HEADER TRANSFERASE 10-MAY-20 6WXJ TITLE CSF1R SIGNALING IS A REGULATOR OF PATHOGENESIS IN PROGRESSIVE MS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSF-1 RECEPTOR,M-CSF-R,PROTO-ONCOGENE C-FMS; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1R, FMS; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CSF1R, INHIBITOR, TKI, MS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU REVDAT 2 18-OCT-23 6WXJ 1 REMARK REVDAT 1 10-FEB-21 6WXJ 0 JRNL AUTH N.HAGAN,J.L.KANE,D.GROVER,L.WOODWORTH,C.MADORE,J.SALEH, JRNL AUTH 2 J.SANCHO,J.LIU,Y.LI,J.PROTO,M.ZELIC,A.MAHAN,M.KOTHE, JRNL AUTH 3 A.A.SCHOLTE,M.FITZGERALD,B.GISEVIUS,A.HAGHIKIA,O.BUTOVSKY, JRNL AUTH 4 D.OFENGEIM JRNL TITL CSF1R SIGNALING IS A REGULATOR OF PATHOGENESIS IN JRNL TITL 2 PROGRESSIVE MS. JRNL REF CELL DEATH DIS V. 11 904 2020 JRNL PMID 33097690 JRNL DOI 10.1038/S41419-020-03084-7 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 2.44000 REMARK 3 B12 (A**2) : -0.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.851 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2315 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2129 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3134 ; 1.921 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4940 ; 1.302 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 8.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;38.703 ;23.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;20.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2551 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 480 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 559 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2498 24.5645 2.8480 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.1239 REMARK 3 T33: 0.3739 T12: 0.0185 REMARK 3 T13: -0.0358 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.8007 L22: 1.5886 REMARK 3 L33: 0.2376 L12: -1.0979 REMARK 3 L13: -0.7676 L23: 0.4882 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.5489 S13: -0.1854 REMARK 3 S21: 0.2598 S22: 0.0117 S23: -0.1232 REMARK 3 S31: 0.0637 S32: -0.0878 S33: 0.0741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6WXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3DPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 21.3% POLYETHYLENE REMARK 280 GLYCOL 3350 AND 0.25 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.26000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.24412 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.02000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.26000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.24412 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.02000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.26000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.24412 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.02000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.48824 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.04000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.48824 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.04000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.48824 