HEADER HYDROLASE 04-MAY-20 6WUI TITLE CRYSTAL STRUCTURE OF MUTANT S. POMBE RAI1 (E150S/E199Q/E239Q) IN TITLE 2 COMPLEX WITH 3'-FADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECAPPING NUCLEASE DIN1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHP1-INTERACTING PROTEIN 1; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: DIN1, SPAC19D5.06C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAD, 3'-FADP, RNA, CAP, DECAPPING, HYDROLASE, RAI1 EXPDTA X-RAY DIFFRACTION AUTHOR S.K.DOAMEKPOR,L.TONG REVDAT 3 18-OCT-23 6WUI 1 REMARK REVDAT 2 24-JUN-20 6WUI 1 JRNL REVDAT 1 20-MAY-20 6WUI 0 JRNL AUTH S.K.DOAMEKPOR,E.GRUDZIEN-NOGALSKA,A.MLYNARSKA-CIESLAK, JRNL AUTH 2 J.KOWALSKA,M.KILEDJIAN,L.TONG JRNL TITL DXO/RAI1 ENZYMES REMOVE 5'-END FAD AND DEPHOSPHO-COA CAPS ON JRNL TITL 2 RNAS. JRNL REF NUCLEIC ACIDS RES. V. 48 6136 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32374864 JRNL DOI 10.1093/NAR/GKAA297 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.4700 - 4.5900 0.98 2285 146 0.1436 0.1810 REMARK 3 2 4.5800 - 3.6400 0.98 2233 142 0.1351 0.2011 REMARK 3 3 3.6400 - 3.1800 0.99 2259 145 0.1756 0.1853 REMARK 3 4 3.1800 - 2.8900 1.00 2253 143 0.1975 0.2239 REMARK 3 5 2.8900 - 2.6800 1.00 2247 144 0.1984 0.2236 REMARK 3 6 2.6800 - 2.5200 0.99 2245 143 0.1986 0.2137 REMARK 3 7 2.5200 - 2.4000 0.98 2206 141 0.1979 0.2559 REMARK 3 8 2.4000 - 2.2900 0.99 2234 142 0.2008 0.2426 REMARK 3 9 2.2900 - 2.2000 0.99 2217 141 0.2013 0.2428 REMARK 3 10 2.2000 - 2.1300 1.00 2260 144 0.2000 0.2323 REMARK 3 11 2.1300 - 2.0600 1.00 2235 143 0.2200 0.2726 REMARK 3 12 2.0600 - 2.0000 1.00 2246 144 0.2254 0.2572 REMARK 3 13 2.0000 - 1.9500 1.00 2226 142 0.2422 0.2789 REMARK 3 14 1.9500 - 1.9000 0.98 2191 139 0.2684 0.2688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2718 REMARK 3 ANGLE : 1.329 3703 REMARK 3 CHIRALITY : 0.061 397 REMARK 3 PLANARITY : 0.008 457 REMARK 3 DIHEDRAL : 15.095 356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 51.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.085 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.14 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3FQG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 3350, 0.2M MGCL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.64600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.21400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.64600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.21400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 597 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 GLU A 133 REMARK 465 THR A 134 REMARK 465 SER A 135 REMARK 465 TYR A 136 REMARK 465 ALA A 137 REMARK 465 CYS A 162 REMARK 465 SER A 163 REMARK 465 ARG A 164 REMARK 465 ASP A 165 REMARK 465 GLN A 166 REMARK 465 ILE A 167 REMARK 465 GLU A 168 REMARK 465 GLN A 169 REMARK 465 ARG A 170 REMARK 465 ASP A 171 REMARK 465 CYS A 209 REMARK 465 SER A 210 REMARK 465 ALA A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 213 REMARK 465 SER A 214 REMARK 465 ASP A 215 REMARK 