HEADER OXIDOREDUCTASE, FLUORESCENT PROTEIN 05-MAY-20 6WV3 TITLE HUMAN VKOR WITH WARFARIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN K EPOXIDE REDUCTASE, TERMINI RESTRAINED BY GREEN COMPND 3 FLUORESCENT PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: GPF (UNP RESIDUES 1-144) + VKOR + GFP (UNP RESIDUES 146- COMPND 6 231); COMPND 7 SYNONYM: VITAMIN K1 2,3-EPOXIDE REDUCTASE SUBUNIT 1; COMPND 8 EC: 1.17.4.4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, HUMAN; SOURCE 4 ORGANISM_TAXID: 6100, 9606; SOURCE 5 GENE: GFP, VKORC1, VKOR, MSTP134, MSTP576, UNQ308/PRO351; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS VITAMIN K EPOXIDE REDUCTASE (VKOR), VITAMIN K, WARFARIN, KEYWDS 2 SUPERWARFARIN, VITAMIN K EXPOXIDE(KO), MEMBRANE PROTEIN, KEYWDS 3 OXIDOREDUCTASE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,N.SUKUMAR,W.LI REVDAT 5 15-NOV-23 6WV3 1 REMARK REVDAT 4 18-OCT-23 6WV3 1 REMARK REVDAT 3 13-JAN-21 6WV3 1 JRNL REVDAT 2 25-NOV-20 6WV3 1 JRNL REVDAT 1 11-NOV-20 6WV3 0 JRNL AUTH S.LIU,S.LI,G.SHEN,N.SUKUMAR,A.M.KREZEL,W.LI JRNL TITL STRUCTURAL BASIS OF ANTAGONIZING THE VITAMIN K CATALYTIC JRNL TITL 2 CYCLE FOR ANTICOAGULATION. JRNL REF SCIENCE V. 371 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33154105 JRNL DOI 10.1126/SCIENCE.ABC5667 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.LIU,S.LI,Y.YANG,W.LI REMARK 1 TITL TERMINI RESTRAINING OF SMALL MEMBRANE PROTEINS ENABLES REMARK 1 TITL 2 STRUCTURE DETERMINATION AT ATOMIC RESOLUTION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 24903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1530 - 4.5651 0.83 2546 123 0.1840 0.1983 REMARK 3 2 4.5651 - 3.6251 0.88 2556 126 0.1722 0.2008 REMARK 3 3 3.6251 - 3.1673 0.94 2683 136 0.1944 0.1962 REMARK 3 4 3.1673 - 2.8779 0.95 2744 136 0.2094 0.2424 REMARK 3 5 2.8779 - 2.6717 0.92 2597 138 0.2250 0.2505 REMARK 3 6 2.6717 - 2.5143 0.96 2691 148 0.2237 0.2285 REMARK 3 7 2.5143 - 2.3884 0.96 2728 130 0.2295 0.2865 REMARK 3 8 2.3884 - 2.2845 0.96 2696 128 0.2418 0.2735 REMARK 3 9 2.2845 - 2.1970 0.88 2457 140 0.2704 0.2904 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3149 REMARK 3 ANGLE : 0.577 4257 REMARK 3 CHIRALITY : 0.044 473 REMARK 3 PLANARITY : 0.003 533 REMARK 3 DIHEDRAL : 14.779 1822 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4570 12.7366 56.4163 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1777 REMARK 3 T33: 0.1720 T12: 0.0367 REMARK 3 T13: -0.0376 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.8475 L22: 2.7497 REMARK 3 L33: 3.9758 L12: -0.1902 REMARK 3 L13: -0.3270 L23: 0.5842 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.0591 S13: -0.1559 REMARK 3 S21: -0.1138 S22: 0.0058 S23: -0.0795 REMARK 3 S31: 0.2473 S32: 0.2058 S33: -0.0704 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5938 23.9621 57.5501 REMARK 3 T TENSOR REMARK 3 T11: 0.2703 T22: 0.3834 REMARK 3 T33: 0.5556 T12: -0.0119 REMARK 3 T13: -0.1370 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.3905 L22: 2.6047 REMARK 3 L33: 2.7802 L12: 1.0340 REMARK 3 L13: 0.9360 L23: 0.4256 REMARK 3 S TENSOR REMARK 3 S11: 0.3935 S12: 0.2875 S13: -0.9525 REMARK 3 S21: -0.1395 S22: -0.1448 S23: 0.2558 REMARK 3 S31: 0.1867 S32: 0.0139 S33: -0.1717 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9061 19.9103 47.4291 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.2481 REMARK 3 T33: 0.1715 T12: 0.0053 REMARK 3 T13: -0.0155 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.1875 L22: 2.3329 REMARK 3 L33: 5.2849 L12: -0.9176 REMARK 3 L13: -1.7733 L23: 1.7363 