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 538 REMARK 465 LYS A 539 REMARK 465 TYR A 540 REMARK 465 LYS A 541 REMARK 465 GLN A 542 REMARK 465 LYS A 543 REMARK 465 PRO A 544 REMARK 465 LYS A 545 REMARK 465 TYR A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 ARG A 549 REMARK 465 TRP A 550 REMARK 465 LYS A 551 REMARK 465 ILE A 552 REMARK 465 ILE A 553 REMARK 465 GLU A 554 REMARK 465 SER A 555 REMARK 465 TYR A 556 REMARK 465 GLU A 557 REMARK 465 GLY A 558 REMARK 465 PRO A 733 REMARK 465 PRO A 734 REMARK 465 GLY A 735 REMARK 465 LEU A 736 REMARK 465 GLU A 737 REMARK 465 TYR A 738 REMARK 465 SER A 739 REMARK 465 TYR A 740 REMARK 465 ASN A 741 REMARK 465 PRO A 742 REMARK 465 SER A 743 REMARK 465 HIS A 744 REMARK 465 ASN A 745 REMARK 465 PRO A 746 REMARK 465 GLU A 747 REMARK 465 GLU A 748 REMARK 465 GLN A 749 REMARK 465 LEU A 750 REMARK 465 SER A 751 REMARK 465 SER A 752 REMARK 465 ASN A 814 REMARK 465 ALA A 815 REMARK 465 ARG A 816 REMARK 465 ILE A 848 REMARK 465 ARG A 918 REMARK 465 ARG A 919 REMARK 465 GLU A 920 REMARK 465 ARG A 921 REMARK 465 ASP A 922 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 573 2.67 -69.78 REMARK 500 ASN A 581 60.02 -100.78 REMARK 500 LEU A 582 99.89 -169.92 REMARK 500 PHE A 593 -10.96 -160.46 REMARK 500 ALA A 599 157.86 177.05 REMARK 500 ASP A 608 81.26 -69.56 REMARK 500 SER A 620 -58.21 -19.24 REMARK 500 THR A 621 24.86 -79.68 REMARK 500 HIS A 643 124.47 178.96 REMARK 500 ARG A 777 -19.67 78.58 REMARK 500 ASN A 788 132.75 -9.25 REMARK 500 ILE A 827 -71.65 -71.62 REMARK 500 ASP A 829 23.29 -140.74 REMARK 500 CYS A 830 24.26 35.68 REMARK 500 PRO A 855 160.49 -49.15 REMARK 500 ASP A 871 11.54 -69.77 REMARK 500 PRO A 901 -170.94 -66.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1132 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1133 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A1134 DISTANCE = 9.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UF4 A 1001 DBREF 6WXJ A 538 678 UNP P07333 CSF1R_HUMAN 538 678 DBREF 6WXJ A 753 922 UNP P07333 CSF1R_HUMAN 753 922 SEQADV 6WXJ SER A 679 UNP P07333 LINKER SEQADV 6WXJ PRO A 733 UNP P07333 LINKER SEQADV 6WXJ PRO A 734 UNP P07333 LINKER SEQADV 6WXJ GLY A 735 UNP P07333 LINKER SEQADV 6WXJ LEU A 736 UNP P07333 LINKER SEQADV 6WXJ GLU A 737 UNP P07333 LINKER SEQADV 6WXJ TYR A 738 UNP P07333 LINKER SEQADV 6WXJ SER A 739 UNP P07333 LINKER SEQADV 6WXJ TYR A 740 UNP P07333 LINKER SEQADV 6WXJ ASN A 741 UNP P07333 LINKER SEQADV 6WXJ PRO A 742 UNP P07333 LINKER SEQADV 6WXJ SER A 743 UNP P07333 LINKER SEQADV 6WXJ HIS A 744 UNP P07333 LINKER SEQADV 6WXJ ASN A 745 UNP P07333 LINKER SEQADV 6WXJ PRO A 746 UNP P07333 LINKER SEQADV 6WXJ GLU A 747 UNP P07333 LINKER SEQADV 6WXJ GLU A 748 UNP P07333 LINKER SEQADV 6WXJ GLN A 749 UNP P07333 LINKER SEQADV 6WXJ LEU A 750 UNP P07333 LINKER SEQADV 6WXJ SER A 751 UNP P07333 LINKER SEQADV 6WXJ SER A 752 UNP P07333 LINKER SEQRES 1 A 332 TYR LYS TYR LYS GLN LYS PRO LYS TYR GLN VAL ARG TRP SEQRES 2 A 332 LYS ILE ILE GLU SER TYR GLU GLY ASN SER TYR THR PHE SEQRES 3 A 332 