -0.1016 REMARK 3 S21: 0.4841 S22: -0.0742 S23: -0.6550 REMARK 3 S31: 1.0539 S32: 0.5805 S33: -0.3365 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 184 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6000 24.8357 15.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.3037 REMARK 3 T33: 0.4147 T12: 0.0239 REMARK 3 T13: -0.0494 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 4.4959 L22: 8.9291 REMARK 3 L33: 4.9796 L12: -0.3337 REMARK 3 L13: 4.3367 L23: 2.8830 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.3437 S13: 0.2661 REMARK 3 S21: -0.0054 S22: 0.0257 S23: 0.1502 REMARK 3 S31: 0.0085 S32: -0.4253 S33: 0.2284 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9593 -3.9861 38.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.3732 T22: 0.2735 REMARK 3 T33: 0.2897 T12: -0.0311 REMARK 3 T13: 0.0412 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 5.5391 L22: 5.1973 REMARK 3 L33: 8.6366 L12: -0.3691 REMARK 3 L13: 6.0157 L23: 0.5921 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: 0.5911 S13: 0.4220 REMARK 3 S21: 0.0649 S22: 0.0593 S23: -0.4558 REMARK 3 S31: -0.0302 S32: 0.5504 S33: 0.1118 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9147 -8.0083 41.3647 REMARK 3 T TENSOR REMARK 3 T11: 0.8533 T22: 1.0242 REMARK 3 T33: 0.6858 T12: 0.1940 REMARK 3 T13: 0.1301 T23: 0.0836 REMARK 3 L TENSOR REMARK 3 L11: 3.8359 L22: 3.1587 REMARK 3 L33: 4.0259 L12: -1.5335 REMARK 3 L13: 2.7777 L23: 0.4929 REMARK 3 S TENSOR REMARK 3 S11: -0.3936 S12: -1.0054 S13: -0.1768 REMARK 3 S21: 1.6423 S22: 1.9279 S23: 3.7134 REMARK 3 S31: -0.6088 S32: -2.9505 S33: -1.1320 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7434 -13.5395 41.8515 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.2663 REMARK 3 T33: 0.2687 T12: 0.0334 REMARK 3 T13: -0.0035 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.5303 L22: 6.3945 REMARK 3 L33: 9.4168 L12: 3.9090 REMARK 3 L13: 0.3995 L23: 0.4122 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.3481 S13: -0.2039 REMARK 3 S21: -0.3486 S22: 0.0228 S23: -0.1617 REMARK 3 S31: 0.5385 S32: 0.2533 S33: -0.1197 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6796 -12.6484 32.9023 REMARK 3 T TENSOR REMARK 3 T11: 0.5586 T22: 0.3239 REMARK 3 T33: 0.3333 T12: 0.0466 REMARK 3 T13: 0.0473 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.7652 L22: 4.3605 REMARK 3 L33: 9.4640 L12: 0.2323 REMARK 3 L13: 4.7531 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.5492 S12: 0.2368 S13: -0.3964 REMARK 3 S21: -0.3641 S22: -0.1502 S23: -0.1866 REMARK 3 S31: 0.8638 S32: 0.4358 S33: -0.3556 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9661 -5.5763 27.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.6530 T22: 0.7176 REMARK 3 T33: 0.9532 T12: -0.0189 REMARK 3 T13: -0.1031 T23: 0.1308 REMARK 3 L TENSOR REMARK 3 L11: 8.8421 L22: 4.3473 REMARK 3 L33: 5.7215 L12: 3.4122 REMARK 3 L13: -5.9809 L23: -0.9887 REMARK 3 S TENSOR REMARK 3 S11: 1.5301 S12: 1.2264 S13: 0.9819 REMARK 3 S21: -0.8564 S22: 1.0089 S23: 3.7295 REMARK 3 S31: 1.2486 S32: -0.1575 S33: -2.4749 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6865 1.8822 22.4406 REMARK 3 T TENSOR REMARK 3 T11: 0.7828 T22: 0.5149 REMARK 3 T33: 0.5459 T12: -0.0228 REMARK 3 T13: 0.0802 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 3.8139 L22: 4.5403 REMARK 3 