HEADER DE NOVO PROTEIN 11-MAY-20 6WXO TITLE DE NOVO TIM BARREL-FERREDOXIN FOLD FUSION HOMODIMER WITH 2-HISTIDINE TITLE 2 2-GLUTAMATE CENTRE TFD-HE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TFD-HE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TIM BARREL, FERREDOXIN FOLD, HOMODIMER, SYMMETRIC FUSION, KEYWDS 2 HYPERSTABLE, SYMMETRIC, DE NOVO, REPEAT PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CALDWELL,C.ZEYMER,I.C.HAYDON,P.HUANG,D.HILVERT,D.BAKER REVDAT 5 03-APR-24 6WXO 1 REMARK REVDAT 4 06-MAR-24 6WXO 1 REMARK REVDAT 3 16-DEC-20 6WXO 1 JRNL REVDAT 2 02-DEC-20 6WXO 1 JRNL REMARK REVDAT 1 25-NOV-20 6WXO 0 JRNL AUTH S.J.CALDWELL,I.C.HAYDON,N.PIPERIDOU,P.S.HUANG,M.J.BICK, JRNL AUTH 2 H.S.SJOSTROM,D.HILVERT,D.BAKER,C.ZEYMER JRNL TITL TIGHT AND SPECIFIC LANTHANIDE BINDING IN A DE NOVO TIM JRNL TITL 2 BARREL WITH A LARGE INTERNAL CAVITY DESIGNED BY SYMMETRIC JRNL TITL 3 DOMAIN FUSION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 30362 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33203677 JRNL DOI 10.1073/PNAS.2008535117 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC2_3793 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 54890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9500 - 2.8200 0.95 6687 150 0.1716 0.1842 REMARK 3 2 2.8200 - 2.2400 0.99 6871 147 0.1701 0.1759 REMARK 3 3 2.2400 - 1.9600 0.97 6697 146 0.1480 0.1857 REMARK 3 4 1.9600 - 1.7800 0.97 6719 145 0.1715 0.2564 REMARK 3 5 1.7800 - 1.6500 0.98 6783 152 0.1902 0.2502 REMARK 3 6 1.6500 - 1.5500 0.98 6750 149 0.2266 0.3082 REMARK 3 7 1.5500 - 1.4700 0.96 6612 149 0.3105 0.3752 REMARK 3 8 1.4700 - 1.4100 0.95 6592 141 0.3382 0.3558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2698 REMARK 3 ANGLE : 1.096 3638 REMARK 3 CHIRALITY : 0.085 438 REMARK 3 PLANARITY : 0.007 462 REMARK 3 DIHEDRAL : 17.918 1004 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid -5 or (resid -4 REMARK 3 through -2 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid -1 REMARK 3 through 6 or (resid 7 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG )) or resid 8 through 14 or resid 16 REMARK 3 through 24 or (resid 25 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 26 through 31 or resid 33 REMARK 3 through 41 or (resid 42 through 43 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 44 through 58 or REMARK 3 resid 60 through 62 or (resid 63 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 64 through 73 or REMARK 3 resid 75 through 89 or (resid 90 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 91 or (resid 92 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 93 through 96 or REMARK 3 resid 98 through 111 or (resid 112 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 113 REMARK 3 through 134 or resid 136 through 139 or REMARK 3 (resid 140 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 141 through 143 or resid 145 REMARK 3 through 154 or (resid 155 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 156 through 164)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid -5 through 14 or REMARK 3 resid 16 through 31 or resid 33 through REMARK 3 58 or resid 60 through 64 or (resid 65 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 66 REMARK 3 through 73 or resid 75 through 96 or REMARK 3 resid 98 through 114 or (resid 115 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 116 through 117 or REMARK 3 (resid 118 through 120 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 121 through 134 or resid 136 REMARK 3 through 143 or resid 145 through 161 or REMARK 3 (resid 162 through 163 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 164)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid -5 through 14 or REMARK 3 resid 16 through 31 or resid 33 through REMARK 3 58 or resid 60 through 64 or (resid 65 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 66 REMARK 3 through 