ILE ASP PRO THR GLN LEU PRO TYR ASN GLU LYS TRP GLU SEQRES 4 A 332 PHE PRO ARG ASN ASN LEU GLN PHE GLY LYS THR LEU GLY SEQRES 5 A 332 ALA GLY ALA PHE GLY LYS VAL VAL GLU ALA THR ALA PHE SEQRES 6 A 332 GLY LEU GLY LYS GLU ASP ALA VAL LEU LYS VAL ALA VAL SEQRES 7 A 332 LYS MET LEU LYS SER THR ALA HIS ALA ASP GLU LYS GLU SEQRES 8 A 332 ALA LEU MET SER GLU LEU LYS ILE MET SER HIS LEU GLY SEQRES 9 A 332 GLN HIS GLU ASN ILE VAL ASN LEU LEU GLY ALA CYS THR SEQRES 10 A 332 HIS GLY GLY PRO VAL LEU VAL ILE THR GLU TYR CYS CYS SEQRES 11 A 332 TYR GLY ASP LEU LEU ASN PHE LEU ARG ARG LYS SER PRO SEQRES 12 A 332 PRO GLY LEU GLU TYR SER TYR ASN PRO SER HIS ASN PRO SEQRES 13 A 332 GLU GLU GLN LEU SER SER ARG ASP LEU LEU HIS PHE SER SEQRES 14 A 332 SER GLN VAL ALA GLN GLY MET ALA PHE LEU ALA SER LYS SEQRES 15 A 332 ASN CYS ILE HIS ARG ASP VAL ALA ALA ARG ASN VAL LEU SEQRES 16 A 332 LEU THR ASN GLY HIS VAL ALA LYS ILE GLY ASP PHE GLY SEQRES 17 A 332 LEU ALA ARG ASP ILE MET ASN ASP SER ASN TYR ILE VAL SEQRES 18 A 332 LYS GLY ASN ALA ARG LEU PRO VAL LYS TRP MET ALA PRO SEQRES 19 A 332 GLU SER ILE PHE ASP CYS VAL TYR THR VAL GLN SER ASP SEQRES 20 A 332 VAL TRP SER TYR GLY ILE LEU LEU TRP GLU ILE PHE SER SEQRES 21 A 332 LEU GLY LEU ASN PRO TYR PRO GLY ILE LEU VAL ASN SER SEQRES 22 A 332 LYS PHE TYR LYS LEU VAL LYS ASP GLY TYR GLN MET ALA SEQRES 23 A 332 GLN PRO ALA PHE ALA PRO LYS ASN ILE TYR SER ILE MET SEQRES 24 A 332 GLN ALA CYS TRP ALA LEU GLU PRO THR HIS ARG PRO THR SEQRES 25 A 332 PHE GLN GLN ILE CYS SER PHE LEU GLN GLU GLN ALA GLN SEQRES 26 A 332 GLU ASP ARG ARG GLU ARG ASP HET UF4 A1001 34 HETNAM UF4 4-(3-{[(2S)-2-(6-METHOXYPYRIDIN-3-YL)-2,3-DIHYDRO-1,4- HETNAM 2 UF4 BENZODIOXIN-6-YL]METHYL}-3H-IMIDAZO[4,5-B]PYRIDIN-6- HETNAM 3 UF4 YL)-2-METHYLBUT-3-YN-2-AMINE FORMUL 2 UF4 C26 H25 N5 O3 FORMUL 3 HOH *34(H2 O) HELIX 1 AA1 ASP A 565 LEU A 569 5 5 HELIX 2 AA2 ASP A 625 GLY A 641 1 17 HELIX 3 AA3 ASP A 670 LYS A 678 1 9 HELIX 4 AA4 ASP A 754 LYS A 772 1 19 HELIX 5 AA5 ALA A 780 ARG A 782 5 3 HELIX 6 AA6 PHE A 797 ARG A 801 5 5 HELIX 7 AA7 PRO A 818 MET A 822 5 5 HELIX 8 AA8 ALA A 823 ASP A 829 1 7 HELIX 9 AA9 THR A 833 GLU A 847 1 15 HELIX 10 AB1 PHE A 849 LEU A 851 5 3 HELIX 11 AB2 ASN A 862 ASP A 871 1 10 HELIX 12 AB3 PRO A 882 TRP A 893 1 12 HELIX 13 AB4 THR A 902 GLU A 916 1 15 SHEET 1 AA1 5 LEU A 582 ALA A 590 0 SHEET 2 AA1 5 GLY A 594 LEU A 604 -1 O VAL A 596 N LEU A 588 SHEET 3 AA1 5 ALA A 609 LEU A 618 -1 O ALA A 609 N LEU A 604 SHEET 4 AA1 5 LEU A 660 GLU A 664 -1 O THR A 663 N ALA A 614 SHEET 5 AA1 5 LEU A 649 CYS A 653 -1 N GLY A 651 O ILE A 662 SHEET 1 AA2 2 VAL A 784 THR A 787 0 SHEET 2 AA2 2 VAL A 791 ILE A 794 -1 O LYS A 793 N LEU A 785 SITE 1 AC1 15 LEU A 588 VAL A 596 ALA A 614 VAL A 647 SITE 2 AC1 15 THR A 663 GLU A 664 TYR A 665 CYS A 666 SITE 3 AC1 15 CYS A 667 TYR A 668 GLY A 669 LEU A 785 SITE 4 AC1 15 GLY A 795 ASP A 796 PHE A 797 CRYST1 80.520 80.520 144.060 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012419 0.007170 0.000000 0.00000 SCALE2 0.000000 0.014341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006942 0.00000