L33: 4.6241 L12: 3.7785 REMARK 3 L13: 4.1486 L23: 4.2349 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 1.3848 S13: -0.2504 REMARK 3 S21: -2.9327 S22: 0.3581 S23: 0.0154 REMARK 3 S31: -1.4488 S32: -0.5674 S33: -0.2830 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8829 3.5960 32.2435 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.3611 REMARK 3 T33: 0.2804 T12: -0.0320 REMARK 3 T13: 0.0282 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.5847 L22: 8.9373 REMARK 3 L33: 9.0114 L12: -6.6984 REMARK 3 L13: -6.1088 L23: 8.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.1442 S12: 0.2938 S13: 0.1775 REMARK 3 S21: -0.2588 S22: -0.1868 S23: -0.1534 REMARK 3 S31: -0.1477 S32: -0.2606 S33: -0.0148 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0098 -16.0513 24.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.3419 T22: 0.2712 REMARK 3 T33: 0.2356 T12: -0.0050 REMARK 3 T13: 0.0164 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.9662 L22: 7.3032 REMARK 3 L33: 4.9437 L12: 3.1799 REMARK 3 L13: 3.2503 L23: 1.1567 REMARK 3 S TENSOR REMARK 3 S11: 0.4304 S12: -0.2221 S13: -0.3373 REMARK 3 S21: 0.2532 S22: -0.0522 S23: 0.0929 REMARK 3 S31: 0.3768 S32: -0.0978 S33: -0.3200 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5204 -22.7555 14.9521 REMARK 3 T TENSOR REMARK 3 T11: 0.4241 T22: 0.3284 REMARK 3 T33: 0.3776 T12: -0.0460 REMARK 3 T13: -0.0243 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 8.4676 L22: 2.6959 REMARK 3 L33: 4.5076 L12: 0.0806 REMARK 3 L13: 3.0785 L23: 0.7864 REMARK 3 S TENSOR REMARK 3 S11: 0.2308 S12: 0.5791 S13: -0.5461 REMARK 3 S21: -0.2989 S22: 0.1854 S23: -0.1112 REMARK 3 S31: 0.3206 S32: 0.3429 S33: -0.3894 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5911 3.6085 2.4313 REMARK 3 T TENSOR REMARK 3 T11: 0.2609 T22: 0.2142 REMARK 3 T33: 0.2835 T12: 0.0103 REMARK 3 T13: 0.0110 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 7.8070 L22: 6.8769 REMARK 3 L33: 4.3146 L12: 1.4612 REMARK 3 L13: 1.0779 L23: -2.4363 REMARK 3 S TENSOR REMARK 3 S11: -0.1640 S12: 0.4007 S13: 0.0335 REMARK 3 S21: -0.0724 S22: 0.3629 S23: -0.0677 REMARK 3 S31: 0.5678 S32: -0.1125 S33: -0.2793 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4244 12.4566 2.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.2505 REMARK 3 T33: 0.3458 T12: 0.0183 REMARK 3 T13: 0.0336 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 7.5966 L22: 6.0664 REMARK 3 L33: 5.6225 L12: 0.1190 REMARK 3 L13: 2.4952 L23: -2.4407 REMARK 3 S TENSOR REMARK 3 S11: -0.1383 S12: 0.2060 S13: 0.7810 REMARK 3 S21: 0.1489 S22: 0.1497 S23: 0.2401 REMARK 3 S31: -0.5872 S32: -0.1348 S33: 0.0025 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 61 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0997 2.2661 13.9502 REMARK 3 T TENSOR REMARK 3 T11: 0.8944 T22: 0.8330 REMARK 3 T33: 0.7167 T12: 0.0627 REMARK 3 T13: -0.4065 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 3.7929 L22: 8.1484 REMARK 3 L33: 3.0090 L12: -5.4848 REMARK 3 L13: 0.9859 L23: -2.6236 REMARK 3 S TENSOR REMARK 3 S11: 0.5569 S12: -0.6552 S13: -0.5947 REMARK 3 S21: 0.8483 S22: -0.3662 S23: -0.6195 REMARK 3 S31: 0.5614 S32: 0.9854 S33: -0.2596 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 78 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2194 -3.3317 4.