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: 0.1925 S13: 0.0503 REMARK 3 S21: -0.3650 S22: 0.0703 S23: -0.1253 REMARK 3 S31: -0.1426 S32: 0.2079 S33: -0.1577 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7215 8.7060 54.6495 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1914 REMARK 3 T33: 0.2225 T12: 0.0486 REMARK 3 T13: 0.0053 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.8029 L22: 4.2637 REMARK 3 L33: 2.3182 L12: -0.6466 REMARK 3 L13: 0.9009 L23: -1.1795 REMARK 3 S TENSOR REMARK 3 S11: 0.1477 S12: 0.1972 S13: -0.1859 REMARK 3 S21: 0.0062 S22: 0.1740 S23: 0.3289 REMARK 3 S31: 0.1225 S32: -0.2369 S33: -0.3111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37% PEG400, 0.1 M MES, PH 6.5, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 76.58050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.42700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.58050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.42700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C3 OLC A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 OE1 OE2 REMARK 470 SER A 299 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 621 O HOH A 634 2.03 REMARK 500 O HOH A 603 O HOH A 610 2.09 REMARK 500 O HOH A 632 O HOH A 634 2.11 REMARK 500 OE2 GLU A 324 O HOH A 501 2.12 REMARK 500 OD1 ASN A 219 O HOH A 502 2.14 REMARK 500 OE2 GLU A 90 O HOH A 503 2.17 REMARK 500 NE2 GLN A 356 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C4 OLC A 401 C3 OLC A 401 2565 1.53 REMARK 500 C3 OLC A 401 C2 OLC A 401 2565 1.53 REMARK 500 C4 OLC A 401 C2 OLC A 401 2565 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -159.63 -151.07 REMARK 500 TYR A 143 -66.06 -92.22 REMARK 500 ASN A 144 28.40 -151.44 REMARK 500 PHE A 205 18.91 57.64 REMARK 500 PHE A 268 -28.05 64.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 644 DISTANCE = 5.85 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 401 REMARK 610 OLC A 402 REMARK 610 OLC A 403 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SWF A 404 DBREF1 6WV3 A 1 144 UNP A0A059PIQ0_AEQVI DBREF2 6WV3 A A0A059PIQ0 1 144 DBREF 6WV3 A 145 297 UNP Q9BQB6 VKOR1_HUMAN 3 155 DBREF1 6WV3 A 298 383 UNP A0A059PIQ0_AEQVI DBREF2 6WV3 A A0A059PIQ0 146 231 SEQADV 6WV3 SER A 2 UNP A0A059PIQ ARG 2 CONFLICT SEQADV 6WV3 ARG A 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 6WV3 CRO A 66 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 6WV3 CRO A 66 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 6WV3 CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 6WV3 SER A 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 6WV3 ARG A 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 6WV3 VAL A 358 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 6WV3 HIS A 384 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 385 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 386 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 387 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 388 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 389 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 390 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 391 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV3 HIS A 392 UNP A0A059PIQ EXPRESSION TAG SEQRES 1 A 390 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 390 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 390 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 A 390 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 390 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 