73 or resid 75 through 96 or REMARK 3 resid 98 through 114 or (resid 115 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 116 through 117 or REMARK 3 (resid 118 through 120 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 121 through 134 or resid 136 REMARK 3 through 143 or resid 145 through 161 or REMARK 3 (resid 162 through 163 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 164)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid -5 or (resid -4 REMARK 3 through -2 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid -1 REMARK 3 through 6 or (resid 7 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG )) or resid 8 through 14 or resid 16 REMARK 3 through 24 or (resid 25 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 26 through 31 or resid 33 REMARK 3 through 41 or (resid 42 through 43 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 44 through 58 or REMARK 3 resid 60 through 62 or (resid 63 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 64 through 73 or REMARK 3 resid 75 through 89 or (resid 90 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 91 or (resid 92 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 93 through 96 or REMARK 3 resid 98 through 111 or (resid 112 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 113 REMARK 3 through 134 or resid 136 through 139 or REMARK 3 (resid 140 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 141 through 143 or resid 145 REMARK 3 through 154 or (resid 155 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 156 through 164)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 32.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10510 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: TIM BARREL COMPONENT OF ROSETTA MODEL OF TFD-HE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 4.0 AND 2.4 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.25600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 GLY A -15 REMARK 465 GLY A -14 REMARK 465 TRP A -13 REMARK 465 GLY A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 GLY A 167 REMARK 465 MET B -23 REMARK 465 GLY B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 LYS B 165 REMARK 465 LYS B 166 REMARK 465 GLY B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A -4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A -3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A -2 CG CD OE1 NE2 REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 ASN A 92 CG OD1 ND2 REMARK 470 GLU A 112 CD OE1 OE2 REMARK 470 LYS A 118 CD CE NZ REMARK 470 GLU A 140 CD OE1 OE2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 GLU B 65 CD OE1 OE2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 PHE B 120 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A -1 HE22 GLN B 149 1.59 REMARK 500 O HOH A 334 O HOH A 369 1.98 REMARK 500 O1 SO4 B 201 O HOH B 301 2.10 REMARK 500 OD2 ASP B 46 O HOH B 302 2.14 REMARK 500 O HOH B 336 O HOH B 358 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 162 HE ARG B 126 2556 1.42 REMARK 500 O HOH B 380 O HOH B 386 2556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 156 84.39 -152.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 376 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 377 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WVS RELATED DB: PDB REMARK 900 ENGINEERED TIM BARREL FROM WHICH THIS ENGINEERED PROTEIN WAS DERIVED REMARK 900 RELATED ID: 4PWW RELATED DB: PDB REMARK 900 ENGINEERED FERREDOXIN FOLD PROTEIN FROM WHICH THIS ENGINEERED REMARK 900 PROTEIN WAS DERIVED REMARK 900 RELATED ID: 6WXP RELATED DB: PDB REMARK 900 VARIANT PROTEIN WITH ONE AMINO ACID SUBSTITUTION DBREF 6WXO B -23 167 PDB 6WXO 6WXO -23 167 DBREF 6WXO A -23 167 PDB 6WXO 6WXO -23 167 SEQRES 1 A 191 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY TRP GLY GLY SEQRES 2 A 191 SER GLY GLY GLU ASN LEU TYR PHE GLN GLY ASP