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.3409 REMARK 3 T33: 0.2955 T12: 0.0587 REMARK 3 T13: 0.0009 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 7.6914 L22: 5.9124 REMARK 3 L33: 3.9751 L12: 5.7171 REMARK 3 L13: -3.3052 L23: -1.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: -0.2108 S13: -0.5505 REMARK 3 S21: -0.6299 S22: -0.2874 S23: -0.8009 REMARK 3 S31: 0.8328 S32: 0.4608 S33: 0.3367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 6WIQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.5, 25% W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.04050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -1.47596 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 43.28384 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 74 REMARK 465 MET A 75 REMARK 465 LEU A 76 REMARK 465 ASP A 77 REMARK 465 ASN A 78 REMARK 465 ARG A 79 REMARK 465 ALA A 80 REMARK 465 THR A 81 REMARK 465 LEU A 82 REMARK 465 GLN A 83 REMARK 465 GLU B 77 REMARK 465 ASP B 78 REMARK 465 VAL B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLN B 198 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 GLU C 73 REMARK 465 GLU C 74 REMARK 465 MET C 75 REMARK 465 LEU C 76 REMARK 465 ASP C 77 REMARK 465 ASN C 78 REMARK 465 ARG C 79 REMARK 465 ALA C 80 REMARK 465 THR C 81 REMARK 465 LEU C 82 REMARK 465 GLN C 83 REMARK 465 GLU D 77 REMARK 465 ALA D 194 REMARK 465 VAL D 195 REMARK 465 LYS D 196 REMARK 465 LEU D 197 REMARK 465 GLN D 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 193 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 125 46.27 -158.52 REMARK 500 ALA B 125 31.61 -88.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WQD RELATED DB: PDB REMARK 900 NSP7-NSP8, PROTEOLYZED REMARK 900 RELATED ID: 6WIQ RELATED DB: PDB REMARK 900 NSP7-NSP8, PROTEOLYZED REMARK 900 RELATED ID: IDP50000.414 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: IDP51000.414 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: IDP51000.413 RELATED DB: TARGETTRACK DBREF 6WTC A 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 6WTC B 77 198 UNP P0DTD1 R1AB_SARS2 4019 4140 DBREF 6WTC C 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 6WTC D 77 198 UNP P0DTD1 R1AB_SARS2 4019 4140 SEQADV 6WTC SER A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 6WTC ASN A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 6WTC ALA A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 6WTC SER C -2 UNP P0DTD1 EXPRESSION TAG SEQADV 6WTC ASN C -1 UNP P0DTD1 EXPRESSION TAG SEQADV 6WTC ALA C 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 86 SER ASN ALA SER LYS MET SER ASP VAL LYS CYS THR SER SEQRES 2 A 86 VAL VAL LEU LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SEQRES 3 A 86 SER SER SER LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS SEQRES 4 A 86 ASN ASP ILE LEU LEU ALA LYS ASP THR THR GLU ALA PHE SEQRES 5 A 86 GLU LYS MET VAL SER LEU LEU SER VAL LEU LEU SER MET SEQRES 6 A 86 GLN GLY ALA VAL ASP ILE ASN LYS LEU CYS GLU GLU MET SEQRES 7 A 86 LEU ASP ASN ARG ALA THR LEU GLN SEQRES 1 B 122 GLU ASP LYS ARG ALA LYS VAL THR SER ALA MET GLN THR SEQRES 2 B 122 MET LEU PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA SEQRES 3 B 122 LEU ASN ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL SEQRES 4 B 122 PRO LEU ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU SEQRES 5 