A 390 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 390 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 390 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 A 390 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 390 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 390 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SER SEQRES 12 A 390 THR TRP GLY SER PRO GLY TRP VAL ARG LEU ALA LEU CYS SEQRES 13 A 390 LEU THR GLY LEU VAL LEU SER LEU TYR ALA LEU HIS VAL SEQRES 14 A 390 LYS ALA ALA ARG ALA ARG ASP ARG ASP TYR ARG ALA LEU SEQRES 15 A 390 CYS ASP VAL GLY THR ALA ILE SER CYS SER ARG VAL PHE SEQRES 16 A 390 SER SER ARG TRP GLY ARG GLY PHE GLY LEU VAL GLU HIS SEQRES 17 A 390 VAL LEU GLY GLN ASP SER ILE LEU ASN GLN SER ASN SER SEQRES 18 A 390 ILE PHE GLY CYS ILE PHE TYR THR LEU GLN LEU LEU LEU SEQRES 19 A 390 GLY CYS LEU ARG THR ARG TRP ALA SER VAL LEU MET LEU SEQRES 20 A 390 LEU SER SER LEU VAL SER LEU ALA GLY SER VAL TYR LEU SEQRES 21 A 390 ALA TRP ILE LEU PHE PHE VAL LEU TYR ASP PHE CYS ILE SEQRES 22 A 390 VAL CYS ILE THR THR TYR ALA ILE ASN VAL SER LEU MET SEQRES 23 A 390 TRP LEU SER PHE ARG LYS VAL GLN GLU ASN SER HIS ASN SEQRES 24 A 390 VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY ILE LYS SEQRES 25 A 390 ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU ASP GLY SER SEQRES 26 A 390 VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR PRO ILE SEQRES 27 A 390 GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SEQRES 28 A 390 SER THR GLN SER VAL LEU SER LYS ASP PRO ASN GLU LYS SEQRES 29 A 390 ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA ALA SEQRES 30 A 390 GLY ILE THR HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 6WV3 CRO A 66 THR CHROMOPHORE MODRES 6WV3 CRO A 66 TYR CHROMOPHORE MODRES 6WV3 CRO A 66 GLY CHROMOPHORE HET CRO A 66 22 HET OLC A 401 10 HET OLC A 402 11 HET OLC A 403 8 HET SWF A 404 23 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM SWF S-WARFARIN HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 OLC 3(C21 H40 O4) FORMUL 5 SWF C19 H16 O4 FORMUL 6 HOH *144(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 GLY A 151 ALA A 176 1 26 HELIX 7 AA7 CYS A 193 SER A 198 1 6 HELIX 8 AA8 SER A 199 GLY A 206 5 8 HELIX 9 AA9 LEU A 207 LEU A 212 1 6 HELIX 10 AB1 SER A 221 CYS A 238 1 18 HELIX 11 AB2 THR A 241 PHE A 267 1 27 HELIX 12 AB3 CYS A 274 ASN A 298 1 25 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 369 ALA A 379 -1 O LEU A 372 N LEU A 44 SHEET 5 AA112 HIS A 351 SER A 360 -1 N SER A 354 O THR A 377 SHEET 6 AA112 ASN A 301 ASP A 307 -1 N ILE A 304 O HIS A 351 SHEET 7 AA112 GLY A 312 ASN A 322 -1 O LYS A 314 N THR A 305 SHEET 8 AA112 VAL A 328 PRO A 339 -1 O HIS A 333 N PHE A 317 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 338 SHEET 10 AA112 THR A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SSBOND 1 CYS A 185 CYS A 193 1555 1555 2.03 SSBOND 2 CYS A 274 CYS A 277 1555 1555 2.03 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.41 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.42 CISPEP 1 MET A 88 PRO A 89 0 2.80 SITE 1 AC1 4 ILE A 275 THR A 279 ALA A 282 ILE A 283 SITE 1 AC2 10 SER A 165 PHE A 205 SER A 223 PHE A 225 SITE 2 AC2 10 GLY A 226 TYR A 230 SER A 255 THR A 280 SITE 3 AC2 10 ASN A 284 SWF A 404 SITE 1 AC3 3 TYR A 167 CYS A 185 VAL A 276 SITE 1 AC4 10 ALA A 168 VAL A 196 ASN A 222 SER A 259 SITE 2 AC4 10 LEU A 262 VAL A 276 CYS A 277 THR A 280 SITE 3 AC4 10 TYR A 281 OLC A 402 CRYST1 153.161 70.854 47.356 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021117 0.00000