465 VAL A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 ASP A 219 REMARK 465 ASP A 220 REMARK 465 GLY A 221 REMARK 465 THR A 222 REMARK 465 ILE A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 465 ASP A 226 REMARK 465 ALA A 227 REMARK 465 SER A 228 REMARK 465 ASN A 229 REMARK 465 ALA A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 244 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 87 64.68 -111.62 REMARK 500 ASP A 205 -158.97 -151.99 REMARK 500 GLN A 329 21.85 -70.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UBG A 401 DBREF 6WUI A 1 352 UNP O13836 DXO_SCHPO 1 352 SEQADV 6WUI MET A -19 UNP O13836 INITIATING METHIONINE SEQADV 6WUI GLY A -18 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A -17 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A -16 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -15 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -14 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -13 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -12 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -11 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A -10 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A -9 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A -8 UNP O13836 EXPRESSION TAG SEQADV 6WUI GLY A -7 UNP O13836 EXPRESSION TAG SEQADV 6WUI LEU A -6 UNP O13836 EXPRESSION TAG SEQADV 6WUI VAL A -5 UNP O13836 EXPRESSION TAG SEQADV 6WUI PRO A -4 UNP O13836 EXPRESSION TAG SEQADV 6WUI ARG A -3 UNP O13836 EXPRESSION TAG SEQADV 6WUI GLY A -2 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A -1 UNP O13836 EXPRESSION TAG SEQADV 6WUI HIS A 0 UNP O13836 EXPRESSION TAG SEQADV 6WUI SER A 150 UNP O13836 GLU 150 ENGINEERED MUTATION SEQADV 6WUI GLN A 199 UNP O13836 GLU 199 ENGINEERED MUTATION SEQADV 6WUI GLN A 239 UNP O13836 GLU 239 ENGINEERED MUTATION SEQRES 1 A 372 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 372 LEU VAL PRO ARG GLY SER HIS MET LEU ARG GLU PHE SER SEQRES 3 A 372 PHE TYR ASP VAL PRO PRO ALA HIS VAL PRO PRO VAL SER SEQRES 4 A 372 GLU PRO LEU GLU ILE ALA CYS TYR SER LEU SER ARG ASP SEQRES 5 A 372 ARG GLU LEU LEU LEU ASP ASP SER LYS LEU SER TYR TYR SEQRES 6 A 372 TYR PRO PRO PRO LEU PHE SER ASP LEU ASN THR GLY PHE SEQRES 7 A 372 PRO ASN ARG PHE HIS PRO PRO LYS SER ASP PRO ASP PRO SEQRES 8 A 372 ILE SER ILE VAL LYS ASP VAL LEU MET THR LYS GLY ILE SEQRES 9 A 372 GLN MET ASN SER SER PHE LEU THR TRP ARG GLY LEU ILE SEQRES 10 A 372 THR LYS ILE MET CYS ALA PRO LEU ASP PRO ARG ASN HIS SEQRES 11 A 372 TRP GLU THR TYR LEU VAL MET ASP PRO THR SER GLY ILE SEQRES 12 A 372 ILE MET MET GLU GLU ARG THR ARG SER GLU THR SER TYR SEQRES 13 A 372 ALA ASN GLN ASP ARG MET CYS TYR TRP GLY TYR LYS PHE SEQRES 14 A 372 SER ALA ILE SER THR LEU PRO GLU ILE TRP ASP ALA CYS SEQRES 15 A 372 SER ARG ASP GLN ILE GLU GLN ARG ASP ASN GLN ASP VAL SEQRES 16 A 372 VAL PRO ASP GLU GLN TYR CYS SER ILE VAL LYS ILE ASN SEQRES 17 A 372 ILE GLY LYS SER LYS LEU ILE LEU ALA GLY GLN VAL ASP SEQRES 18 A 372 CYS ILE TRP ASP LYS LYS PRO