B 122 MET VAL VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR SEQRES 6 B 122 CYS ASP GLY THR THR PHE THR TYR ALA SER ALA LEU TRP SEQRES 7 B 122 GLU ILE GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL SEQRES 8 B 122 GLN LEU SER GLU ILE SER MET ASP ASN SER PRO ASN LEU SEQRES 9 B 122 ALA TRP PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER SEQRES 10 B 122 ALA VAL LYS LEU GLN SEQRES 1 C 86 SER ASN ALA SER LYS MET SER ASP VAL LYS CYS THR SER SEQRES 2 C 86 VAL VAL LEU LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SEQRES 3 C 86 SER SER SER LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS SEQRES 4 C 86 ASN ASP ILE LEU LEU ALA LYS ASP THR THR GLU ALA PHE SEQRES 5 C 86 GLU LYS MET VAL SER LEU LEU SER VAL LEU LEU SER MET SEQRES 6 C 86 GLN GLY ALA VAL ASP ILE ASN LYS LEU CYS GLU GLU MET SEQRES 7 C 86 LEU ASP ASN ARG ALA THR LEU GLN SEQRES 1 D 122 GLU ASP LYS ARG ALA LYS VAL THR SER ALA MET GLN THR SEQRES 2 D 122 MET LEU PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA SEQRES 3 D 122 LEU ASN ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL SEQRES 4 D 122 PRO LEU ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU SEQRES 5 D 122 MET VAL VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR SEQRES 6 D 122 CYS ASP GLY THR THR PHE THR TYR ALA SER ALA LEU TRP SEQRES 7 D 122 GLU ILE GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL SEQRES 8 D 122 GLN LEU SER GLU ILE SER MET ASP ASN SER PRO ASN LEU SEQRES 9 D 122 ALA TRP PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER SEQRES 10 D 122 ALA VAL LYS LEU GLN HET ACY B 201 4 HET ACY C 301 4 HETNAM ACY ACETIC ACID FORMUL 5 ACY 2(C2 H4 O2) FORMUL 7 HOH *80(H2 O) HELIX 1 AA1 SER A 1 LEU A 20 1 20 HELIX 2 AA2 SER A 26 ALA A 42 1 17 HELIX 3 AA3 ASP A 44 MET A 62 1 19 HELIX 4 AA4 ASP A 67 CYS A 72 1 6 HELIX 5 AA5 ARG B 80 ASP B 99 1 20 HELIX 6 AA6 ASN B 100 ASP B 112 1 13 HELIX 7 AA7 ASP B 134 THR B 141 1 8 HELIX 8 AA8 GLN B 168 ILE B 172 5 5 HELIX 9 AA9 ASN B 176 LEU B 180 5 5 HELIX 10 AB1 SER C 1 LEU C 20 1 20 HELIX 11 AB2 ARG C 21 SER C 24 5 4 HELIX 12 AB3 SER C 25 LEU C 41 1 17 HELIX 13 AB4 ASP C 44 SER C 61 1 18 HELIX 14 AB5 ASP C 67 CYS C 72 1 6 HELIX 15 AB6 LYS D 79 ASP D 99 1 21 HELIX 16 AB7 ASN D 100 ASP D 112 1 13 HELIX 17 AB8 ASP D 134 THR D 141 1 8 HELIX 18 AB9 GLN D 168 ILE D 172 5 5 HELIX 19 AC1 ASN D 176 LEU D 180 5 5 SHEET 1 AA1 5 LYS B 127 ILE B 132 0 SHEET 2 AA1 5 LEU B 184 ARG B 190 -1 O LEU B 184 N ILE B 132 SHEET 3 AA1 5 ALA B 152 VAL B 160 -1 N GLN B 157 O THR B 187 SHEET 4 AA1 5 THR B 146 TYR B 149 -1 N PHE B 147 O TRP B 154 SHEET 5 AA1 5 CYS B 142 ASP B 143 -1 N ASP B 143 O THR B 146 SHEET 1 AA2 5 LYS D 127 ILE D 132 0 SHEET 2 AA2 5 LEU D 184 ARG D 190 -1 O LEU D 184 N ILE D 132 SHEET 3 AA2 5 ALA D 152 VAL D 160 -1 N GLU D 155 O LEU D 189 SHEET 4 AA2 5 THR D 146 TYR D 149 -1 N PHE D 147 O TRP D 154 SHEET 5 AA2 5 CYS D 142 ASP D 143 -1 N ASP D 143 O THR D 146 SSBOND 1 CYS A 8 CYS C 8 1555 1556 2.04 CISPEP 1 TRP B 182 PRO B 183 0 2.93 CISPEP 2 TRP D 182 PRO D 183 0 0.37 SITE 1 AC1 3 VAL A 53 ALA B 150 ARG B 190 SITE 1 AC2 3 ARG C 21 ASP D 78 ARG D 80 CRYST1 35.590 120.081 43.309 90.00 91.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028098 0.000000 0.000958 0.00000 SCALE2 0.000000 0.008328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023103 0.00000