HEADER MEMBRANE PROTEIN 05-MAY-20 6WV8 TITLE TAKIFUGU RUBRIPES VKOR-LIKE C138S MUTANT WITH VITAMIN K1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN K EPOXIDE REDUCTASE-LIKE PROTEIN, TERMINI COMPND 3 RESTRAINED BY GREEN FLUORESCENT PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS RB43, TAKIFUGU RUBRIPES, SOURCE 3 AEQUOREA VICTORIA; SOURCE 4 ORGANISM_COMMON: JAPANESE PUFFERFISH, JELLYFISH; SOURCE 5 ORGANISM_TAXID: 115991, 31033, 6100; SOURCE 6 GENE: VKORC1L1, GFP; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS VITAMIN K EPOXIDE REDUCTASE, VKOR, VKOR-LIKE PROTEIN, VKORL, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,N.SUKUMAR,W.LI REVDAT 6 16-OCT-24 6WV8 1 REMARK REVDAT 5 15-NOV-23 6WV8 1 ATOM REVDAT 4 18-OCT-23 6WV8 1 REMARK REVDAT 3 13-JAN-21 6WV8 1 JRNL REVDAT 2 25-NOV-20 6WV8 1 JRNL REVDAT 1 11-NOV-20 6WV8 0 JRNL AUTH S.LIU,S.LI,G.SHEN,N.SUKUMAR,A.M.KREZEL,W.LI JRNL TITL STRUCTURAL BASIS OF ANTAGONIZING THE VITAMIN K CATALYTIC JRNL TITL 2 CYCLE FOR ANTICOAGULATION. JRNL REF SCIENCE V. 371 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33154105 JRNL DOI 10.1126/SCIENCE.ABC5667 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.LIU,S.LI,Y.YANG,W.LI REMARK 1 TITL TERMINI RESTRAINING OF SMALL MEMBRANE PROTEINS ENABLES REMARK 1 TITL 2 STRUCTURE DETERMINATION AT ATOMIC RESOLUTION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 10953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5700 - 4.7700 0.94 2778 147 0.2390 0.2731 REMARK 3 2 4.7700 - 3.7900 0.89 2476 157 0.2437 0.2892 REMARK 3 3 3.7900 - 3.3100 0.95 2642 144 0.2681 0.3202 REMARK 3 4 3.3100 - 3.0100 0.90 2487 122 0.3134 0.3314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8765 -1.5633 2.2434 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.1881 REMARK 3 T33: 0.3486 T12: -0.0552 REMARK 3 T13: 0.0113 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 5.0862 L22: 4.6020 REMARK 3 L33: 3.6953 L12: -2.0778 REMARK 3 L13: 0.4941 L23: -0.4773 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.0724 S13: -0.3286 REMARK 3 S21: -0.3107 S22: 0.0793 S23: 0.2863 REMARK 3 S31: 0.3641 S32: -0.0418 S33: 0.0226 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.5201 -0.6434 49.3097 REMARK 3 T TENSOR REMARK 3 T11: 0.6943 T22: 0.6320 REMARK 3 T33: 0.4860 T12: -0.0390 REMARK 3 T13: -0.0269 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 3.6249 L22: 2.5663 REMARK 3 L33: 5.2820 L12: 1.5369 REMARK 3 L13: 0.7307 L23: 0.2490 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: 0.8568 S13: 0.1145 REMARK 3 S21: -0.8804 S22: -0.0423 S23: 0.1381 REMARK 3 S31: -0.2072 S32: 0.4838 S33: 0.1631 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2080 7.4027 7.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.3222 REMARK 3 T33: 0.3217 T12: -0.0321 REMARK 3 T13: -0.0451 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 3.6150 L22: 4.8023 REMARK 3 L33: 0.9232 L12: -3.3364 REMARK 3 L13: 0.2589 L23: -1.0404 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: -0.3885 S13: 0.1858 REMARK 3 S21: 0.2096 S22: 0.0197 S23: -0.4472 REMARK 3 S31: 0.2213 S32: 0.0946 S33: 0.0922 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10986 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 300 MM AMMONIUM FLUORIDE, REMARK 280 0.1 M MES PH 6.0, LIPIDIC CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.58350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.60550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.60550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.58350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 305 REMARK 465 LYS A 306 REMARK 465 GLN A 307 REMARK 465 LYS A 308 REMARK 465 LEU A 309 REMARK 465 GLN A 310 REMARK 465 ALA A 311 REMARK 465 LYS A 312 REMARK 465 GLN A 313 REMARK 465 ASP A 314 REMARK 465 SER A 408 REMARK 465 ASN A 409 REMARK 465 SER A 410 REMARK 465 LEU A 411 REMARK 465 GLU A 412 REMARK 465 VAL A 413 REMARK 465 LEU A 414 REMARK 465 PHE A 415 REMARK 465 GLN A 416 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 188 HG CYS A 196 1.23 REMARK 500 OD1 ASP A 189 H CYS A 196 1.54 REMARK 500 HG SER A 255 OD1 ASN A 294 1.58 REMARK 500 HZ1 LYS A 45 OE2 GLU A 382 1.60 REMARK 500 O LYS A 198 OG SER A 202 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 76 HZ1 LYS A 327 4455 1.59 REMARK 500 NE2 HIS A 25 OE1 GLU A 32 4545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 25 106.12 -57.20 REMARK 500 ILE A 136 -71.68 -78.23 REMARK 500 TYR A 143 78.96 -105.01 REMARK 500 ASN A 144 165.18 176.80 REMARK 500 LEU A 145 74.88 -119.37 REMARK 500 PRO A 150 -172.86 -67.53 REMARK 500 GLU A 153 -42.01 80.67 REMARK 500 SER A 191 -173.71 -175.91 REMARK 500 SER A 193 -20.40 80.68 REMARK 500 LEU A 211 -25.60 74.45 REMARK 500 PHE A 271 -74.38 -91.93 REMARK 500 LEU A 405 86.12 -67.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PQN A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PQN A 501 DBREF 6WV8 A 1 144 UNP K0NYR4 K0NYR4_9CAUD 1 144 DBREF 6WV8 A 145 314 UNP Q6TEK8 Q6TEK8_TAKRU 6 175 DBREF1 6WV8 A 315 407 UNP A0A059PIQ0_AEQVI DBREF2 6WV8 A A0A059PIQ0 146 238 SEQADV 6WV8 ARG A 30 UNP K0NYR4 SER 30 CONFLICT SEQADV 6WV8 ASN A 39 UNP K0NYR4 TYR 39 CONFLICT SEQADV 6WV8 CRO A 66 UNP K0NYR4 THR 65 CHROMOPHORE SEQADV 6WV8 CRO A 66 UNP K0NYR4 TYR 66 CHROMOPHORE SEQADV 6WV8 CRO A 66 UNP K0NYR4 GLY 67 CHROMOPHORE SEQADV 6WV8 THR A 105 UNP K0NYR4 ASN 105 CONFLICT SEQADV 6WV8 SER A 277 UNP Q6TEK8 CYS 138 ENGINEERED MUTATION SEQADV 6WV8 VAL A 375 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 6WV8 SER A 408 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 ASN A 409 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 SER A 410 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 LEU A 411 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 GLU A 412 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 VAL A 413 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 LEU A 414 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 PHE A 415 UNP A0A059PIQ EXPRESSION TAG SEQADV 6WV8 GLN A 416 UNP A0A059PIQ EXPRESSION TAG SEQRES 1 A 414 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 414 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 414 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 A 414 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 414 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 A 414 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 414 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 414 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 A 414 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 414 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 