ILE LEU SEQRES 3 A 191 ILE VAL ASN ALA LYS ASP VAL ASP GLU MET LEU LYS GLN SEQRES 4 A 191 VAL GLU ILE LEU ARG ARG LEU GLY ALA LYS GLN ILE ALA SEQRES 5 A 191 VAL HIS SER SER ASP TRP ARG ILE LEU GLN GLU ALA LEU SEQRES 6 A 191 LYS LYS GLY GLY ASP ILE LEU ILE VAL ASN GLY GLY GLY SEQRES 7 A 191 MET THR ILE THR PHE ARG GLY ASP ASP LEU GLU ALA LEU SEQRES 8 A 191 LEU LYS ALA ALA ILE GLU MET ILE LYS GLN ALA LEU LYS SEQRES 9 A 191 PHE GLY ALA THR ILE THR LEU SER LEU ASP GLY ASN ASP SEQRES 10 A 191 LEU ASN ILE ASN ILE THR GLY VAL PRO GLU GLN VAL ARG SEQRES 11 A 191 LYS GLU LEU ALA LYS GLU ALA GLU ARG LEU ALA LYS GLU SEQRES 12 A 191 PHE GLY ILE THR VAL THR ARG THR GLY GLY GLY ASP VAL SEQRES 13 A 191 ASP GLU MET LEU LYS GLN VAL GLU ILE LEU ARG ARG LEU SEQRES 14 A 191 GLY ALA LYS GLN ILE ALA VAL GLU SER ASP ASP TRP ARG SEQRES 15 A 191 ILE LEU GLN GLU ALA LEU LYS LYS GLY SEQRES 1 B 191 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY TRP GLY GLY SEQRES 2 B 191 SER GLY GLY GLU ASN LEU TYR PHE GLN GLY ASP ILE LEU SEQRES 3 B 191 ILE VAL ASN ALA LYS ASP VAL ASP GLU MET LEU LYS GLN SEQRES 4 B 191 VAL GLU ILE LEU ARG ARG LEU GLY ALA LYS GLN ILE ALA SEQRES 5 B 191 VAL HIS SER SER ASP TRP ARG ILE LEU GLN GLU ALA LEU SEQRES 6 B 191 LYS LYS GLY GLY ASP ILE LEU ILE VAL ASN GLY GLY GLY SEQRES 7 B 191 MET THR ILE THR PHE ARG GLY ASP ASP LEU GLU ALA LEU SEQRES 8 B 191 LEU LYS ALA ALA ILE GLU MET ILE LYS GLN ALA LEU LYS SEQRES 9 B 191 PHE GLY ALA THR ILE THR LEU SER LEU ASP GLY ASN ASP SEQRES 10 B 191 LEU ASN ILE ASN ILE THR GLY VAL PRO GLU GLN VAL ARG SEQRES 11 B 191 LYS GLU LEU ALA LYS GLU ALA GLU ARG LEU ALA LYS GLU SEQRES 12 B 191 PHE GLY ILE THR VAL THR ARG THR GLY GLY GLY ASP VAL SEQRES 13 B 191 ASP GLU MET LEU LYS GLN VAL GLU ILE LEU ARG ARG LEU SEQRES 14 B 191 GLY ALA LYS GLN ILE ALA VAL GLU SER ASP ASP TRP ARG SEQRES 15 B 191 ILE LEU GLN GLU ALA LEU LYS LYS GLY HET GOL A 201 14 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 B 201 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *168(H2 O) HELIX 1 AA1 ASP B 8 LEU B 22 1 15 HELIX 2 AA2 ASP B 33 LYS B 43 1 11 HELIX 3 AA3 ASP B 63 PHE B 81 1 19 HELIX 4 AA4 PRO B 102 GLY B 121 1 20 HELIX 5 AA5 ASP B 131 GLY B 146 1 16 HELIX 6 AA6 ASP B 156 LEU B 164 1 9 HELIX 7 AA7 ASP A 8 LEU A 22 1 15 HELIX 8 AA8 ASP A 33 LYS A 43 1 11 HELIX 9 AA9 ASP A 63 PHE A 81 1 19 HELIX 10 AB1 PRO A 102 GLY A 121 1 20 HELIX 11 AB2 ASP A 131 GLY A 146 1 16 HELIX 12 AB3 ASP A 156 LYS A 165 1 10 SHEET 1 AA1 9 ILE B 1 ASN B 5 0 SHEET 2 AA1 9 ILE B 27 HIS B 30 1 O ALA B 28 N VAL B 4 SHEET 3 AA1 9 ILE B 47 ASN B 51 1 O ILE B 49 N VAL B 29 SHEET 4 AA1 9 GLN B 149 SER B 154 1 O GLU B 153 N VAL B 50 SHEET 5 AA1 9 ILE A 1 ASN A 5 1 O ILE A 3 N VAL B 152 SHEET 6 AA1 9 ILE A 27 HIS A 30 1 O HIS A 30 N VAL A 4 SHEET 7 AA1 9 ILE A 47 ASN A 51 1 O ILE A 49 N VAL A 29 SHEET 8 AA1 9 ILE A 150 SER A 154 1 O ALA A 151 N VAL A 50 SHEET 9 AA1 9 ILE B 1 ASN B 5 1 N ILE B 3 O VAL A 152 SHEET 1 AA2 8 THR B 123 ARG B 126 0 SHEET 2 AA2 8 MET B 55 ARG B 60 -1 N ARG B 60 O THR B 123 SHEET 3 AA2 8 ASP B 93 THR B 99 -1 O ILE B 98 N MET B 55 SHEET 4 AA2 8 THR B 84 ASP B 90 -1 N THR B 86 O ASN B 97 SHEET 5 AA2 8 THR A 84 ASP A 90 -1 O ILE A 85 N LEU B 87 SHEET 6 AA2 8 ASP A 93 THR A 99 -1 O ASN A 97 N THR A 86 SHEET 7 AA2 8 MET A 55 ARG A 60 -1 N PHE A 59 O LEU A 94 SHEET 8 AA2 8 THR A 123 ARG A 126 -1 O THR A 123 N ARG A 60 SITE 1 AC1 6 GLU B 103 ARG B 106 ASP B 131 VAL B 132 SITE 2 AC1 6 HOH B 301 HOH B 368 SITE 1 AC2 8 GLU A 119 ARG A 143 ALA A 147 GLN A 149 SITE 2 AC2 8 ILE A 150 HOH A 311 GLY B -1 ASP B 0 SITE 1 AC3 6 GLU A 103 GLY A 128 GLY A 129 GLY A 130 SITE 2 AC3 6 ASP A 131 HOH A 307 SITE 1 AC4 2 LYS A 76 GLN A 77 CRYST1 48.851 62.512 48.949 90.00 95.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020470 0.000000 0.001888 0.00000 SCALE2 0.000000 0.015997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020516 0.00000