CYS SER ALA LYS GLU SER SEQRES 19 A 372 ASP VAL HIS SER ASP ASP GLY THR ILE GLU GLU ASP ALA SEQRES 20 A 372 SER ASN ALA GLU ASN PRO ASN LEU HIS TYR VAL GLN LEU SEQRES 21 A 372 LYS THR SER LYS LYS TYR PRO LEU GLU ASN TYR GLY MET SEQRES 22 A 372 ARG LYS LYS LEU LEU LYS TYR TRP ALA GLN SER PHE LEU SEQRES 23 A 372 LEU GLY ILE GLY ARG ILE ILE ILE GLY PHE ARG ASP ASP SEQRES 24 A 372 ASN GLY ILE LEU ILE GLU MET LYS GLU LEU PHE THR HIS SEQRES 25 A 372 GLN ILE PRO LYS MET LEU ARG PRO TYR PHE LYS PRO ASN SEQRES 26 A 372 ASP TRP THR PRO ASN ARG LEU LEU VAL VAL LEU GLU HIS SEQRES 27 A 372 ALA LEU GLU TRP ILE LYS GLN THR VAL LYS GLN HIS PRO SEQRES 28 A 372 PRO SER THR GLU PHE THR LEU SER TYR THR GLY GLY SER SEQRES 29 A 372 LYS LEU VAL LEU ARG GLN ILE ILE HET UBG A 401 57 HETNAM UBG [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3- HETNAM 2 UBG (PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S)- HETNAM 3 UBG 5-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN- HETNAM 4 UBG 10(2H)-YL)-2,3,4-TRIHYDROXYPENTYL DIHYDROGEN HETNAM 5 UBG DIPHOSPHATE (NON-PREFERRED NAME) FORMUL 2 UBG C27 H34 N9 O18 P3 FORMUL 3 HOH *139(H2 O) HELIX 1 AA1 TYR A 8 VAL A 10 5 3 HELIX 2 AA2 ILE A 72 LYS A 82 1 11 HELIX 3 AA3 ARG A 94 ALA A 103 1 10 HELIX 4 AA4 ASP A 140 SER A 153 1 14 HELIX 5 AA5 PRO A 233 LEU A 235 5 3 HELIX 6 AA6 ASN A 250 LEU A 267 1 18 HELIX 7 AA7 HIS A 292 ARG A 299 1 8 HELIX 8 AA8 PRO A 300 PHE A 302 5 3 HELIX 9 AA9 THR A 308 GLN A 329 1 22 SHEET 1 AA110 LEU A 2 SER A 6 0 SHEET 2 AA110 LYS A 345 GLN A 350 -1 O LEU A 348 N ARG A 3 SHEET 3 AA110 GLU A 335 TYR A 340 -1 N SER A 339 O VAL A 347 SHEET 4 AA110 TRP A 111 MET A 117 -1 N THR A 113 O LEU A 338 SHEET 5 AA110 ILE A 124 GLU A 127 -1 O GLU A 127 N TYR A 114 SHEET 6 AA110 PHE A 90 TRP A 93 1 N LEU A 91 O ILE A 124 SHEET 7 AA110 SER A 192 VAL A 200 1 O ILE A 195 N PHE A 90 SHEET 8 AA110 GLN A 180 ILE A 189 -1 N VAL A 185 O LEU A 196 SHEET 9 AA110 LEU A 22 LEU A 29 -1 N ILE A 24 O ILE A 184 SHEET 10 AA110 LEU A 35 LEU A 36 -1 O LEU A 36 N SER A 28 SHEET 1 AA2 2 TYR A 44 TYR A 45 0 SHEET 2 AA2 2 THR A 154 LEU A 155 -1 O LEU A 155 N TYR A 44 SHEET 1 AA3 4 CYS A 202 ILE A 203 0 SHEET 2 AA3 4 TYR A 237 SER A 243 -1 O VAL A 238 N CYS A 202 SHEET 3 AA3 4 ARG A 271 ARG A 277 1 O GLY A 275 N LYS A 241 SHEET 4 AA3 4 LEU A 283 PHE A 290 -1 O ILE A 284 N PHE A 276 CISPEP 1 PHE A 58 PRO A 59 0 -2.98 SITE 1 AC1 33 PRO A 65 LYS A 66 SER A 67 ASP A 68 SITE 2 AC1 33 PRO A 69 ASP A 70 TRP A 93 ARG A 94 SITE 3 AC1 33 GLY A 95 GLU A 128 THR A 130 ASN A 138 SITE 4 AC1 33 TYR A 147 GLN A 180 ALA A 197 GLY A 198 SITE 5 AC1 33 GLN A 199 GLN A 239 LYS A 241 GLN A 263 SITE 6 AC1 33 HOH A 503 HOH A 505 HOH A 509 HOH A 519 SITE 7 AC1 33 HOH A 520 HOH A 531 HOH A 534 HOH A 538 SITE 8 AC1 33 HOH A 550 HOH A 555 HOH A 564 HOH A 566 SITE 9 AC1 33 HOH A 611 CRYST1 101.292 60.428 72.788 90.00 104.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009872 0.000000 0.002484 0.00000 SCALE2 0.000000 0.016549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014167 0.00000