414 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN LEU SEQRES 12 A 414 ARG VAL SER THR PRO ARG TRP GLU ARG ILE ALA ARG VAL SEQRES 13 A 414 LEU VAL CYS LEU LEU GLY ILE LEU LEU SER LEU TYR ALA SEQRES 14 A 414 PHE HIS VAL GLU ARG GLU HIS ALA ARG ASP PRO SER TYR SEQRES 15 A 414 LYS ALA LEU CYS ASP VAL SER SER SER ILE SER CYS SER SEQRES 16 A 414 LYS VAL PHE GLY SER ARG TRP GLY ARG GLY PHE GLY LEU SEQRES 17 A 414 LEU GLY SER ILE PHE GLY ASN ASP SER ALA LEU ASN GLN SEQRES 18 A 414 PRO ASN SER VAL TYR GLY ILE VAL PHE TYR ALA PHE GLN SEQRES 19 A 414 LEU LEU LEU GLY MET THR VAL SER ALA MET ALA ALA LEU SEQRES 20 A 414 ILE LEU MET THR THR SER ILE MET SER VAL VAL GLY SER SEQRES 21 A 414 LEU TYR LEU GLY TYR ILE LEU TYR PHE VAL LEU LYS ASP SEQRES 22 A 414 LEU SER VAL ILE CYS VAL THR THR TYR ALA LEU ASN PHE SEQRES 23 A 414 ILE LEU PHE VAL LEU ASN TYR LYS ARG LEU VAL TYR LEU SEQRES 24 A 414 ASN GLU ALA TRP LYS GLN LYS LEU GLN ALA LYS GLN ASP SEQRES 25 A 414 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 26 A 414 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL SEQRES 27 A 414 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 28 A 414 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 29 A 414 ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS ASP SEQRES 30 A 414 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 31 A 414 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 32 A 414 TYR LYS SER ASN SER LEU GLU VAL LEU PHE GLN MODRES 6WV8 CRO A 66 THR CHROMOPHORE MODRES 6WV8 CRO A 66 TYR CHROMOPHORE MODRES 6WV8 CRO A 66 GLY CHROMOPHORE HET CRO A 66 37 HET PQN A 501 28 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM PQN PHYLLOQUINONE HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN PQN VITAMIN K1; 2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 PQN C31 H46 O2 FORMUL 3 HOH *7(H2 O) HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 MET A 78 HIS A 81 5 4 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 PRO A 150 ALA A 179 1 30 HELIX 7 AA7 SER A 195 GLY A 201 1 7 HELIX 8 AA8 SER A 202 LEU A 210 5 9 HELIX 9 AA9 LEU A 211 GLY A 216 1 6 HELIX 10 AB1 PRO A 224 THR A 242 1 19 HELIX 11 AB2 SER A 244 PHE A 271 1 28 HELIX 12 AB3 SER A 277 TYR A 300 1 24 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O VAL A 29 N LEU A 18 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O THR A 43 N GLU A 34 SHEET 4 AA112 HIS A 386 ALA A 396 -1 O MET A 387 N PHE A 46 SHEET 5 AA112 HIS A 368 SER A 377 -1 N TYR A 369 O ALA A 396 SHEET 6 AA112 HIS A 317 ASP A 324 -1 N HIS A 317 O THR A 372 SHEET 7 AA112 GLY A 329 ASN A 339 -1 O LYS A 331 N THR A 322 SHEET 8 AA112 VAL A 345 PRO A 356 -1 O GLN A 346 N HIS A 338 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 355 SHEET 10 AA112 THR A 105 GLU A 115 -1 O THR A 108 N ARG A 96 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SSBOND 1 CYS A 188 CYS A 196 1555 1555 2.03 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.41 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.35 CISPEP 1 MET A 88 PRO A 89 0 2.65 SITE 1 AC1 13 VAL A 199 GLY A 205 PHE A 208 ASN A 225 SITE 2 AC1 13 GLY A 229 PHE A 232 THR A 254 SER A 258 SITE 3 AC1 13 LEU A 265 ILE A 268 CYS A 280 THR A 283 SITE 4 AC1 13 TYR A 284 CRYST1 55.167 61.490 167.211 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005980 0.00000